BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139882.5 - phase: 0
(379 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP54095.1| putative spliceosomal protein [Oryza sativa (japo... 541 e-152
gb|AAN12991.1| putative spliceosome-associated protein [Arabidop... 524 e-147
gb|AAK59656.1| putative spliceosome associated protein [Arabidop... 523 e-147
gb|AAM65408.1| putative spliceosome associated protein [Arabidop... 521 e-146
gb|AAH67655.1| Splicing factor 3b, subunit 4 [Danio rerio] gi|34... 405 e-112
ref|XP_393914.1| PREDICTED: similar to ENSANGP00000011587 [Apis ... 405 e-111
gb|AAM28203.2| splicing factor 3b subunit 4 [Danio rerio] 404 e-111
ref|XP_540295.1| PREDICTED: similar to Splicing factor 3b, subun... 400 e-110
emb|CAI12554.1| splicing factor 3b, subunit 4, 49kDa [Homo sapie... 400 e-110
ref|NP_694693.1| splicing factor 3b, subunit 4 [Mus musculus] gi... 400 e-110
ref|XP_582525.1| PREDICTED: similar to Splicing factor 3b, subun... 400 e-110
dbj|BAD97042.1| splicing factor 3b, subunit 4 variant [Homo sapi... 398 e-109
gb|AAH77458.1| MGC82420 protein [Xenopus laevis] 395 e-108
gb|AAH45264.1| Spx-prov protein [Xenopus laevis] 394 e-108
gb|AAH61357.1| Spx-prov protein [Xenopus tropicalis] gi|45360881... 393 e-108
emb|CAB60993.2| Hypothetical protein C08B11.5 [Caenorhabditis el... 388 e-106
gb|AAC47514.1| RRM-type RNA binding protein 388 e-106
ref|XP_587412.1| PREDICTED: similar to Splicing factor 3b, subun... 387 e-106
ref|XP_321584.2| ENSANGP00000011587 [Anopheles gambiae str. PEST... 386 e-106
pir||JC5437 spliceosome-associated protein 49 - Caenorhabditis e... 384 e-105
>gb|AAP54095.1| putative spliceosomal protein [Oryza sativa (japonica
cultivar-group)] gi|37535012|ref|NP_921808.1| putative
spliceosomal protein [Oryza sativa (japonica
cultivar-group)]
Length = 355
Score = 541 bits (1393), Expect = e-152
Identities = 281/373 (75%), Positives = 301/373 (80%), Gaps = 25/373 (6%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
MTTRIAPGVGANLLGQHSAERNQDAT YVGNLDPQ+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTRIAPGVGANLLGQHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTN HQGYGFVEFRSEEDADYAIK+LNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQGYGFVEFRSEEDADYAIKILNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVIVTNPKIMRDP+TGNSRGFGF+SYDSFE+SD AIEAMN Q+LC
Sbjct: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSDQAIEAMNNQHLC 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
NR ITVSYAYKKDTKGERHGTPAER+LAA+NP +QK+RPHT+FASGPP+ ANG
Sbjct: 181 NRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFASGPPT---QGLANG-- 235
Query: 241 PAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPP 300
APVP RPF+NG PP I ++PPPP F PMQM GQ VW Q P P
Sbjct: 236 -APVP-RPFSNGAVPPQIQHVRPPPPPMQQFPPMQMN--GQPVWPPQNTQLPPHM----P 287
Query: 301 PMQQFRPPHSMQMPPP----PPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPM 356
P +RP +++ PPP PPP GM PP PPPS M +WRPPPPPQQ GG P
Sbjct: 288 PQMHYRP--AVRPPPPNMMPPPPLGMVRPP---PPPSSMPA-PPMWRPPPPPQQAGGMPP 341
Query: 357 GYPQNSMPPPPPP 369
P SMPPPPPP
Sbjct: 342 --PPMSMPPPPPP 352
Score = 74.3 bits (181), Expect = 6e-12
Identities = 80/300 (26%), Positives = 124/300 (40%), Gaps = 27/300 (9%)
Query: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
+ N Q + A ++GNLDP V E+LL++ F G +V N + +D T +G
Sbjct: 9 VGANLLGQHSAERNQDATTYVGNLDPQVSEELLWELFVQAGPVV-NVYVPKDRVTNLHQG 67
Query: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQ 215
+GF+ + S E +D AI+ +N L + I V+ A +D K G A + +P
Sbjct: 68 YGFVEFRSEEDADYAIKILNMIKLYGKPIRVNKA-SQDKKSLDVG--ANLFIGNLDPDVD 124
Query: 216 KSRPHTLFAS------GPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAP 269
+ + F++ P + + N V F + I+ Q
Sbjct: 125 EKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFVSYDSFESSD-----QAIEAMNNQHL 179
Query: 270 AFQPMQMPPPGQQVWHQQQQGQPMMQQ-GMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRP 328
+P+ + ++ ++ G P + P Q PH+M PP G P P
Sbjct: 180 CNRPITVSYAYKKDTKGERHGTPAERLLAANNPGSQKNRPHTMFASGPPTQGLANGAPVP 239
Query: 329 LP-PPSVMAGQQQVWRPPPPPQQQ------GGHPMGYPQNSMPPP--PPPNHH--GMRPP 377
P + Q Q RPPPPP QQ G P+ PQN+ PP PP H+ +RPP
Sbjct: 240 RPFSNGAVPPQIQHVRPPPPPMQQFPPMQMNGQPVWPPQNTQLPPHMPPQMHYRPAVRPP 299
>gb|AAN12991.1| putative spliceosome-associated protein [Arabidopsis thaliana]
gi|4218014|gb|AAD12222.1| putative spliceosome
associated protein [Arabidopsis thaliana]
gi|15224186|ref|NP_179441.1| pre-mRNA splicing factor,
putative [Arabidopsis thaliana] gi|25386562|pir||B84565
probable spliceosome associated protein [imported] -
Arabidopsis thaliana
Length = 363
Score = 524 bits (1350), Expect = e-147
Identities = 279/383 (72%), Positives = 293/383 (75%), Gaps = 30/383 (7%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
MTTRIAPGVGANLLGQHSAERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTN HQ YGF+E+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASD+AIE+M GQYL
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
NRQITVSYAYKKDTKGERHGTPAER+LAA+NPTAQKSRPHTLFA GPPS +APQ NG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 237
Query: 241 PAPVPPRPFANG-VAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMP 299
PRPFANG + P PI + PPP P Q Q PP W Q Q Q M
Sbjct: 238 -----PRPFANGSMQPVPIPAPRQPPPPPP--QVYQTQPPS---WPSQPQ-----QHSMV 282
Query: 300 PPMQQFRPPHSMQMPPPPPPQGMQ-----GPPRPLPPPSVMAGQQQVWRPPPPPQQQGGH 354
PP QFRPP MPPPPPPQ + G PRP PPP M Q PP QQQGG
Sbjct: 283 PPPMQFRPPQG--MPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGP 340
Query: 355 PM----GYPQNSMPPPPPPNHHG 373
P Y + M PPPP H G
Sbjct: 341 PQQQQPPYQHHHMSMPPPPPHQG 363
Score = 65.9 bits (159), Expect = 2e-09
Identities = 79/303 (26%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
+ N Q + A +++G LD + E+LL++ F G +V N + +D T +
Sbjct: 9 VGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVV-NVYVPKDRVTNLHQN 67
Query: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQ 215
+GFI Y S E +D AI+ +N L + I V+ A +D K G A + +P
Sbjct: 68 YGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA-SQDKKSLDVG--ANLFIGNLDPDVD 124
Query: 216 KSRPHTLF------ASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAP 269
+ + F AS P + + N + F A I+ Q
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA-----AIESMTGQYL 179
Query: 270 AFQPMQMPPPGQQVWHQQQQGQPM--MQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPR 327
+ + + + ++ ++ G P + P Q+ RP M PP + G PR
Sbjct: 180 SNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPR 239
Query: 328 P-----LPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP----QNSMPPPP----PPNHHGM 374
P + P + A +Q PPPPPQ P +P Q+SM PPP PP GM
Sbjct: 240 PFANGSMQPVPIPAPRQP---PPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPP--QGM 294
Query: 375 RPP 377
PP
Sbjct: 295 PPP 297
>gb|AAK59656.1| putative spliceosome associated protein [Arabidopsis thaliana]
Length = 363
Score = 523 bits (1347), Expect = e-147
Identities = 278/383 (72%), Positives = 293/383 (75%), Gaps = 30/383 (7%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
MTTRIAPGVGANLLGQHSAERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTN HQ YGF+E+RSEEDADYAIKVLNMIKL+GKP+RVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPMRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASD+AIE+M GQYL
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
NRQITVSYAYKKDTKGERHGTPAER+LAA+NPTAQKSRPHTLFA GPPS +APQ NG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 237
Query: 241 PAPVPPRPFANG-VAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMP 299
PRPFANG + P PI + PPP P Q Q PP W Q Q Q M
Sbjct: 238 -----PRPFANGSMQPVPIPAPRQPPPPPP--QVYQTQPPS---WPSQPQ-----QHSMV 282
Query: 300 PPMQQFRPPHSMQMPPPPPPQGMQ-----GPPRPLPPPSVMAGQQQVWRPPPPPQQQGGH 354
PP QFRPP MPPPPPPQ + G PRP PPP M Q PP QQQGG
Sbjct: 283 PPPMQFRPPQG--MPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGP 340
Query: 355 PM----GYPQNSMPPPPPPNHHG 373
P Y + M PPPP H G
Sbjct: 341 PQQQQPPYQHHHMSMPPPPPHQG 363
Score = 64.7 bits (156), Expect = 4e-09
Identities = 78/303 (25%), Positives = 123/303 (39%), Gaps = 35/303 (11%)
Query: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
+ N Q + A +++G LD + E+LL++ F G +V N + +D T +
Sbjct: 9 VGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVV-NVYVPKDRVTNLHQN 67
Query: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQ 215
+GFI Y S E +D AI+ +N L + + V+ A +D K G A + +P
Sbjct: 68 YGFIEYRSEEDADYAIKVLNMIKLHGKPMRVNKA-SQDKKSLDVG--ANLFIGNLDPDVD 124
Query: 216 KSRPHTLF------ASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAP 269
+ + F AS P + + N + F A I+ Q
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA-----AIESMTGQYL 179
Query: 270 AFQPMQMPPPGQQVWHQQQQGQPM--MQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPR 327
+ + + + ++ ++ G P + P Q+ RP M PP + G PR
Sbjct: 180 SNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPR 239
Query: 328 P-----LPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP----QNSMPPPP----PPNHHGM 374
P + P + A +Q PPPPPQ P +P Q+SM PPP PP GM
Sbjct: 240 PFANGSMQPVPIPAPRQP---PPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPP--QGM 294
Query: 375 RPP 377
PP
Sbjct: 295 PPP 297
>gb|AAM65408.1| putative spliceosome associated protein [Arabidopsis thaliana]
Length = 363
Score = 521 bits (1342), Expect = e-146
Identities = 278/383 (72%), Positives = 292/383 (75%), Gaps = 30/383 (7%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
MTT IAPGVGANLLGQHSAERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTLIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTN HQ YGF+E+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASD+AIE+M GQYL
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
NRQITVSYAYKKDTKGERHGTPAER+LAA+NPTAQKSRPHTLFA GPPS +APQ NG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 237
Query: 241 PAPVPPRPFANG-VAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMP 299
PRPFANG + P PI + PPP P Q Q PP W Q Q Q M
Sbjct: 238 -----PRPFANGSMQPVPIPAPRQPPPPPP--QVYQTQPPS---WPSQPQ-----QHSMV 282
Query: 300 PPMQQFRPPHSMQMPPPPPPQGMQ-----GPPRPLPPPSVMAGQQQVWRPPPPPQQQGGH 354
PP QFRPP MPPPPPPQ + G PRP PPP M Q PP QQQGG
Sbjct: 283 PPPMQFRPPQG--MPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGP 340
Query: 355 PM----GYPQNSMPPPPPPNHHG 373
P Y + M PPPP H G
Sbjct: 341 PQQQQPPYQYHHMSMPPPPPHQG 363
Score = 67.0 bits (162), Expect = 9e-10
Identities = 81/311 (26%), Positives = 125/311 (40%), Gaps = 35/311 (11%)
Query: 88 MIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRD 147
M L + N Q + A +++G LD + E+LL++ F G +V N + +D
Sbjct: 1 MTTLIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVV-NVYVPKD 59
Query: 148 PDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVL 207
T + +GFI Y S E +D AI+ +N L + I V+ A +D K G A +
Sbjct: 60 RVTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA-SQDKKSLDVG--ANLFI 116
Query: 208 AASNPTAQKSRPHTLF------ASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVI 261
+P + + F AS P + + N + F A I
Sbjct: 117 GNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA-----AI 171
Query: 262 QPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPM--MQQGMPPPMQQFRPPHSMQMPPPPPP 319
+ Q + + + + ++ ++ G P + P Q+ RP M PP
Sbjct: 172 ESMTGQYLSNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSA 231
Query: 320 QGMQGPPRP-----LPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP----QNSMPPPP--- 367
+ G PRP + P + A +Q PPPPPQ P +P Q+SM PPP
Sbjct: 232 PQVNGLPRPFANGSMQPVPIPAPRQP---PPPPPQVYQTQPPSWPSQPQQHSMVPPPMQF 288
Query: 368 -PPNHHGMRPP 377
PP GM PP
Sbjct: 289 RPP--QGMPPP 297
>gb|AAH67655.1| Splicing factor 3b, subunit 4 [Danio rerio]
gi|34193906|gb|AAH56532.1| Splicing factor 3b, subunit 4
[Danio rerio] gi|52694662|ref|NP_705947.3| splicing
factor 3b, subunit 4 [Danio rerio]
Length = 400
Score = 405 bits (1042), Expect = e-112
Identities = 225/405 (55%), Positives = 258/405 (63%), Gaps = 58/405 (14%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPP--SLPNAPQA--NGTIPAPVPPRPFANGVA 254
HG+ AER+LAA NP +Q RPH LFA PP S+P +P P P P A
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPIPGMPPPGAFPPV 246
Query: 255 PPPIHVIQP----------------------PPPQAPAFQPMQMPPPGQQVWHQQQQGQP 292
PPP + P PPP P F P M PPG G P
Sbjct: 247 PPP-GTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGMHPPGMPHMPMPPTGPP 305
Query: 293 MMQQGMPPP--MQQFRPPHSMQMPPPP---PPQ-------------GMQGPPRPLPPPSV 334
M P P Q R P QMPPPP PP+ GM+GPP P+PPP
Sbjct: 306 GMVPPPPGPPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPPMPPPGY 365
Query: 335 MAGQQQVWRPPPPPQQQGGHPMGYPQN-SMPPPPPPNHHGMRPPS 378
AG PP PP P G+ + MPP PP MR P+
Sbjct: 366 GAG------PPRPP------PFGFQRGPPMPPRPPAPRGPMRAPA 398
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>ref|XP_393914.1| PREDICTED: similar to ENSANGP00000011587 [Apis mellifera]
Length = 413
Score = 405 bits (1041), Expect = e-111
Identities = 221/412 (53%), Positives = 260/412 (62%), Gaps = 70/412 (16%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
AERNQDAT YVG LD +++E L+WELFVQ+GPVVNV++PKDRVT HQGYGFVEF EED
Sbjct: 7 AERNQDATIYVGGLDDKVTESLMWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFMGEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS +K+LDVGAN+FIGNLDP+VDEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHQKNLDVGANIFIGNLDPEVDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDP+TGNS+GF FI++ SF+ASD++IEAMNGQYLCNR I+VSYA+K+D KGER
Sbjct: 127 LQTPKIMRDPETGNSKGFAFINFASFDASDASIEAMNGQYLCNRPISVSYAFKRDAKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFAS----GPPSLPNA----------PQANGTIPAPV 244
HG+ AER+LAA NP +Q RPH LFA PP +PN+ PQ + V
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPLAPPPIPNSNTATHQTTHHPQHHVMHGMVV 246
Query: 245 PPRPFANGVAPPPIHVIQP--PPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPM 302
PP P + PP H P PPP + F P +PPP + P + GMPPP+
Sbjct: 247 PPPPPPSTPGPPMGHPPPPPVPPPPSSGFPPASIPPP--PLPPMSMATHPPLPPGMPPPL 304
Query: 303 ----------QQFRP---------------PHSMQMPPPPPPQ----------GMQGPPR 327
QQ P P Q PPPPPP G PP
Sbjct: 305 PPMPVPTSQAQQTTPRMIAPPPTAHWGVSGPPQGQFPPPPPPSSTGAPPPPQFGQFQPPP 364
Query: 328 PLPPPSVMAGQQQVWR-PPPPPQQQGGHP--------MGYPQNSMPPPPPPN 370
P PPP+ WR PPPPP QGG P +P PPPPPP+
Sbjct: 365 PRPPPT--------WRHPPPPPVSQGGPPPPPPPQFRPPFPPRGPPPPPPPH 408
Score = 62.8 bits (151), Expect = 2e-08
Identities = 51/157 (32%), Positives = 60/157 (37%), Gaps = 61/157 (38%)
Query: 227 PPSLPNAP----QANGTIPAPVPPRPFAN-GVAPPPIHVIQPPPPQA-------PAFQPM 274
PP LP P QA T P + P P A+ GV+ PP PPPP + P F
Sbjct: 301 PPPLPPMPVPTSQAQQTTPRMIAPPPTAHWGVSGPPQGQFPPPPPPSSTGAPPPPQFGQF 360
Query: 275 QMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSV 334
Q PPP + P + PPP+ Q P PPPPPPQ
Sbjct: 361 QPPPP---------RPPPTWRHPPPPPVSQGGP------PPPPPPQ-------------- 391
Query: 335 MAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNH 371
+RPP PP+ PPPPPP H
Sbjct: 392 -------FRPPFPPRG-------------PPPPPPPH 408
>gb|AAM28203.2| splicing factor 3b subunit 4 [Danio rerio]
Length = 400
Score = 404 bits (1037), Expect = e-111
Identities = 224/405 (55%), Positives = 257/405 (63%), Gaps = 58/405 (14%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDA YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPP--SLPNAPQA--NGTIPAPVPPRPFANGVA 254
HG+ AER+LAA NP +Q RPH LFA PP S+P +P P P P A
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSMPTPVMTALGAAMPIPGMPPPGAFPPV 246
Query: 255 PPPIHVIQP----------------------PPPQAPAFQPMQMPPPGQQVWHQQQQGQP 292
PPP + P PPP P F P M PPG G P
Sbjct: 247 PPP-GTMPPGMPPGMPMPPAPGTPAPQGGGGPPPGHPPFPPAGMHPPGMPHMPMPPTGPP 305
Query: 293 MMQQGMPPP--MQQFRPPHSMQMPPPP---PPQ-------------GMQGPPRPLPPPSV 334
M P P Q R P QMPPPP PP+ GM+GPP P+PPP
Sbjct: 306 GMVPPPPGPPGSNQPRAPPPPQMPPPPMGVPPRGPFGPPMGPPMHPGMRGPPPPMPPPGY 365
Query: 335 MAGQQQVWRPPPPPQQQGGHPMGYPQN-SMPPPPPPNHHGMRPPS 378
AG PP PP P G+ + MPP PP MR P+
Sbjct: 366 GAG------PPRPP------PFGFQRGPPMPPRPPAPRGPMRAPA 398
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>ref|XP_540295.1| PREDICTED: similar to Splicing factor 3b, subunit 4 [Canis
familiaris]
Length = 424
Score = 400 bits (1028), Expect = e-110
Identities = 221/389 (56%), Positives = 251/389 (63%), Gaps = 36/389 (9%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPPPPQAPAF----QPMQMPPPGQQVWHQQQQGQPMMQQGM 298
PVPP G PP I PPPP P P P H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPSGM 301
Query: 299 P-PPMQQFR----PPHSMQMP-PPPPPQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQ 350
P P M Q + PH + P PP G Q PPRP PP G + PP PP
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP-PPGMPHPGPPPMGLPPRGPPFGS 360
Query: 351 QGGHPMGYPQNSMPPPPP--PNHHGMRPP 377
GHP P + M PPP P H PP
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPPHGYTGPP 389
Score = 67.4 bits (163), Expect = 7e-10
Identities = 53/158 (33%), Positives = 61/158 (38%), Gaps = 22/158 (13%)
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPI 258
HG P+ A +P S PH SG P P + A P + A PP
Sbjct: 273 HGPPSAGTPGAGHPGHGHSHPHPFPPSGMPH----PGMSQMQLAHHGPHGLGHPHAGPPG 328
Query: 259 HVIQPPPPQAPAFQ-----PMQMPPPGQQVWHQQQQGQPMMQQGM--PPPMQQFRPPHSM 311
QPPP P PM +PP G PM GM PPP+ PPH
Sbjct: 329 SGGQPPPRPPPGMPHPGPPPMGLPPRGPPFGSPMGHPGPMPPHGMRGPPPLM---PPHGY 385
Query: 312 QMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQ 349
PP PPP G Q P P P P+ RPP PP+
Sbjct: 386 TGPPRPPPYGYQRGPLPPPRPTP--------RPPVPPR 415
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 49.3 bits (116), Expect = 2e-04
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 301 PMQQFRPPHSMQMPPPPPPQ---------GMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P+ Q PH + PPPP G PP +PPP PPP
Sbjct: 200 PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF---------PPPVPPP 250
Query: 352 GGHPMGYPQNSMPPPPPPNHHGMRPPS 378
G P G P PPP PP G PPS
Sbjct: 251 GALPPGIPPAMPPPPMPPGAGGHGPPS 277
>emb|CAI12554.1| splicing factor 3b, subunit 4, 49kDa [Homo sapiens]
gi|55960588|emb|CAI12648.1| splicing factor 3b, subunit
4, 49kDa [Homo sapiens] gi|60688325|gb|AAH90883.1|
Splicing factor 3b, subunit 4 [Homo sapiens]
gi|15530216|gb|AAH13886.1| Splicing factor 3b, subunit 4
[Homo sapiens] gi|13279089|gb|AAH04273.1| Splicing
factor 3b, subunit 4 [Homo sapiens]
gi|2500587|sp|Q15427|SF3B4_HUMAN Splicing factor 3B
subunit 4 (Spliceosome associated protein 49) (SAP 49)
(SF3b50) (Pre-mRNA splicing factor SF3b 49 kDa subunit)
gi|5032069|ref|NP_005841.1| splicing factor 3b, subunit
4 [Homo sapiens] gi|556217|gb|AAA60300.1| spliceosomal
protein
Length = 424
Score = 400 bits (1027), Expect = e-110
Identities = 221/389 (56%), Positives = 251/389 (63%), Gaps = 36/389 (9%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPPPPQAPAF----QPMQMPPPGQQVWHQQQQGQPMMQQGM 298
PVPP G PP I PPPP P P P H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 299 P-PPMQQFR----PPHSMQMP-PPPPPQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQ 350
P P M Q + PH + P PP G Q PPRP PP G + PP PP
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP-PPGMPHPGPPPMGMPPRGPPFGS 360
Query: 351 QGGHPMGYPQNSMPPPPP--PNHHGMRPP 377
GHP P + M PPP P H PP
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPPHGYTGPP 389
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 49.3 bits (116), Expect = 2e-04
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 301 PMQQFRPPHSMQMPPPPPPQ---------GMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P+ Q PH + PPPP G PP +PPP PPP
Sbjct: 200 PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF---------PPPVPPP 250
Query: 352 GGHPMGYPQNSMPPPPPPNHHGMRPPS 378
G P G P PPP PP G PPS
Sbjct: 251 GALPPGIPPAMPPPPMPPGAAGHGPPS 277
>ref|NP_694693.1| splicing factor 3b, subunit 4 [Mus musculus]
gi|62643914|ref|XP_574996.1| PREDICTED: splicing factor
3b, subunit 4 (predicted) [Rattus norvegicus]
gi|55391441|gb|AAH85273.1| Splicing factor 3b, subunit 4
[Mus musculus] gi|58865472|ref|NP_001011951.1| splicing
factor 3b, subunit 4 (predicted) [Rattus norvegicus]
gi|50925599|gb|AAH78997.1| Splicing factor 3b, subunit 4
(predicted) [Rattus norvegicus]
gi|37537250|gb|AAH24418.3| Splicing factor 3b, subunit 4
[Mus musculus] gi|20071686|gb|AAH26567.1| Splicing
factor 3b, subunit 4 [Mus musculus]
gi|26338948|dbj|BAC33145.1| unnamed protein product [Mus
musculus]
Length = 424
Score = 400 bits (1027), Expect = e-110
Identities = 221/389 (56%), Positives = 251/389 (63%), Gaps = 36/389 (9%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPPPPQAPAF----QPMQMPPPGQQVWHQQQQGQPMMQQGM 298
PVPP G PP I PPPP P P P H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPPMPPGAGGHGPPAAGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 299 P-PPMQQFR----PPHSMQMP-PPPPPQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQ 350
P P M Q + PH + P PP G Q PPRP PP G + PP PP
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP-PPGMPHPGPPPMGMPPRGPPFGS 360
Query: 351 QGGHPMGYPQNSMPPPPP--PNHHGMRPP 377
GHP P + M PPP P H PP
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPPHGYTGPP 389
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>ref|XP_582525.1| PREDICTED: similar to Splicing factor 3b, subunit 4 [Bos taurus]
Length = 424
Score = 400 bits (1027), Expect = e-110
Identities = 221/389 (56%), Positives = 251/389 (63%), Gaps = 36/389 (9%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPPPPQAPAF----QPMQMPPPGQQVWHQQQQGQPMMQQGM 298
PVPP G PP I PPPP P P P H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPPMPPGAGGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 299 P-PPMQQFR----PPHSMQMP-PPPPPQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQ 350
P P M Q + PH + P PP G Q PPRP PP G + PP PP
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP-PPGMPHPGPPPMGMPPRGPPFGS 360
Query: 351 QGGHPMGYPQNSMPPPPP--PNHHGMRPP 377
GHP P + M PPP P H PP
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPPHGYTGPP 389
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 49.3 bits (116), Expect = 2e-04
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 301 PMQQFRPPHSMQMPPPPPPQ---------GMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P+ Q PH + PPPP G PP +PPP PPP
Sbjct: 200 PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF---------PPPVPPP 250
Query: 352 GGHPMGYPQNSMPPPPPPNHHGMRPPS 378
G P G P PPP PP G PPS
Sbjct: 251 GALPPGIPPAMPPPPMPPGAGGHGPPS 277
>dbj|BAD97042.1| splicing factor 3b, subunit 4 variant [Homo sapiens]
Length = 424
Score = 398 bits (1022), Expect = e-109
Identities = 220/389 (56%), Positives = 251/389 (63%), Gaps = 36/389 (9%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK+++MIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMDMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPPPPQAPAF----QPMQMPPPGQQVWHQQQQGQPMMQQGM 298
PVPP G PP I PPPP P P P H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPPMPPGAAGHGPPSAGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 299 P-PPMQQFR----PPHSMQMP-PPPPPQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQ 350
P P M Q + PH + P PP G Q PPRP PP G + PP PP
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPPGSGGQPPPRP-PPGMPHPGPPPMGMPPRGPPFGS 360
Query: 351 QGGHPMGYPQNSMPPPPP--PNHHGMRPP 377
GHP P + M PPP P H PP
Sbjct: 361 PMGHPGPMPPHGMRGPPPLMPPHGYTGPP 389
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 49.3 bits (116), Expect = 2e-04
Identities = 30/87 (34%), Positives = 33/87 (37%), Gaps = 18/87 (20%)
Query: 301 PMQQFRPPHSMQMPPPPPPQ---------GMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P+ Q PH + PPPP G PP +PPP PPP
Sbjct: 200 PLSQADRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF---------PPPVPPP 250
Query: 352 GGHPMGYPQNSMPPPPPPNHHGMRPPS 378
G P G P PPP PP G PPS
Sbjct: 251 GALPPGIPPAMPPPPMPPGAAGHGPPS 277
>gb|AAH77458.1| MGC82420 protein [Xenopus laevis]
Length = 383
Score = 395 bits (1015), Expect = e-108
Identities = 222/387 (57%), Positives = 250/387 (64%), Gaps = 41/387 (10%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI+Y SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPP---------SLPNAPQANGTIPAPVPPRPF 249
HG+ AER+LAA NP +Q RPH LFA PP SL +A A PVPP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPAVITSLTSAVAAGLPTFPPVPP--- 243
Query: 250 ANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPH 309
G PP I PPPP +P + GQ Q P GM P MQ P
Sbjct: 244 -PGAMPPGIPPSMPPPPMSP------VTGAGQVAGASSQVPLPFQSTGMHPGMQMQMPHP 296
Query: 310 SM------------QMPPPPPPQGMQGPPRPLPPPSVMA--GQQQVWRPPPPPQQQGG-- 353
S+ PP PPP GM PPR PP M G RPPP G
Sbjct: 297 SIPGASPLGTRPPGMGPPGPPPMGM--PPR-APPFGAMGHPGMPPGMRPPPLMPPYNGPP 353
Query: 354 --HPMGYPQNSMP-PPPPPNHHGMRPP 377
P GY + MP P P P MR P
Sbjct: 354 RPPPYGYQRTPMPIPRPAPPRPPMRLP 380
Score = 55.5 bits (132), Expect = 3e-06
Identities = 29/94 (30%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ + S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINYASFDASDAAIEAMNGQYLCNRPITVSYA 177
>gb|AAH45264.1| Spx-prov protein [Xenopus laevis]
Length = 377
Score = 394 bits (1012), Expect = e-108
Identities = 218/372 (58%), Positives = 248/372 (66%), Gaps = 30/372 (8%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI+Y SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINYASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPP---------SLPNAPQANGTIPAPVPPRPF 249
HG+ AER+LAA NP +Q RPH LFA PP SL +A A PVPP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPAVITSLTSAVAAGIPTFPPVPP--- 243
Query: 250 ANGVAPPPIHVIQPPPPQAP------AFQPMQMPPPGQQV----WHQQQQGQPMMQQGMP 299
G PP I PPPP +P A Q+P P Q Q Q P + P
Sbjct: 244 -PGAMPPGIPPSMPPPPMSPVTGAGQATAAPQVPLPFQSTAMHPGMQMQIPHPSIPGTRP 302
Query: 300 PPMQQFRPPHSMQMPPPPPPQGMQGPPRPLP---PPSVMAGQQQVWRPPPPPQQQGGHPM 356
P M PP M MPP PP G G P P PP +M RPPP Q+ P+
Sbjct: 303 PGMGPPGPP-PMGMPPRAPPFGAMGHPGMPPGMRPPPLMPPYNGPPRPPPYGYQRAPLPL 361
Query: 357 GYPQNSMPPPPP 368
P PP PP
Sbjct: 362 PRP---APPRPP 370
Score = 55.5 bits (132), Expect = 3e-06
Identities = 29/94 (30%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ + S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINYASFDASDAAIEAMNGQYLCNRPITVSYA 177
>gb|AAH61357.1| Spx-prov protein [Xenopus tropicalis] gi|45360881|ref|NP_989116.1|
Spx-prov protein [Xenopus tropicalis]
Length = 388
Score = 393 bits (1009), Expect = e-108
Identities = 216/378 (57%), Positives = 245/378 (64%), Gaps = 31/378 (8%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+ERNQDAT YVG LD ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVGAN+FIGNLDP++DEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPP---------SLPNAPQANGTIPAPVPPRPF 249
HG+ AER+LAA NP +Q RPH LFA PP SL +A A PVPP
Sbjct: 187 HGSAAERLLAAQNPLSQADRPHQLFADAPPPPSVPAVITSLTSAVAAGMPTFPPVPP--- 243
Query: 250 ANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQV--WHQQQQGQPMMQQGMP-------- 299
G PP I PPPP +P Q QV Q P MQ MP
Sbjct: 244 -PGAMPPGIPPSMPPPPMSPVTGAGQAAAAAPQVPLPFQSAAMHPGMQMQMPHPSIPGAS 302
Query: 300 -----PPMQQFRPPHSMQMPPPPPPQGMQGPPRPLP---PPSVMAGQQQVWRPPPPPQQQ 351
PP P M MPP PP G G P P PP +M RPPP Q+
Sbjct: 303 PLGTRPPGMGPPGPPPMGMPPRAPPFGAMGHPGMPPGMRPPPLMPPYNGPPRPPPYGYQR 362
Query: 352 GGHPMGYPQNSMPPPPPP 369
P+ P P PP P
Sbjct: 363 APVPLPRPAPRPPAPPRP 380
Score = 56.6 bits (135), Expect = 1e-06
Identities = 30/94 (31%), Positives = 51/94 (53%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + A ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
>emb|CAB60993.2| Hypothetical protein C08B11.5 [Caenorhabditis elegans]
gi|55977846|sp|Q09442|YP85_CAEEL Hypothetical
RNA-binding protein C08B11.5 in chromosome II
Length = 388
Score = 388 bits (996), Expect = e-106
Identities = 211/391 (53%), Positives = 252/391 (63%), Gaps = 50/391 (12%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD ++SE +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD+A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 200 GTPAERVLAASNPTAQKSRPHTLFASGPPSLP-NAPQANGTIPA---------------- 242
GT AER+LAA NP K RPH +F+ P +P N P A + A
Sbjct: 188 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPP 247
Query: 243 --------------PVPPRPFANGVAPPPIHVI------QPPPPQAPAFQPMQMPPPGQQ 282
PVPP P + PPP+ PPPP + + P PPPG+
Sbjct: 248 LMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT 307
Query: 283 VWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQ---GPPRPLPPPSVMAGQQ 339
G P PPP +F PP MPPPPPP GM+ G P P PP AG
Sbjct: 308 PGPPGMPGMP-----PPPPPSRFGPPGMGGMPPPPPP-GMRYPGGMPPPPPPRYPSAGPG 361
Query: 340 QVWRPPPPPQQQGGHPMGYPQNSMPPPPPPN 370
PPPPP + P G+ +PPPPPP+
Sbjct: 362 MY--PPPPPSRPPAPPSGH--GMIPPPPPPS 388
>gb|AAC47514.1| RRM-type RNA binding protein
Length = 398
Score = 388 bits (996), Expect = e-106
Identities = 211/391 (53%), Positives = 252/391 (63%), Gaps = 50/391 (12%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD ++SE +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 18 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 77
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 78 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 137
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD+A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 138 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 197
Query: 200 GTPAERVLAASNPTAQKSRPHTLFASGPPSLP-NAPQANGTIPA---------------- 242
GT AER+LAA NP K RPH +F+ P +P N P A + A
Sbjct: 198 GTAAERMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPP 257
Query: 243 --------------PVPPRPFANGVAPPPIHVI------QPPPPQAPAFQPMQMPPPGQQ 282
PVPP P + PPP+ PPPP + + P PPPG+
Sbjct: 258 LMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT 317
Query: 283 VWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQ---GPPRPLPPPSVMAGQQ 339
G P PPP +F PP MPPPPPP GM+ G P P PP AG
Sbjct: 318 PGPPGMPGMP-----PPPPPSRFGPPGMGGMPPPPPP-GMRYPGGMPPPPPPRYPSAGPG 371
Query: 340 QVWRPPPPPQQQGGHPMGYPQNSMPPPPPPN 370
PPPPP + P G+ +PPPPPP+
Sbjct: 372 MY--PPPPPSRPPAPPSGH--GMIPPPPPPS 398
>ref|XP_587412.1| PREDICTED: similar to Splicing factor 3b, subunit 4 [Bos taurus]
Length = 384
Score = 387 bits (993), Expect = e-106
Identities = 214/384 (55%), Positives = 245/384 (63%), Gaps = 44/384 (11%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
+E NQDAT YVG L ++SE LLWELF+QAGPVVN ++PKDRVT QHQGYGFVEF SEED
Sbjct: 7 SEXNQDATVYVGGLYKKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS K+LDVG N+FIGNLDP++DEKLLYDTFSAFG I
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVGPNIFIGNLDPEIDEKLLYDTFSAFGAI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDPDTGNS+G+ FI++ SF+ASD+AIEAMNGQYLCNR ITVSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQ----------------ANGTIPA 242
HG+ AER+LAA NP +Q RPH LFA PP P+AP G+ P
Sbjct: 187 HGSAAERLLAAQNPLSQPDRPHQLFADAPPP-PSAPNPVVSSLGSGLPPPGMPPPGSFPP 245
Query: 243 PVPPRPFANGVAPPPIHVIQPP---PPQAPAFQPMQMPPPGQ-QVWHQQQQGQPMMQQGM 298
PVPP G PP I PP PP A P + PG H P GM
Sbjct: 246 PVPP----PGALPPGIPPAMPPPSMPPGAGGHGPPSVGTPGAGHPGHGHSHPHPFPPGGM 301
Query: 299 P-PPMQQFR----PPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGG 353
P P M Q + PH + P PP G G P P PPP + P P P G
Sbjct: 302 PHPGMSQMQLAHHGPHGLGHPHAGPP-GSGGQPPPRPPPGM---------PHPGPPPMGM 351
Query: 354 HPMGYPQNSMPPPPPPNHHGMRPP 377
P G P +PPP P RPP
Sbjct: 352 PPRGPPGGPLPPPRPT----PRPP 371
Score = 55.1 bits (131), Expect = 4e-06
Identities = 29/94 (30%), Positives = 50/94 (52%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H+ + ++GNLDP+I E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHNKNLDVGPNIFIGNLDPEIDEKLLYDTFSAFGAILQTPKIMRDPDTGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
Y F+ F S + +D AI+ +N L +PI V+ A
Sbjct: 144 YAFINFASFDASDAAIEAMNGQYLCNRPITVSYA 177
Score = 45.4 bits (106), Expect = 0.003
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 18/87 (20%)
Query: 301 PMQQFRPPHSMQMPPPPPPQ---------GMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P+ Q PH + PPPP G PP +PPP PPP
Sbjct: 200 PLSQPDRPHQLFADAPPPPSAPNPVVSSLGSGLPPPGMPPPGSF---------PPPVPPP 250
Query: 352 GGHPMGYPQNSMPPPPPPNHHGMRPPS 378
G P G P PP PP G PPS
Sbjct: 251 GALPPGIPPAMPPPSMPPGAGGHGPPS 277
>ref|XP_321584.2| ENSANGP00000011587 [Anopheles gambiae str. PEST]
gi|55233804|gb|EAA00839.2| ENSANGP00000011587 [Anopheles
gambiae str. PEST]
Length = 340
Score = 386 bits (992), Expect = e-106
Identities = 209/366 (57%), Positives = 245/366 (66%), Gaps = 40/366 (10%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
AERNQDAT YVG LD +++E LLWELFVQ+GPVVNV++PKDRVT HQGYGFVEF EED
Sbjct: 7 AERNQDATIYVGGLDDKVTETLLWELFVQSGPVVNVHMPKDRVTQMHQGYGFVEFLGEED 66
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
ADYAIK++NMIKLYGKPIRVNKAS +KSLDVGAN+FIGNLD +VDEKLLYDTFSAFGVI
Sbjct: 67 ADYAIKIMNMIKLYGKPIRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVI 126
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
+ PKIMRDP+TGNS+GF FI++ SFEASD+A++AMNGQYLCNR I+VSYA+KKD+KGER
Sbjct: 127 LQTPKIMRDPETGNSKGFAFINFASFEASDAAMDAMNGQYLCNRPISVSYAFKKDSKGER 186
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPI 258
HG+ AER+LAA NP + RPH LFA P P + P + + PPP+
Sbjct: 187 HGSAAERLLAAQNPLSHADRPHQLFADAP------------APPSMHPGMMGHPMMPPPL 234
Query: 259 HVIQPPPPQAPAF-QPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPP 317
+ PPPP P QP MPPP Q G PPP+ PP +Q PP
Sbjct: 235 -LAPPPPPTNPVIPQPPIMPPP------QAPSGYGGPGAIPPPPLP---PPLGVQPQPPL 284
Query: 318 P--PQGMQGPPRPLPPPSVMAGQQQVWRPP--PPPQQQGGHPMGYPQNSMPPPPPPNHHG 373
P P G+ PPR +PPP W+ P P P G P P PPPPP
Sbjct: 285 PAAPMGIPPPPRMIPPPP--------WQQPGAPAPPAPVGAPPPAPSAPFPPPPP----- 331
Query: 374 MRPPSG 379
PP+G
Sbjct: 332 SFPPAG 337
Score = 50.1 bits (118), Expect = 1e-04
Identities = 27/94 (28%), Positives = 48/94 (50%), Gaps = 1/94 (1%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNV-YVPKDRVTNQHQG 67
+ N H + A ++GNLD ++ E+LL++ F G ++ + +D T +G
Sbjct: 84 IRVNKASAHQKSLDVGANIFIGNLDLEVDEKLLYDTFSAFGVILQTPKIMRDPETGNSKG 143
Query: 68 YGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKA 101
+ F+ F S E +D A+ +N L +PI V+ A
Sbjct: 144 FAFINFASFEASDAAMDAMNGQYLCNRPISVSYA 177
>pir||JC5437 spliceosome-associated protein 49 - Caenorhabditis elegans
Length = 388
Score = 384 bits (985), Expect = e-105
Identities = 209/391 (53%), Positives = 251/391 (63%), Gaps = 50/391 (12%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
ERNQDAT YVG LD ++SE +LWEL VQAGPVV+V +PKDRVT HQG+GFVEF EEDA
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIV 139
DYAIK+LNMIKLYGKPI+VNKAS +K++DVGAN+F+GNLDP+VDEKLLYDTFSAFGVI+
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASAHEKNMDVGANIFVGNLDPEVDEKLLYDTFSAFGVIL 127
Query: 140 TNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERH 199
PKIMRD D+G S+GF FI++ SFEASD+A+EAMNGQ+LCNR ITVSYA+K+D+KGERH
Sbjct: 128 QVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKRDSKGERH 187
Query: 200 GTPAERVLAASNPTAQKSRPHTLFASGPPSLP-NAPQANGTIPA---------------- 242
GT A+ +LAA NP K RPH +F+ P +P N P A + A
Sbjct: 188 GTAADWMLAAQNPLFPKDRPHQVFSDVPLGVPANTPLAMPGVHAAIAAHATGRPGYQPPP 247
Query: 243 --------------PVPPRPFANGVAPPPIHVI------QPPPPQAPAFQPMQMPPPGQQ 282
PVPP P + PPP+ PPPP + + P PPPG+
Sbjct: 248 LMGMAQSGYQGQYPPVPPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRT 307
Query: 283 VWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQ---GPPRPLPPPSVMAGQQ 339
G P PPP +F PP MPPPPPP GM+ G P P PP AG
Sbjct: 308 PGPPGMPGMP-----PPPPPSRFGPPGMGGMPPPPPP-GMRYPGGMPPPPPPRYPSAGPG 361
Query: 340 QVWRPPPPPQQQGGHPMGYPQNSMPPPPPPN 370
PPPPP + P G+ +PPPPPP+
Sbjct: 362 MY--PPPPPSRPPAPPSGH--GMIPPPPPPS 388
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.315 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 885,297,331
Number of Sequences: 2540612
Number of extensions: 54178589
Number of successful extensions: 768049
Number of sequences better than 10.0: 22825
Number of HSP's better than 10.0 without gapping: 7480
Number of HSP's successfully gapped in prelim test: 16161
Number of HSP's that attempted gapping in prelim test: 310421
Number of HSP's gapped (non-prelim): 134455
length of query: 379
length of database: 863,360,394
effective HSP length: 130
effective length of query: 249
effective length of database: 533,080,834
effective search space: 132737127666
effective search space used: 132737127666
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)
Medicago: description of AC139882.5