BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139709.6 + phase: 0
(138 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA33667.1| ribosomal protein S11 (AA 1-138) [Pisum sativum]... 255 1e-67
dbj|BAB33229.1| ribosomal protein S11 [Lotus corniculatus var. j... 248 2e-65
emb|CAA77377.1| ribosomal protein S11 [Nicotiana tabacum] gi|200... 243 6e-64
gb|AAN04897.1| ribosomal protein S11 [Vigna angularis] gi|484748... 243 6e-64
ref|YP_086998.1| ribosomal protein S11 [Panax ginseng] gi|512353... 243 7e-64
emb|CAJ00792.1| ribosomal protein S11 [Cucumis sativus] 242 1e-63
emb|CAD45139.1| ribosomal protein S11 [Amborella trichopoda] gi|... 241 2e-63
emb|CAB88760.1| ribosomal protein S11 [Spinacia oleracea] gi|114... 241 2e-63
emb|CAD28753.1| ribosomal protein S11' [Calycanthus floridus var... 241 4e-63
emb|CAA27213.1| unnamed protein product [Spinacia oleracea] gi|8... 237 4e-62
dbj|BAA84418.1| ribosomal protein S11 [Arabidopsis thaliana] gi|... 234 3e-61
emb|CAF28627.1| ribosomal protein S11 [Nymphaea alba] gi|5034681... 228 3e-59
emb|CAB67192.1| ribosomal protein S11 [Oenothera elata subsp. ho... 212 1e-54
gb|AAA65859.1| ribosomal protein S11 [Epifagus virginiana] gi|11... 204 3e-52
ref|NP_042439.1| ribosomal protein S11 [Pinus thunbergii] gi|744... 198 3e-50
gb|AAO74068.1| ribosomal protein S11 [Pinus koraiensis] gi|29565... 197 3e-50
emb|CAA28118.1| rps11 [Marchantia polymorpha] gi|70940|pir||R3LV... 195 2e-49
ref|NP_777446.1| ribosomal protein S11 [Anthoceros formosae] gi|... 195 2e-49
dbj|BAC85074.1| ribosomal protein S11 [Physcomitrella patens sub... 193 9e-49
gb|AAF43802.1| ribosomal protein S11 [Mesostigma viride] gi|1146... 191 2e-48
>emb|CAA33667.1| ribosomal protein S11 (AA 1-138) [Pisum sativum]
gi|70942|pir||R3PM11 ribosomal protein S11, chloroplast
- garden pea chloroplast gi|12184|emb|CAA28693.1|
unnamed protein product [Pisum sativum]
gi|133727|sp|P06587|RR11_PEA Chloroplast 30S ribosomal
protein S11
Length = 138
Score = 255 bits (652), Expect = 1e-67
Identities = 127/138 (92%), Positives = 132/138 (95%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAKSIPKIGSRK GRIGSRKHPRKIPKGVIY+QASFNNTIVTVTDVRGRVISWSSAGSCG
Sbjct: 1 MAKSIPKIGSRKTGRIGSRKHPRKIPKGVIYIQASFNNTIVTVTDVRGRVISWSSAGSCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAI+TVV+QGMQRA V IKGPGLGRDAALRAI RSGILL+ IR
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIQTVVEQGMQRAEVRIKGPGLGRDAALRAIYRSGILLKVIR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCRAPKKRRV
Sbjct: 121 DVTPLPHNGCRAPKKRRV 138
>dbj|BAB33229.1| ribosomal protein S11 [Lotus corniculatus var. japonicus]
gi|13518471|ref|NP_084830.1| ribosomal protein S11
[Lotus corniculatus var. japonicus]
gi|48474946|sp|Q9BBQ3|RR11_LOTJA Chloroplast 30S
ribosomal protein S11
Length = 138
Score = 248 bits (633), Expect = 2e-65
Identities = 123/138 (89%), Positives = 129/138 (93%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK IPKIGSRKN R GSRKH RKIPKG+I+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1 MAKPIPKIGSRKNARSGSRKHLRKIPKGIIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAIRTV DQGMQRA V+IKGPGLGRDAALRAI RSGILL FIR
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRTVADQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFIR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR+PKKRRV
Sbjct: 121 DVTPMPHNGCRSPKKRRV 138
>emb|CAA77377.1| ribosomal protein S11 [Nicotiana tabacum]
gi|20068364|emb|CAC88077.1| ribosomal protein S11
[Atropa belladonna] gi|28261750|ref|NP_783264.1|
ribosomal protein S11 [Atropa belladonna]
gi|10442806|gb|AAG15579.1| ribosomal protein S11
[synthetic construct] gi|11465991|ref|NP_054533.1|
ribosomal protein S11 [Nicotiana tabacum]
gi|62288968|sp|P69656|RR11_TOBAC Chloroplast 30S
ribosomal protein S11 gi|62288967|sp|P69655|RR11_ATRBE
Chloroplast 30S ribosomal protein S11
gi|225229|prf||1211235BL ribosomal protein S11
Length = 138
Score = 243 bits (621), Expect = 6e-64
Identities = 121/138 (87%), Positives = 130/138 (93%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK+IPKI SR+NGRIGSRK R+IPKGVI+VQASFNNTIVTVTDVRGRV+SWSSAG+ G
Sbjct: 1 MAKAIPKISSRRNGRIGSRKGARRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTSG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAAANAIRTVVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>gb|AAN04897.1| ribosomal protein S11 [Vigna angularis]
gi|48474870|sp|Q8MCA0|RR11_PHAAN Chloroplast 30S
ribosomal protein S11
Length = 138
Score = 243 bits (621), Expect = 6e-64
Identities = 120/138 (86%), Positives = 128/138 (91%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAKSIPK GSRKN RIGSR RKIPKG+I+VQASFNNTIVT+TDVRGRVISWSSAG+CG
Sbjct: 1 MAKSIPKTGSRKNVRIGSRNQTRKIPKGIIHVQASFNNTIVTITDVRGRVISWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAIRTV DQGMQRA ++IKGPGLGRDAALRAI RSGILL FIR
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRTVSDQGMQRAEIMIKGPGLGRDAALRAIRRSGILLNFIR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR+PKKRRV
Sbjct: 121 DVTPMPHNGCRSPKKRRV 138
>ref|YP_086998.1| ribosomal protein S11 [Panax ginseng] gi|51235345|gb|AAT98541.1|
ribosomal protein S11 [Panax ginseng]
gi|62287416|sp|Q68RX4|RR11_PANGI Chloroplast 30S
ribosomal protein S11
Length = 138
Score = 243 bits (620), Expect = 7e-64
Identities = 119/138 (86%), Positives = 130/138 (93%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK+IP+ GSR++GRIGSRK R+IPKGVI+VQASFNNTIVTVTDVRGRV+SWSSAG+CG
Sbjct: 1 MAKAIPRSGSRRSGRIGSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAIRTVVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLTFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAJ00792.1| ribosomal protein S11 [Cucumis sativus]
Length = 138
Score = 242 bits (618), Expect = 1e-63
Identities = 121/138 (87%), Positives = 128/138 (92%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK IP+IGSR+NGRI SRK R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1 MAKPIPRIGSRRNGRISSRKSTRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RSGILL FIR
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRGVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFIR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAD45139.1| ribosomal protein S11 [Amborella trichopoda]
gi|34500946|ref|NP_904131.1| ribosomal protein S11
[Amborella trichopoda] gi|62287446|sp|Q70XX6|RR11_AMBTC
Chloroplast 30S ribosomal protein S11
Length = 138
Score = 241 bits (616), Expect = 2e-63
Identities = 117/138 (84%), Positives = 129/138 (92%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
M K IP+IGSR+NGRIGSRK+ R+IPKGVI+VQASFNNTIVTVTDVRGRV+SW SAG+CG
Sbjct: 1 MKKPIPRIGSRRNGRIGSRKNGRRIPKGVIHVQASFNNTIVTVTDVRGRVVSWCSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
F+GTRRGTPFAAQTAA NAIRTVVDQGMQRA V+IKGPGLGRDAALRAI RSG+LL F+R
Sbjct: 61 FRGTRRGTPFAAQTAATNAIRTVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGVLLSFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAB88760.1| ribosomal protein S11 [Spinacia oleracea]
gi|11497559|ref|NP_054967.1| ribosomal protein S11
[Spinacia oleracea] gi|19855077|sp|P06506|RR11_SPIOL
Chloroplast 30S ribosomal protein S11
Length = 138
Score = 241 bits (616), Expect = 2e-63
Identities = 118/138 (85%), Positives = 129/138 (92%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK IPKIGSR+NGRI SRK RKIPKGVI+VQASFNNTIVTVTDVRGRV+SW+SAG+CG
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
F+GT+RGTPFAAQTAA NAIRTVV+QGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAD28753.1| ribosomal protein S11' [Calycanthus floridus var. glaucus]
gi|32480875|ref|NP_862786.1| ribosomal protein S11
[Calycanthus floridus var. glaucus]
gi|62287459|sp|Q7YJU5|RR11_CALFE Chloroplast 30S
ribosomal protein S11
Length = 138
Score = 241 bits (614), Expect = 4e-63
Identities = 117/138 (84%), Positives = 129/138 (92%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
M KSIP+IGSR+ GRI SRK+ R+IPKGVI+VQASFNNTIVTVTDV GRV+SWSSAG+CG
Sbjct: 1 MTKSIPRIGSRRGGRIASRKNARRIPKGVIHVQASFNNTIVTVTDVTGRVVSWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
F+GTRRGTPFAAQTAAANAIRTV+DQGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FRGTRRGTPFAAQTAAANAIRTVIDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLSFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAA27213.1| unnamed protein product [Spinacia oleracea] gi|81525|pir||B23525
ribosomal protein S11 - spinach chloroplast
Length = 138
Score = 237 bits (605), Expect = 4e-62
Identities = 116/138 (84%), Positives = 128/138 (92%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK IPKIGSR+NGRI SRK RKIPKGVI+VQASFNNTIVTVTDVRGRV+SW+SAG+CG
Sbjct: 1 MAKPIPKIGSRRNGRISSRKSARKIPKGVIHVQASFNNTIVTVTDVRGRVVSWASAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
F+GT+RGTPFAAQTAA NAIRTVV+QGMQRA V+IKGP LGRDAALRAI RSGILL F+R
Sbjct: 61 FRGTKRGTPFAAQTAAGNAIRTVVEQGMQRAEVMIKGPSLGRDAALRAIRRSGILLSFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
+VTP+PHNGCR PKKRRV
Sbjct: 121 NVTPMPHNGCRPPKKRRV 138
>dbj|BAA84418.1| ribosomal protein S11 [Arabidopsis thaliana]
gi|7525066|ref|NP_051091.1| ribosomal protein S11
[Arabidopsis thaliana] gi|6685906|sp|P56802|RR11_ARATH
Chloroplast 30S ribosomal protein S11
Length = 138
Score = 234 bits (598), Expect = 3e-61
Identities = 118/138 (85%), Positives = 126/138 (90%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK I +IGSRKN R GSRK+ R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1 MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
F+GTRRGTPFAAQTAA NAIR VVDQGMQRA V IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAF28627.1| ribosomal protein S11 [Nymphaea alba] gi|50346816|ref|YP_053187.1|
ribosomal protein S11 [Nymphaea alba]
gi|62287433|sp|Q6EW19|RR11_NYMAL Chloroplast 30S
ribosomal protein S11
Length = 138
Score = 228 bits (580), Expect = 3e-59
Identities = 113/138 (81%), Positives = 122/138 (87%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
M K IPKIGSR+N RI SRK + P GVI+VQASFNNTIVTVTD +GRV+SWSSAG+CG
Sbjct: 1 MTKPIPKIGSRRNSRISSRKSGCRTPIGVIHVQASFNNTIVTVTDPQGRVVSWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGTPFAAQTAA NAIR VVDQGMQRA V+IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61 FKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGLGRDAALRAIRRSGILLNFVR 120
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138
>emb|CAB67192.1| ribosomal protein S11 [Oenothera elata subsp. hookeri]
gi|13518367|ref|NP_084726.1| ribosomal protein S11
[Oenothera elata subsp. hookeri]
gi|48474981|sp|Q9MTJ2|RR11_OENHO Chloroplast 30S
ribosomal protein S11
Length = 144
Score = 212 bits (540), Expect = 1e-54
Identities = 112/144 (77%), Positives = 119/144 (81%), Gaps = 6/144 (4%)
Query: 1 MAKSIPKIGSR------KNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWS 54
MAKSIP G R +N R SRK RKIPKGVI+VQASF+NTIVTVTDVRGRVISWS
Sbjct: 1 MAKSIPSAGLRLRLRLRRNARRRSRKSTRKIPKGVIHVQASFHNTIVTVTDVRGRVISWS 60
Query: 55 SAGSCGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGI 114
SAG+CGFK TR+GTPFAAQTAA +AIR VVDQGMQRA V IKGPGLGRDAALRAI RSGI
Sbjct: 61 SAGTCGFKSTRKGTPFAAQTAAGDAIRPVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGI 120
Query: 115 LLRFIRDVTPIPHNGCRAPKKRRV 138
L IRDVTP+PHNGC PKKRRV
Sbjct: 121 RLSCIRDVTPLPHNGCMPPKKRRV 144
>gb|AAA65859.1| ribosomal protein S11 [Epifagus virginiana]
gi|11466964|ref|NP_054385.1| ribosomal protein S11
[Epifagus virginiana] gi|7440322|pir||S78390 ribosomal
protein S11, plastid - beechdrops plastid
gi|266962|sp|P30059|RR11_EPIVI Plastid 30S ribosomal
protein S11
Length = 136
Score = 204 bits (520), Expect = 3e-52
Identities = 102/138 (73%), Positives = 116/138 (83%), Gaps = 2/138 (1%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK+IP GSR+N +GSRK +I KGVI+VQ SFNNTIV VTD++GRV+SWSSAG+CG
Sbjct: 1 MAKAIPITGSRRNVHVGSRKSSFRIQKGVIHVQTSFNNTIVAVTDIKGRVVSWSSAGTCG 60
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGTRRGT FAAQ AA NAIR V QGMQRA V+IKGPG+GRDA LRAI SG+LL F+R
Sbjct: 61 FKGTRRGTSFAAQIAATNAIRIV--QGMQRAEVMIKGPGIGRDAVLRAIRGSGVLLTFVR 118
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 119 DVTPMPHNGCRPPKKRRV 136
>ref|NP_042439.1| ribosomal protein S11 [Pinus thunbergii] gi|7440339|pir||T07518
ribosomal protein S11 - Japanese black pine chloroplast
gi|1173180|sp|P41630|RR11_PINTH Chloroplast 30S
ribosomal protein S11 gi|1262679|dbj|BAA04396.1|
ribosomal protein S11 [Pinus thunbergii]
Length = 130
Score = 198 bits (503), Expect = 3e-50
Identities = 94/124 (75%), Positives = 108/124 (86%)
Query: 15 RIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQT 74
RIGSR++ ++ KGVIYVQASFNNTIVT TDVRG+V+SWSSAG+CGFKGTRRGTPFAAQT
Sbjct: 7 RIGSRRNEHRVLKGVIYVQASFNNTIVTATDVRGQVLSWSSAGACGFKGTRRGTPFAAQT 66
Query: 75 AAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPK 134
AA N IR ++D+GM+R V+I GPG GRD ALR I RSGILL F+RDVTP+PHNGCR PK
Sbjct: 67 AAENVIRALMDRGMERVEVMISGPGRGRDTALRTIRRSGILLSFVRDVTPMPHNGCRPPK 126
Query: 135 KRRV 138
KRRV
Sbjct: 127 KRRV 130
>gb|AAO74068.1| ribosomal protein S11 [Pinus koraiensis]
gi|29565641|ref|NP_817220.1| ribosomal protein S11
[Pinus koraiensis] gi|62287471|sp|Q85WZ9|RR11_PINKO
Chloroplast 30S ribosomal protein S11
Length = 130
Score = 197 bits (502), Expect = 3e-50
Identities = 95/124 (76%), Positives = 108/124 (86%)
Query: 15 RIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTRRGTPFAAQT 74
RIGSR++ ++ KGVIYVQASFNNTIVT TDVRG+VISWSSAG+CGFKGTRRGTPFAAQT
Sbjct: 7 RIGSRRNEHRVLKGVIYVQASFNNTIVTATDVRGQVISWSSAGACGFKGTRRGTPFAAQT 66
Query: 75 AAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPK 134
AA N IRT++D+G+ R V+I GPG GRD ALR I RSGILL F+RDVTP+PHNGCR PK
Sbjct: 67 AAENVIRTLMDRGIGRVEVMISGPGRGRDTALRTIRRSGILLSFVRDVTPMPHNGCRPPK 126
Query: 135 KRRV 138
KRRV
Sbjct: 127 KRRV 130
>emb|CAA28118.1| rps11 [Marchantia polymorpha] gi|70940|pir||R3LV11 ribosomal
protein S11, chloroplast - liverwort (Marchantia
polymorpha) chloroplast gi|11466736|ref|NP_039332.1|
ribosomal protein S11 [Marchantia polymorpha]
gi|133725|sp|P06364|RR11_MARPO Chloroplast 30S ribosomal
protein S11
Length = 130
Score = 195 bits (495), Expect = 2e-49
Identities = 94/138 (68%), Positives = 114/138 (82%), Gaps = 8/138 (5%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
M KS+ KI RK R++PKGVI++QASFNNTIVTVTD+RG+V+SWSSAG+CG
Sbjct: 1 MPKSVKKINLRKG--------KRRLPKGVIHIQASFNNTIVTVTDIRGQVVSWSSAGACG 52
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGT++ TPFAAQTAA NAIR ++DQGM++A V+I GPG GRD ALRAI RSGI+L F+R
Sbjct: 53 FKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALRAIRRSGIILSFVR 112
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR P+KRRV
Sbjct: 113 DVTPMPHNGCRPPRKRRV 130
>ref|NP_777446.1| ribosomal protein S11 [Anthoceros formosae]
gi|27807907|dbj|BAC55382.1| ribosomal protein S11
[Anthoceros formosae] gi|29337190|sp|P59381|RR11_ANTFO
Chloroplast 30S ribosomal protein S11
Length = 130
Score = 195 bits (495), Expect = 2e-49
Identities = 95/138 (68%), Positives = 114/138 (81%), Gaps = 8/138 (5%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAKSI KI RK R+IP+GV ++QASFNNTI+TVTDVRG+V+SWSSAG+CG
Sbjct: 1 MAKSIRKINLRKG--------KRRIPRGVTHIQASFNNTIITVTDVRGQVVSWSSAGACG 52
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGT++ TPFAAQTAA NAIR ++DQGM++A V+I GPG GRD ALRAI RSG++L ++R
Sbjct: 53 FKGTKKSTPFAAQTAAENAIRILIDQGMKQAEVMISGPGPGRDTALRAIRRSGVVLSYVR 112
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTPIPHNGCR PKKRRV
Sbjct: 113 DVTPIPHNGCRPPKKRRV 130
>dbj|BAC85074.1| ribosomal protein S11 [Physcomitrella patens subsp. patens]
gi|34501437|ref|NP_904224.1| ribosomal protein S11
[Physcomitrella patens subsp. patens]
gi|62287444|sp|Q6YXJ8|RR11_PHYPA Chloroplast 30S
ribosomal protein S11
Length = 130
Score = 193 bits (490), Expect = 9e-49
Identities = 94/138 (68%), Positives = 112/138 (81%), Gaps = 8/138 (5%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK I KI RK R+IPKGVI++QASFNNTIVTVTD+RG+V+ WSSAG+CG
Sbjct: 1 MAKLIKKISLRKG--------KRRIPKGVIHIQASFNNTIVTVTDIRGQVVFWSSAGACG 52
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKG ++ TPFAAQTAA NAIR ++DQGM++A V+I GPG GRD ALRAI RSG++L F+R
Sbjct: 53 FKGAKKSTPFAAQTAAENAIRVLIDQGMKQAEVMISGPGPGRDTALRAIRRSGVILNFVR 112
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTP+PHNGCR PKKRRV
Sbjct: 113 DVTPMPHNGCRPPKKRRV 130
>gb|AAF43802.1| ribosomal protein S11 [Mesostigma viride]
gi|11466358|ref|NP_038361.1| ribosomal protein S11
[Mesostigma viride] gi|14285755|sp|Q9MUU9|RR11_MESVI
Chloroplast 30S ribosomal protein S11
Length = 130
Score = 191 bits (486), Expect = 2e-48
Identities = 93/138 (67%), Positives = 112/138 (80%), Gaps = 8/138 (5%)
Query: 1 MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
MAK I KIG RK RKIPKGV++VQA+FNNTIVT+TDVRG V+SWSSAG+CG
Sbjct: 1 MAKQIRKIGVRKT--------KRKIPKGVVHVQATFNNTIVTITDVRGEVLSWSSAGACG 52
Query: 61 FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
FKGT++GTPFAAQTAA NA+R V+DQGM++A ++I GPG GR+ A+RAI +G+ + IR
Sbjct: 53 FKGTKKGTPFAAQTAAENAVRQVIDQGMKQAEIMISGPGSGRETAIRAIQAAGLGITLIR 112
Query: 121 DVTPIPHNGCRAPKKRRV 138
DVTPIPHNGCR PKKRRV
Sbjct: 113 DVTPIPHNGCRPPKKRRV 130
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.323 0.138 0.406
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 223,937,866
Number of Sequences: 2540612
Number of extensions: 8124530
Number of successful extensions: 18431
Number of sequences better than 10.0: 535
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 69
Number of HSP's that attempted gapping in prelim test: 17731
Number of HSP's gapped (non-prelim): 540
length of query: 138
length of database: 863,360,394
effective HSP length: 114
effective length of query: 24
effective length of database: 573,730,626
effective search space: 13769535024
effective search space used: 13769535024
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 67 (30.4 bits)
Medicago: description of AC139709.6