BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141109.6 - phase: 0
(348 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum] 167 3e-40
gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum] 164 5e-39
gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum] 161 3e-38
gb|AAT39964.1| putative gag polyprotein [Solanum demissum] 132 2e-29
emb|CAC44143.1| putative gag polyprotein [Cicer arietinum] 101 3e-20
gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum... 88 4e-16
dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera] 68 5e-10
gb|AAP52584.1| putative polyprotein [Oryza sativa (japonica cult... 66 1e-09
emb|CAB77862.1| hypothetical protein [Arabidopsis thaliana] gi|3... 65 4e-09
gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cul... 64 9e-09
gb|AAP54915.1| putative gag-pol precursor [Oryza sativa (japonic... 63 1e-08
gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cult... 63 1e-08
gb|AAX95359.1| Retrotransposon gag protein, putative [Oryza sati... 62 3e-08
ref|XP_469341.1| putative GAG-POL precursor [Oryza sativa (japon... 62 3e-08
ref|XP_471080.1| OSJNBb0089K24.6 [Oryza sativa (japonica cultiva... 61 4e-08
gb|AAS76264.1| At3g32092 [Arabidopsis thaliana] 61 6e-08
gb|AAP54365.1| putative gag-pol precursor [Oryza sativa (japonic... 60 7e-08
gb|AAV32231.1| putative polyprotein [Oryza sativa (japonica cult... 60 7e-08
gb|AAV44132.1| putative polyprotein [Oryza sativa (japonica cult... 60 1e-07
gb|AAM01165.2| Hypothetical protein similar to putative retroele... 60 1e-07
>gb|AAQ82037.1| gag/pol polyprotein [Pisum sativum]
Length = 2262
Score = 167 bits (424), Expect = 3e-40
Identities = 102/317 (32%), Positives = 167/317 (52%), Gaps = 35/317 (11%)
Query: 7 EMAEVIKTMAEAQAQAQVLAQAQAQAHAQAQ----VPPPPPVRTQVEASSSTISEWTICA 62
E+AE+ MA+ Q +AQ Q + A Q V PPP + + E
Sbjct: 7 ELAEMRANMAQFMHMMQGVAQGQEELRALVQRQEAVTPPP---------NQALPEGNPVH 57
Query: 63 DTPTHSAPQHSMPWFPPFTTGEILCPIACEAQMPTHQYVAHVPPPPVRAPLVVMTYSAPM 122
DTP + P ++ + GE L I + Q + P A ++ AP
Sbjct: 58 DTPAAAIPVNN------YAVGEELMGIRVDGQP--------IAPDAANARVI----HAPA 99
Query: 123 IHTVPQIE--EPIF--HSGNMEVCDRVNDLQEKYDELQRDMRALRGKEKFGKTAYDLCLV 178
+ +P ++ E +F S + ++ R + K D L +RA+ + G ++ LV
Sbjct: 100 RNRIPIVDRQEDLFTMFSEDEDIPGRNDARDRKVDALAEKIRAMECQNSLGFDVTNMGLV 159
Query: 179 LNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWY 238
++IP+KFK P F+KY G SCP H++ Y R++S Y ++++++Y+FQ+SL+ + WY
Sbjct: 160 EGLRIPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWY 219
Query: 239 TNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQV 298
L I+ + DL E F+ QY +N+DMAP R+ LQ++ Q++ E+FKEYA RWR+ A +V
Sbjct: 220 MELKSDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSNESFKEYAQRWRELAARV 279
Query: 299 SPRIEEKEMTKIFLKTL 315
P + E+E+T +F+ TL
Sbjct: 280 QPPMLERELTDMFIGTL 296
>gb|AAQ82033.1| gag/pol polyprotein [Pisum sativum]
Length = 1814
Score = 164 bits (414), Expect = 5e-39
Identities = 104/313 (33%), Positives = 167/313 (53%), Gaps = 26/313 (8%)
Query: 7 EMAEVIKTMAEAQAQAQVLAQAQAQAHA--QAQVPPPPPVRTQVEASSSTISEWTICADT 64
E+AE+ MA+ Q +AQ Q + A Q Q PPV ++ + A
Sbjct: 7 ELAEMKANMAQFMNMMQGVAQGQEELRALVQRQEAAIPPVN-HAPPEGGPVNGNNVAAAV 65
Query: 65 PTHSAPQHSMPWFPPFTTGEILCPIACEAQMPTHQYVAHVPPPPVRAPLVVMTYSAPMIH 124
P ++ + G+ L I Q P VA+ VRAP AP++
Sbjct: 66 PINN-----------YAVGDELGGIRINGQ-PIAPDVANARA--VRAPA---RNPAPIVD 108
Query: 125 TVPQIEEPIFH--SGNMEVCDRVNDLQEKYDELQRDMRALRGKEKFGKTAYDLCLVLNVQ 182
+E +F S + +V RV++ K D L +RA+ + G ++ LV ++
Sbjct: 109 R----QEDMFSLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLGFDVTNMGLVEGLR 164
Query: 183 IPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYTNLD 242
IP+KFK P F+KY G SCP H++ Y R++S Y ++++++Y+FQ+SL+ + WY L
Sbjct: 165 IPYKFKAPSFDKYNGTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYMELK 224
Query: 243 KTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVSPRI 302
+ I+ + DL E F+ QY +N+DMAP R+ LQ++ Q++ E+FKEYA RWR+ A +V P +
Sbjct: 225 RDSIRCWKDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQPPM 284
Query: 303 EEKEMTKIFLKTL 315
E+E+T +F+ TL
Sbjct: 285 LERELTDMFIGTL 297
>gb|AAQ82035.1| gag/pol polyprotein [Pisum sativum]
Length = 1105
Score = 161 bits (407), Expect = 3e-38
Identities = 100/315 (31%), Positives = 164/315 (51%), Gaps = 30/315 (9%)
Query: 7 EMAEVIKTMAEAQAQAQVLAQAQAQAHA--QAQVPPPPPVRTQVEASSSTISEWTICADT 64
E+AE+ MA+ Q +AQ Q + A Q Q PPV +++ + A
Sbjct: 7 ELAEMKANMAQFMNMMQGVAQGQEELRAMVQRQEAAIPPVN-HAPPEGGPVNDNNVAAAV 65
Query: 65 PTHSAPQHSMPWFPPFTTGEILCPIACEAQMPTHQYVAHVPPPPVRAPLVVMTYSAPMIH 124
P ++ + G+ L I +Q P V T AP +
Sbjct: 66 PINN-----------YDVGDELGGIRINSQ------------PIVPDAANARTIRAPARN 102
Query: 125 TVPQIE--EPIFH--SGNMEVCDRVNDLQEKYDELQRDMRALRGKEKFGKTAYDLCLVLN 180
VP ++ E +F S + +V RV++ K D L +RA+ + ++ LV
Sbjct: 103 PVPIVDRQEDMFTLLSEDEDVLGRVDERDRKVDALAEKIRAMECQNSLSFDVTNMGLVEG 162
Query: 181 VQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYTN 240
++IP+KFK P F+KY SCP H++ Y R++S Y ++++++Y+FQ+SL+ + WY
Sbjct: 163 LRIPYKFKAPSFDKYNDTSCPRTHVQAYYRKISAYTDDEKMWMYFFQDSLSGASLDWYME 222
Query: 241 LDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVSP 300
L + I+ + DL E F+ QY +N+DMAP R+ LQ++ Q++ E+FKEYA RWR+ A +V P
Sbjct: 223 LKRDSIRCWRDLGEAFLRQYKHNMDMAPSRTQLQSLCQKSGESFKEYAQRWRELAARVQP 282
Query: 301 RIEEKEMTKIFLKTL 315
+ E+E+T +F+ TL
Sbjct: 283 PMLERELTDMFIGTL 297
>gb|AAT39964.1| putative gag polyprotein [Solanum demissum]
Length = 421
Score = 132 bits (332), Expect = 2e-29
Identities = 72/196 (36%), Positives = 112/196 (56%), Gaps = 11/196 (5%)
Query: 118 YSAPMIHTVPQIEEPIFHSGNMEVCDRVNDLQEKYDELQRDMRALRGKEKFGKTAYDLCL 177
YS+P +IE+ + + + E+ ++ L+ RDM+ L G + G + DLC+
Sbjct: 139 YSSPF-----KIEKTVKNEEHEEMTKKMKSLEHSI----RDMQGLGGHK--GISFSDLCM 187
Query: 178 VLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKW 237
+V +P FK P FEKY G+ P HLK Y ++ +++ + YF ESL ASKW
Sbjct: 188 FPHVHLPTGFKTPNFEKYDGHGDPIAHLKRYYNQLRGAEGKEELLMAYFGESLVGIASKW 247
Query: 238 YTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQ 297
+ + D T+ DL+ FV+Q+ YN+D+ PDRS L M ++ E F+EYA RWR+ A +
Sbjct: 248 FIDQDIANWHTWDDLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAAR 307
Query: 298 VSPRIEEKEMTKIFLK 313
V P ++E EM +FL+
Sbjct: 308 VKPPMKELEMIDVFLQ 323
>emb|CAC44143.1| putative gag polyprotein [Cicer arietinum]
Length = 88
Score = 101 bits (252), Expect = 3e-20
Identities = 43/88 (48%), Positives = 66/88 (74%)
Query: 175 LCLVLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPA 234
+CLV +V IP KFKV FEKYKG +CP+ HL MY R+M+++A ND++ I++FQ+SL+ +
Sbjct: 1 MCLVPDVTIPRKFKVLEFEKYKGATCPKNHLTMYGRKMASHAHNDKLLIHFFQDSLSGAS 60
Query: 235 SKWYTNLDKTRIQTFCDLSEVFVEQYNY 262
WY +L++ RI ++ DL++ F+ QY Y
Sbjct: 61 LSWYMHLERNRIHSWKDLADAFLRQYKY 88
>gb|AAU90285.1| putative gag/pol polyprotein, 3'-partial [Solanum demissum]
Length = 1784
Score = 87.8 bits (216), Expect = 4e-16
Identities = 56/196 (28%), Positives = 97/196 (48%), Gaps = 39/196 (19%)
Query: 118 YSAPMIHTVPQIEEPIFHSGNMEVCDRVNDLQEKYDELQRDMRALRGKEKFGKTAYDLCL 177
YS+P +IE+ + + + E+ ++ L++ RDM+ L G + G + DLC+
Sbjct: 659 YSSPF-----KIEKTVKNEEHEEMAKKMKSLEQSI----RDMQGLGGHK--GISFSDLCM 707
Query: 178 VLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKW 237
+V +P + +++ + YF ESL AS+W
Sbjct: 708 FPHVHLP----------------------------TGAEGKEELLMAYFGESLVGIASEW 739
Query: 238 YTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQ 297
+ + D T+ +L+ FV+Q+ YN+D+ PDRS L M ++ E F+EYA RWR+ A +
Sbjct: 740 FIDQDIANWHTWDNLARCFVQQFQYNIDIVPDRSSLANMRKKTTENFREYAVRWREQAAR 799
Query: 298 VSPRIEEKEMTKIFLK 313
V ++E EM +FL+
Sbjct: 800 VKLSMKESEMIDVFLQ 815
>dbj|BAD18985.1| GAG-POL precursor [Vitis vinifera]
Length = 549
Score = 67.8 bits (164), Expect = 5e-10
Identities = 38/121 (31%), Positives = 57/121 (46%)
Query: 178 VLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKW 237
++N + P F VP F Y G S P +H+ Y + M+ ND + F SL A W
Sbjct: 10 IINYEPPRGFLVPKFSTYDGTSDPFDHIMHYRQLMTLDIGNDALLCKVFPASLQGQALSW 69
Query: 238 YTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQ 297
+ L + F DLSE FV QY + + S LQ + ++ E+ +E+ R+ Q
Sbjct: 70 FHRLPPNSVGNFRDLSEAFVGQYLCSARHKQNISTLQNIKMQDNESLREFVKRFGQAVLQ 129
Query: 298 V 298
V
Sbjct: 130 V 130
>gb|AAP52584.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531990|ref|NP_920297.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|22857591|gb|AAN09865.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1469
Score = 66.2 bits (160), Expect = 1e-09
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 9/168 (5%)
Query: 164 GKEKFGKTAYDLCLVLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFI 223
G FG++ D V+ P +F+ +KY G++ PEE L++Y + +D
Sbjct: 325 GCRAFGRSLRD------VRWPERFRPRAIKKYDGSTDPEEFLQVYSTVLYAAGADDNALA 378
Query: 224 YYFQESLASPASKWYTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKET 283
Y +L A W +L I ++ DL + FV + DL A+TQ + E+
Sbjct: 379 NYLPTALKGSARSWLMHLPPYSISSWADLWQQFVANFQGTYKHHAIEDDLHALTQNSGES 438
Query: 284 FKEYAHRWRDTATQVSPRIEEKEMTKIFLKTL--SYTTRRWSEVRPRT 329
+EY R+ + + P I + + + F + YTT+ +P+T
Sbjct: 439 LREYVRRFNECRNTI-PEITDSSVIRTFKSGVRDRYTTQERKNDKPKT 485
>emb|CAB77862.1| hypothetical protein [Arabidopsis thaliana]
gi|3695397|gb|AAC62798.1| T5H22.2 gene product
[Arabidopsis thaliana] gi|7487687|pir||T01957
hypothetical protein T5H22.2 - Arabidopsis thaliana
Length = 464
Score = 64.7 bits (156), Expect = 4e-09
Identities = 34/119 (28%), Positives = 63/119 (52%), Gaps = 7/119 (5%)
Query: 184 PHKFKVPYFEKYKGNSCPEEHLKMYV----RRMSTYARNDQVFIYYFQESLASPASKWYT 239
P K ++ YF G+S P+ HLK+++ R D + F E L PA W+T
Sbjct: 231 PGKLRIEYFN---GSSDPKGHLKLFIISVARAKFRPEERDAGLCHLFVEHLKGPALNWFT 287
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQV 298
L + +F +LS +F++QY+ +D + +DL +++Q+ E +++ ++R T +V
Sbjct: 288 RLKGNSVDSFQELSTLFLKQYSVLIDPSTSDADLWSLSQQPNEPLRDFLAKFRSTLAKV 346
>gb|AAP53546.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37533914|ref|NP_921259.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|14018058|gb|AAK52121.1| Putative retroelement [Oryza
sativa]
Length = 2079
Score = 63.5 bits (153), Expect = 9e-09
Identities = 46/181 (25%), Positives = 78/181 (42%), Gaps = 13/181 (7%)
Query: 146 NDLQEKYDELQRDMRA----LRGKEKFGKTAYDLCLVLNVQIPHKFKVPYFEKYKGNSCP 201
+ L +++ RD R G FG++ D V+ P +F+ EKY G+ P
Sbjct: 539 SSLSDRHPRRSRDHRQPTAPSAGCRAFGRSLRD------VRWPERFRPGAIEKYDGSIDP 592
Query: 202 EEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYTNLDKTRIQTFCDLSEVFVEQYN 261
EE L++Y + +D Y +L A W +L I ++ DL + FV +
Sbjct: 593 EEFLQVYSTVLYAAGADDNAVANYLPTALKGSARSWLMHLPPYSISSWADLWQQFVANFQ 652
Query: 262 YNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVSPRIEEKEMTKIFLKTL--SYTT 319
DL A+TQ + E+ +EY R+ + + P I + + + F + YTT
Sbjct: 653 GTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTI-PEITDASVIRAFKSGVRDRYTT 711
Query: 320 R 320
+
Sbjct: 712 Q 712
>gb|AAP54915.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37536652|ref|NP_922628.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|13876537|gb|AAK43513.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
Length = 1519
Score = 62.8 bits (151), Expect = 1e-08
Identities = 40/155 (25%), Positives = 70/155 (44%), Gaps = 3/155 (1%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P +F+ EKY G++ PEE L++Y + +D Y +L A W
Sbjct: 288 DVRWPERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDNALANYLSTALKGSARSWLM 347
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I ++ DL + FV + +L A+TQ + E+ +EY R+ + +
Sbjct: 348 HLPPYSISSWADLWQQFVANFQGTYKRHAIEDNLHALTQNSGESLREYVRRFNECRNTI- 406
Query: 300 PRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
P I + + + F + YTT+ + R T R
Sbjct: 407 PEITDASVIRAFKSGVRDRYTTQELATRRITTTRR 441
>gb|AAT77397.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1194
Score = 62.8 bits (151), Expect = 1e-08
Identities = 43/171 (25%), Positives = 74/171 (43%), Gaps = 9/171 (5%)
Query: 164 GKEKFGKTAYDLCLVLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFI 223
G FG++ D V+ P +F+ EKY G++ P+E L++Y + +D
Sbjct: 430 GCRAFGRSLRD------VRWPERFRPGAIEKYDGSTDPKEFLQVYSTVLYAAGADDNALA 483
Query: 224 YYFQESLASPASKWYTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKET 283
Y +L A W +L I ++ DL + F+ + DL A+TQ + E+
Sbjct: 484 NYLPTALKGSARSWLMHLPPYSISSWADLRQQFIANFQGTYKRHAIEDDLHALTQNSGES 543
Query: 284 FKEYAHRWRDTATQVSPRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
+EY R + + P I + + + F + YTT+ + R T R
Sbjct: 544 LREYVRRLNECRNTI-PEITDASVIRAFKSGVRDRYTTQELATRRITTTRR 593
>gb|AAX95359.1| Retrotransposon gag protein, putative [Oryza sativa (japonica
cultivar-group)]
Length = 635
Score = 61.6 bits (148), Expect = 3e-08
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P KF+ EKY G++ PEE L++Y + +D Y +L A W
Sbjct: 358 DVRWPEKFRPGAIEKYDGSTDPEEFLQVYSTILYAAGADDNALANYLPAALKGSARSWLV 417
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I ++ DL + FV + +L A+TQ E+ ++Y R+ + +
Sbjct: 418 HLPPYLISSWADLWQQFVANFQGTYKRHEIEDNLHALTQNPGESLRDYIRRFNECRNTI- 476
Query: 300 PRIEEKEMTKIFLKTL--SYTTRRWSEVR 326
P I + + ++F + YTT+ + R
Sbjct: 477 PEITDASVIRVFKSGVRDHYTTQELATKR 505
>ref|XP_469341.1| putative GAG-POL precursor [Oryza sativa (japonica cultivar-group)]
gi|28273421|gb|AAO38507.1| putative GAG-POL precursor
[Oryza sativa (japonica cultivar-group)]
Length = 831
Score = 61.6 bits (148), Expect = 3e-08
Identities = 40/155 (25%), Positives = 68/155 (43%), Gaps = 3/155 (1%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P +F+ EKY G++ PEE L++Y + +D + Y +L A W
Sbjct: 343 DVRWPERFRPGAIEKYDGSTNPEEFLQVYSTVLYAAGADDSALVNYLPTALKGSARSWLM 402
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I + DL + FV + DL A+TQ E+ +Y R+ + +
Sbjct: 403 HLPPYSISLWADLWQQFVANFQGTYKRHAIEDDLHALTQNPGESLSDYVWRFNECRNTI- 461
Query: 300 PRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
P I + + + F + YTT+ + R T R
Sbjct: 462 PEITDASVIRAFKSGVRDRYTTQELATRRVTTTRR 496
>ref|XP_471080.1| OSJNBb0089K24.6 [Oryza sativa (japonica cultivar-group)]
gi|38344100|emb|CAD39396.2| OSJNBb0089K24.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1400
Score = 61.2 bits (147), Expect = 4e-08
Identities = 40/155 (25%), Positives = 69/155 (43%), Gaps = 3/155 (1%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P +F+ EKY G++ PEE L++Y + +D Y +L A W
Sbjct: 435 DVRWPERFRPRAIEKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGYARSWLM 494
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I ++ DL + FV + DL A+TQ + E+ +EY R+ + +
Sbjct: 495 HLPPYSISSWADLWQQFVANFQGTYKRHAIEDDLHALTQNSGESLREYVRRFNECRNTI- 553
Query: 300 PRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
P I + + + + YTT+ + R T R
Sbjct: 554 PEITDASVIRALKSGVRDRYTTQELATRRITTTRR 588
>gb|AAS76264.1| At3g32092 [Arabidopsis thaliana]
Length = 190
Score = 60.8 bits (146), Expect = 6e-08
Identities = 32/119 (26%), Positives = 61/119 (50%), Gaps = 7/119 (5%)
Query: 184 PHKFKVPYFEKYKGNSCPEEHLKMYV----RRMSTYARNDQVFIYYFQESLASPASKWYT 239
P K ++ YF G+S P+ HLK ++ R D + F E L PA W++
Sbjct: 42 PGKLRIEYFN---GSSDPKGHLKSFIISVARAQFRPEERDAGLCHLFVEHLKGPALDWFS 98
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQV 298
L+ + +F +LS +F++QY+ +D +DL +++ + E +++ ++R T +V
Sbjct: 99 RLEGNSVDSFQELSTLFLKQYSVLIDPGTSDADLWSLSHQPNEPLRDFLAKFRSTLAKV 157
>gb|AAP54365.1| putative gag-pol precursor [Oryza sativa (japonica cultivar-group)]
gi|37535552|ref|NP_922078.1| putative gag-pol precursor
[Oryza sativa (japonica cultivar-group)]
gi|16905190|gb|AAL31060.1| putative gag-pol precursor
[Oryza sativa]
Length = 698
Score = 60.5 bits (145), Expect = 7e-08
Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 3/155 (1%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P +F+ +KY G++ PEE L++Y + +D Y +L A W
Sbjct: 208 DVRWPERFRPGAIKKYDGSTDPEEFLQVYSTVLYAAGADDNALANYLPTALKGSARSWLM 267
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I ++ DL + F+ + DL A+TQ + E+ +EY + + +
Sbjct: 268 HLPPYSISSWADLWQQFIANFQGTYKRHAIEDDLHALTQNSGESLREYVRHFNECRNTI- 326
Query: 300 PRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
P I + + + F + YTT+ + R T R
Sbjct: 327 PEITDASVIRAFKSGVRDRYTTQELATRRITTTRR 361
>gb|AAV32231.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 3092
Score = 60.5 bits (145), Expect = 7e-08
Identities = 40/148 (27%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 184 PHKFKVPYFEKYK-----GNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWY 238
P +F+ EKY G++ PEE L++Y + +D F Y L A W
Sbjct: 1721 PERFRPGAIEKYSTLLNDGSTDPEEFLQVYSTVLYAAGADDNAFANYLPTVLKGSARSWL 1780
Query: 239 TNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQV 298
+L I ++ DL + FV + + DL A+TQ + E+ +EY R+ + +
Sbjct: 1781 MHLPPYSISSWADLWQQFVANFQGTYKHHAIKDDLHALTQNSGESLREYVRRFNECRNTI 1840
Query: 299 SPRIEEKEMTKIFLKTLSYTTRRWSEVR 326
P+I + + + F K+ TRR + R
Sbjct: 1841 -PKITDASVIRAF-KSGELATRRITTTR 1866
>gb|AAV44132.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1185
Score = 60.1 bits (144), Expect = 1e-07
Identities = 40/154 (25%), Positives = 66/154 (41%), Gaps = 8/154 (5%)
Query: 180 NVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFIYYFQESLASPASKWYT 239
+V+ P +F+ EKY G++ PEE L++Y +D Y +L A W
Sbjct: 316 DVRWPERFRPGAIEKYDGSTDPEEFLQVYSTVPYAAGADDNALANYLPTALKGSARSWLM 375
Query: 240 NLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKETFKEYAHRWRDTATQVS 299
+L I ++ DL + FV + DL A+TQ E+ ++Y R+ D +
Sbjct: 376 HLPPYSISSWADLWQQFVGNFQGTYKRHMIEDDLHALTQNPGESLRDYVRRFNDCRNTI- 434
Query: 300 PRIEEKEMTKIF-------LKTLSYTTRRWSEVR 326
P I + + + F TL TR+ + R
Sbjct: 435 PEITDASVIRAFKTGVRDRYTTLELATRQITTTR 468
>gb|AAM01165.2| Hypothetical protein similar to putative retroelement [Oryza sativa
(japonica cultivar-group)]
Length = 1001
Score = 60.1 bits (144), Expect = 1e-07
Identities = 46/171 (26%), Positives = 74/171 (42%), Gaps = 11/171 (6%)
Query: 164 GKEKFGKTAYDLCLVLNVQIPHKFKVPYFEKYKGNSCPEEHLKMYVRRMSTYARNDQVFI 223
G FG++ D V+ P +F+ EKY G++ PEE L++Y + +D
Sbjct: 505 GCRAFGRSLRD------VRWPERFRPGAIEKYDGSADPEEFLQVYSTVLYATGADDNALA 558
Query: 224 YYFQESLASPASKWYTNLDKTRIQTFCDLSEVFVEQYNYNVDMAPDRSDLQAMTQENKET 283
Y +L A W +L T Q DL + FV + + DL A+TQ + E+
Sbjct: 559 NYLPAALKGSARSWLMHLPPT--QFLHDLWQQFVANFQGTYKRHAIKDDLHALTQNSGES 616
Query: 284 FKEYAHRWRDTATQVSPRIEEKEMTKIFLKTL--SYTTRRWSEVRPRTLLR 332
+EY R+ + + P I + + F + YTT+ + R T R
Sbjct: 617 LREYVSRFNECRNTI-PEITDASVIHAFKSGVRDRYTTQELATRRITTTRR 666
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.130 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 618,751,410
Number of Sequences: 2540612
Number of extensions: 26426378
Number of successful extensions: 118952
Number of sequences better than 10.0: 822
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 323
Number of HSP's that attempted gapping in prelim test: 113988
Number of HSP's gapped (non-prelim): 2751
length of query: 348
length of database: 863,360,394
effective HSP length: 129
effective length of query: 219
effective length of database: 535,621,446
effective search space: 117301096674
effective search space used: 117301096674
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 75 (33.5 bits)
Medicago: description of AC141109.6