BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139344.2 - phase: 0 
         (1591 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]                976  0.0
gb|AAO73521.1| gag-pol polyprotein [Glycine max]                      969  0.0
gb|AAO73523.1| gag-pol polyprotein [Glycine max]                      969  0.0
gb|AAO73527.1| gag-pol polyprotein [Glycine max]                      966  0.0
gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]             965  0.0
gb|AAO73529.1| gag-pol polyprotein [Glycine max]                      955  0.0
gb|AAO73525.1| gag-pol polyprotein [Glycine max]                      943  0.0
gb|AAC64917.1| gag-pol polyprotein [Glycine max]                      939  0.0
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   921  0.0
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult...   903  0.0
gb|AAD20307.1| copia-type pol polyprotein [Zea mays]                  881  0.0
gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein...   880  0.0
ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (jap...   867  0.0
ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica...   863  0.0
gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza s...   863  0.0
ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultiva...   862  0.0
gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]                847  0.0
gb|AAL35396.1| Opie2a pol [Zea mays]                                  841  0.0
emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar...   813  0.0
gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cult...   791  0.0

>gb|AAN40030.1| putative gag-pol polyprotein [Zea mays]
          Length = 2319

 Score =  976 bits (2522), Expect = 0.0
 Identities = 611/1629 (37%), Positives = 886/1629 (53%), Gaps = 151/1629 (9%)

Query: 44   WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
            W   M S ++G+   LW+I+  G+      EE         TP   +   ++ +   II 
Sbjct: 138  WADKMKSHLIGVHPSLWEIVNVGMYKPAQGEE--------MTPEMMQEVHRNAQAVSIIK 189

Query: 104  ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEM 163
             S+   EY K+  +  A+ ++  L  + EG    K  +   L  +   +     ES++ +
Sbjct: 190  GSLCPEEYRKVQGREDARDIWNILRMSHEGDPKAKRHRVEALESELARYDWTKGESLQSL 249

Query: 164  YSRFQTLVSGLQILKKSYVASDHVSKI-LRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSS 222
            + R   LV+ +++L     +   V+++ +R+   + +     I +  D   ++   L + 
Sbjct: 250  FDRLMVLVNKIRVLGSEDWSDSKVTRLFMRAYKEKDKSLARMIRDRDDYEDMTPHQLFAK 309

Query: 223  LKVHEMSLNEHETSKKSKSIALPSKGKTS-KSSKAYKASESEEESPDGDSDEDQSVKMAM 281
            ++ HE   +E    K   S AL +  + + K SK +KA +  E S D DS  D+   M +
Sbjct: 310  IQQHE---SEEAPIKTRDSHALITNEQDNLKKSKDHKAKKVVETSSDEDSSSDEDTAMFI 366

Query: 282  LSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSKK 341
                     +  KKF+ K   ++  +K  ++ C+ C + GHFIADCP+ ++++ K + KK
Sbjct: 367  ---------KTFKKFVRKNDKFQ--RKGKKRACYECGQTGHFIADCPNKKEQEAKKEYKK 415

Query: 342  SSFNSS-------KFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMGLVATVSSEAV 394
              F          K +K  +  +   W   D  S S++EE          +VA V+ ++ 
Sbjct: 416  DKFKKGGKTKGYFKKKKYGQAHIGEEWNSDDESSSSEEEE----------VVANVAIQST 465

Query: 395  SEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKSTLLE 454
            S A+  +  +++ Y  IP   +    K  ++LF +      D      D     K+ +++
Sbjct: 466  SSAQLFTNLQDDSY--IPTCLMAKGDK--VTLFSN------DFSNDDDDDQIAMKNKMIK 515

Query: 455  LKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNKHEIALDDFIMAGIDRS-KVA 513
                E  L G+N+I+            KL EK DK        A +D ++   +R+ ++ 
Sbjct: 516  ----EFGLNGYNVIT------------KLMEKLDKRKATLD--AQEDLLILEKERNLELQ 557

Query: 514  SMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVP-----------EGTNAV 562
             +I++      K I     K+   +L +  + ++  + S  V            +  NA 
Sbjct: 558  ELIHN------KDIEVINLKTSIDNLANEKNALESSMLSLNVQNQELQVQLENCKNINAP 611

Query: 563  TVV-QSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKI------------LKRSEPV 609
            T+V +SK  ++ +  K  +K  +    +   +   S ++K+            LK+ EP 
Sbjct: 612  TLVFESKSSSNDNSCKHCAK-YHASCCLTNHARKHSPQVKVEEILKRCSSNDGLKKVEPK 670

Query: 610  HQNLIKPESK---IPKQKDQKNKAATASEKTIPKGVKPKVLNDQ--KPLSIHPKVCLRAR 664
            +++L KP +    +     ++N +        PK ++   L D   +  S + K      
Sbjct: 671  YKSL-KPNNGRRGLGFNSSKENPSTVHKGWRSPKFIEGTTLYDALGRIHSSNDKSSQVYS 729

Query: 665  EKQRSWYLDSGCSRHMTGEKALFLTLTM-KDGGEVKFGGNQTGKIIGTGTIGNSSI-SIN 722
                SW LDSGC+ HMTGEK +F TL + ++  E+ FG +   K+IG G I  S   S++
Sbjct: 730  SGGSSWVLDSGCTNHMTGEKDMFHTLQLTQEAQEIVFGDSGKSKVIGIGKIPISDQQSLS 789

Query: 723  NVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDL 782
            NV LVD L +NLLS+SQ C   Y+  FS  +  ++ ++D S+ F G+    +Y ++F+  
Sbjct: 790  NVLLVDSLSYNLLSVSQLCGMGYNCLFSDVDVKILRREDSSVAFTGRLKGKLYLVDFTTS 849

Query: 783  ADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGK 842
                  CL++ +DK W+WH+RL H   R ++K+ K   + GL N+ +  D +CGACQ GK
Sbjct: 850  KVTPETCLVAKSDKGWLWHRRLAHVGMRNLAKLQKDNHIIGLTNVVFEKDRVCGACQAGK 909

Query: 843  IVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 902
                  +SK++V+T RPLELLH+DLFGPV   S+ GSKYGLVIVDD+SR+TWV F+  K 
Sbjct: 910  QHGVPHQSKNVVTTKRPLELLHMDLFGPVAYISIGGSKYGLVIVDDFSRFTWVFFLSDKG 969

Query: 903  YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 962
               E+   F  + Q+E ELKI KVRSD+G EF+N   E F  + GI HEFS P TPQQNG
Sbjct: 970  ETQEILKKFMRRAQNEFELKIKKVRSDNGTEFKNTGVEEFLGEEGIKHEFSVPYTPQQNG 1029

Query: 963  VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRP 1022
            VVERKNRTL E ARTM+ E     +FWAEAVNT+C+  NR+Y+  + +KTAYEL  G +P
Sbjct: 1030 VVERKNRTLIEAARTMLDEYKTPDNFWAEAVNTACHAINRLYLHKIYKKTAYELLTGNKP 1089

Query: 1023 NISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVK 1082
             + YF  FGC C+ILN K    KF  +   G  LGY+  +  YRV+N+ T  VE ++ V 
Sbjct: 1090 KVDYFRVFGCKCFILNKKVKSSKFAPRVDEGFLLGYASNAHGYRVFNNSTGLVEIAIDVT 1149

Query: 1083 FDDREP-------------------------GSKTSEQSESNAGT-------------TD 1104
            FD+                            G    ++ +   GT               
Sbjct: 1150 FDESNGSQGHVSNDTVGNEKLPCESIKKLAIGEVRPQERDDEEGTLWMTNEVVDVGARVV 1209

Query: 1105 SEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNESASEDFQDNTQQVI 1164
            S++ S    PS S      E+        E E  +     P+ Q  +  E  Q +   V 
Sbjct: 1210 SDNVSTQANPSTSSHPNHEENHQRMPTVVEDEQENIDGEVPLDQVTNEEEQIQRH-PSVP 1268

Query: 1165 QPKFKH--KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWIL 1222
             P+  H  +  HP + I+GS      TRS           +S +EP  VEEAL D  WI 
Sbjct: 1269 HPRVHHTIQRDHPVDNILGSIRRGVTTRSRLANFCEFYSFVSSLEPLKVEEALDDPDWIT 1328

Query: 1223 AMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1282
            AMQEELN F RN+VW LV +P ++N+I TKWVFRNK +E G VT+NKARLVAQGY+Q EG
Sbjct: 1329 AMQEELNNFTRNEVWSLVQRP-KQNVIGTKWVFRNKQDENGVVTKNKARLVAQGYTQVEG 1387

Query: 1283 INYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLK 1342
            +++ ET+APVARLE+IR+L++YA NH   LYQMDVKS FLNG ++E VYV+QPPGFED K
Sbjct: 1388 LDFGETYAPVARLESIRILIAYATNHDFKLYQMDVKSAFLNGPLQERVYVEQPPGFEDPK 1447

Query: 1343 HPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYV 1402
             P+HVY L K+LYGLKQAPRAWYD L +FLIKN F  G+ D+TLF R +  ++ + QIYV
Sbjct: 1448 KPNHVYLLHKALYGLKQAPRAWYDCLKDFLIKNGFTIGKADSTLFTRKVDNELFVCQIYV 1507

Query: 1403 DDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLK 1462
            DDIIFGSTN   C+EFSK+M + FEMSMMGELK+FLG Q+ Q KEG ++ QTKYT+++LK
Sbjct: 1508 DDIIFGSTNEKFCEEFSKVMTNRFEMSMMGELKYFLGFQVKQLKEGTFLCQTKYTQDMLK 1567

Query: 1463 KFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCAR 1522
            KF +E  K   TPM     L   + G  VDQKLYR MIGSLLYL ASRPDI+ SVC+CAR
Sbjct: 1568 KFGMEKAKHAKTPMPSNGHLDLNEEGKPVDQKLYRSMIGSLLYLCASRPDIMLSVCMCAR 1627

Query: 1523 FQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNC 1582
            FQ++P++ HL AVKRI RYL  T NLGL Y K   + L+G+ D+DYAG +++RKST+G C
Sbjct: 1628 FQANPKDCHLVAVKRILRYLVHTQNLGLWYPKGSFFDLLGYSDSDYAGCKVDRKSTTGTC 1687

Query: 1583 QFLGENLIS 1591
            QFLG +L+S
Sbjct: 1688 QFLGRSLVS 1696


>gb|AAO73521.1| gag-pol polyprotein [Glycine max]
          Length = 1574

 Score =  969 bits (2506), Expect = 0.0
 Identities = 597/1583 (37%), Positives = 856/1583 (53%), Gaps = 178/1583 (11%)

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   D        T  + +L
Sbjct: 17   DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK  +  L    EG+  VK ++  +L  ++E 
Sbjct: 77   ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKISRLQLLATKFEN 136

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 137  LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D ++
Sbjct: 197  CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLNT 243

Query: 272  DEDQSVKMAMLSNKLEYLARKQKK----------FLSKRGSYKNSKKEDQKG-------C 314
            DE  +  + +L  +   +  +  K          F  ++GS K  KK D K        C
Sbjct: 244  DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKKSDVKPSHSKGIQC 302

Query: 315  FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH IA+CP   K+  KG S   S                   D +SE  SD   
Sbjct: 303  HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 340

Query: 375  ADDDAKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A  G+  T            +ED ++  S+I   EL  S ++L    E    + 
Sbjct: 341  SDRDVNALTGIFET------------AEDSSDTDSEITFDELATSYRKLCIKSEKILQQE 388

Query: 435  TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
              LK+   DL  ++++   E+     ELKG    +++  E+  KS+     +  +KGS  
Sbjct: 389  AQLKKVIADLEAEKEAHKEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSDT 439

Query: 494  KHEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
                 LD+ ++ G              KN G  +G+G++ + +   ++            
Sbjct: 440  -----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTM------------ 468

Query: 552  STFVP-EGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
            + FVP +     T+ Q +    G Q K              KS  K  +     +     
Sbjct: 469  TEFVPAKNRTGATMSQHRSRHHGMQQK--------------KSKRKKWRCHYCGK----- 509

Query: 611  QNLIKPES-KIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRS 669
               IKP    +      ++  +      +PK          K +S+     LRA  K+  
Sbjct: 510  YGHIKPFCYHLHPHHGTQSSNSRKKMMWVPK---------HKAVSLVVHTSLRASAKE-D 559

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVD 728
            WYLDSGCSRHMTG K   L +       V FG    GKIIG G + +  + S+N V LV 
Sbjct: 560  WYLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVK 619

Query: 729  GLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVV 788
            GL  NL+SISQ CD  ++V F+K+ C LV  +   +  KG R ++   +           
Sbjct: 620  GLTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSST 678

Query: 789  CLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSF 848
            CL S  D+  +WH+R GH + R + KI     V+G+PN+      +CG CQ GK VK S 
Sbjct: 679  CLSSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSH 738

Query: 849  KSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVF 908
            +     +TSR LELLH+DL GP+   SL G +Y  V+VDD+SR+TWVKFI+ K    EVF
Sbjct: 739  QKLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVKFIREKSETFEVF 798

Query: 909  SSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKN 968
                 ++Q EK+  I ++RSDHG EFEN     FC   GI HEFS+  TPQQNG+VERKN
Sbjct: 799  KELSLRLQREKDCVIKRIRSDHGREFENSRLTEFCTSEGITHEFSAAITPQQNGIVERKN 858

Query: 969  RTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFH 1028
            RTLQE AR M+H   L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P++ +FH
Sbjct: 859  RTLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFH 918

Query: 1029 QFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREP 1088
             FG  CYIL  ++  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P
Sbjct: 919  IFGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSP 978

Query: 1089 GSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQ 1148
              K   + +      +  DA++S + +++                   S+S  + S I Q
Sbjct: 979  ARKKDVEEDVRTSGDNVADAAKSGENAEN-------------------SDSATDESNINQ 1019

Query: 1149 NESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEP 1208
             +  S               + +  HP+ELIIG  +    TRS   +  S    +S IEP
Sbjct: 1020 PDKRSST-------------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEP 1066

Query: 1209 KTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRN 1268
            K V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRN
Sbjct: 1067 KNVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRN 1126

Query: 1269 KARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEE 1328
            KARLVAQGY+Q EG+++ ETFAPVARLE+IRLLL  A      LYQMDVKS FLNG + E
Sbjct: 1127 KARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNE 1186

Query: 1329 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1388
            EVYV+QP GF D  HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF 
Sbjct: 1187 EVYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFV 1246

Query: 1389 RTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG 1448
            +   ++++I QIYVDDI+FG  +  + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ 
Sbjct: 1247 KQDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDS 1306

Query: 1449 VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTA 1508
            +++ Q++Y K ++KKF +E+     TP      LSK++ GT VDQ LYR MIGSLLYLTA
Sbjct: 1307 IFLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTA 1366

Query: 1509 SRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADY 1568
            SRPDI ++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y    +  L+G+CDAD+
Sbjct: 1367 SRPDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADW 1426

Query: 1569 AGDRIERKSTSGNCQFLGENLIS 1591
            AG   +RKSTSG C +LG NLIS
Sbjct: 1427 AGSADDRKSTSGGCFYLGNNLIS 1449


>gb|AAO73523.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  969 bits (2505), Expect = 0.0
 Identities = 596/1582 (37%), Positives = 855/1582 (53%), Gaps = 174/1582 (10%)

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   D        T  + +L
Sbjct: 17   DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK     L +  EG+  VK ++  +L  ++E 
Sbjct: 77   ALGNSKALNALFNGVDKNIFRLINTCTVAKDACEILKSTHEGTSKVKMSRLQLLATKFEN 136

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 137  LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D D+
Sbjct: 197  CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 243

Query: 272  DEDQSVKMAMLSNKLEYLARKQKK----------FLSKRGSYKNSKKEDQKG-------C 314
            DE  +  + +L  +   +  +  K          F  ++GS K  K+ D K        C
Sbjct: 244  DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKRSDVKPSHSKGIQC 302

Query: 315  FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH IA+CP   K+  KG S   S                   D +SE  SD   
Sbjct: 303  HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 340

Query: 375  ADDDAKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A +G+  T            +ED ++  S+I   EL  S ++L    E    + 
Sbjct: 341  SDRDVNALIGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQE 388

Query: 435  TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
              LK+   DL  ++++   E+     ELKG    +++  E+  KS+     +  +KGS  
Sbjct: 389  AQLKKVIADLEAEKEAHKEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSDT 439

Query: 494  KHEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
                 LD+ ++ G              KN G  +G+G++ + +   ++            
Sbjct: 440  -----LDEVLLLG--------------KNAGNQRGLGFNPKSAGRTTM------------ 468

Query: 552  STFVP-EGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
            + FVP +     T+ Q +    G Q K              KS  K  +     +     
Sbjct: 469  TEFVPAKNRTGATMSQHRSRHHGMQQK--------------KSKRKKWRCHYCGK----- 509

Query: 611  QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSW 670
               IKP              ++ S K +    K K ++    L +H  +   A+E    W
Sbjct: 510  YGHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVS----LVVHTSLRASAKE---DW 562

Query: 671  YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDG 729
            YLDSGCSRHMTG K   L +       V FG    GKIIG G + +  + S+N V LV G
Sbjct: 563  YLDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKG 622

Query: 730  LKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVC 789
            L  NL+SISQ CD  ++V F+K+ C LV  +   +  KG R ++   +           C
Sbjct: 623  LTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTC 681

Query: 790  LLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFK 849
            L S  D+  +WH+R GH + R + KI     V+G+PN+      +CG CQ GK VK S +
Sbjct: 682  LSSKEDEVRIWHQRFGHLHLRGMKKILDKSAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 741

Query: 850  SKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS 909
                 +TSR LELLH+DL GP+   SL G +Y  V+VDD+SR+TWV FI+ K    EVF 
Sbjct: 742  KLQHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSGTFEVFK 801

Query: 910  SFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 969
                ++Q EK+  I ++RSDHG EFEN  F  FC   GI HEFS+  TPQQNG+VERKNR
Sbjct: 802  KLSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNR 861

Query: 970  TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQ 1029
            TLQE AR M+H   L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P++ +FH 
Sbjct: 862  TLQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHI 921

Query: 1030 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPG 1089
            FG  CYIL  ++  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P 
Sbjct: 922  FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPA 981

Query: 1090 SKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQN 1149
             K   + +      +  DA++S + +++                   S+S  + S I Q 
Sbjct: 982  RKKDVEEDVRTSGDNVADAAKSGENAEN-------------------SDSATDESNINQP 1022

Query: 1150 ESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPK 1209
            +  S               + +  HP+ELIIG  +    TRS   +  S    +S IEPK
Sbjct: 1023 DKRSST-------------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPK 1069

Query: 1210 TVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNK 1269
             V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRNK
Sbjct: 1070 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 1129

Query: 1270 ARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEE 1329
            ARLVAQGY+Q EG+++ ETFAPVARLE+IRLLL  A      LYQMDVKS FLNG + EE
Sbjct: 1130 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 1189

Query: 1330 VYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRR 1389
            VYV+QP GF D  HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF +
Sbjct: 1190 VYVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 1249

Query: 1390 TLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGV 1449
               ++++I QIYVDDI+FG  +  + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +
Sbjct: 1250 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSI 1309

Query: 1450 YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1509
            ++ Q++Y K ++KKF +E+     TP      LSK++ GT VDQK YR MIGSLLYLTAS
Sbjct: 1310 FLSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQKPYRSMIGSLLYLTAS 1369

Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYA 1569
            RPDI ++V +CAR+Q++P+ SHL  VKRI +Y+ GT++ G++Y       L+G+CDAD+A
Sbjct: 1370 RPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSSSMLVGYCDADWA 1429

Query: 1570 GDRIERKSTSGNCQFLGENLIS 1591
            G   +RKSTSG C +LG NLIS
Sbjct: 1430 GSADDRKSTSGGCFYLGNNLIS 1451


>gb|AAO73527.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  966 bits (2497), Expect = 0.0
 Identities = 594/1581 (37%), Positives = 850/1581 (53%), Gaps = 172/1581 (10%)

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   D        T  + +L
Sbjct: 17   DGSNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTDELKPEEDWTKEEDEL 76

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK  +  L    EG+  VK ++  +L  ++E 
Sbjct: 77   ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKITHEGTSKVKMSRLQLLATKFEN 136

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 137  LKMKEEECIHDFHMNILEIANACTALGERITDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D D+
Sbjct: 197  CNMRVDELIGSLQTFELGLSDR-AEKKSKNLAFVSN------------DEGEEDEYDLDT 243

Query: 272  DEDQSVKMAMLSNKLEYLARKQKK----------FLSKRGSYKNSKKEDQKG-------C 314
            DE  +  + +L  +   +  +  K          F  ++GS K  K+ D K        C
Sbjct: 244  DEGLTNAVVLLGKQFNKVLNRMDKRQKPHVQNIPFDIRKGS-KYQKRSDVKPSHSKGIQC 302

Query: 315  FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH IA+CP   K+  KG S   S                   D +SE  SD   
Sbjct: 303  HGCEGYGHIIAECPTHLKKHRKGLSVCQS-------------------DTESEQESD--- 340

Query: 375  ADDDAKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A  G+  T            +ED ++  S+I   EL  S ++L    E    + 
Sbjct: 341  SDRDVNALTGIFET------------AEDSSDTDSEITFDELAASYRKLCIKSEKILQQE 388

Query: 435  TDLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNK 494
              LK+   DL  ++++   E+   + E+   N    T +  +K L             NK
Sbjct: 389  AQLKKVIADLEAEKEAHEEEISELKGEVGFLNSKLETMKKSIKML-------------NK 435

Query: 495  HEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
                LD+ ++ G              KN G  +G+G++ + +   ++            +
Sbjct: 436  GSDTLDEVLLLG--------------KNAGNQRGLGFNPKFAGRTTM------------T 469

Query: 553  TFVP-EGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQ 611
             FVP +     T+ Q      G+Q K              KS  K  +     +      
Sbjct: 470  EFVPAKNRTGTTMSQHLSRHHGTQQK--------------KSKRKKWRCHYCGK-----Y 510

Query: 612  NLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWY 671
              IKP              ++ S K +    K K ++    L +H  +   A+E    WY
Sbjct: 511  GHIKPFCYHLHGHPHHGTQSSNSRKKMMWVPKHKAVS----LVVHTSLRASAKE---DWY 563

Query: 672  LDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGL 730
            LDSGCSRHMTG K   L +       V FG    GKIIG G + +  + S+N V LV GL
Sbjct: 564  LDSGCSRHMTGVKEFLLNIEPCSTSYVTFGDGSKGKIIGMGKLVHDGLPSLNKVLLVKGL 623

Query: 731  KHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCL 790
              NL+SISQ CD  ++V F+K+ C LV  +   +  KG R ++   +           CL
Sbjct: 624  TANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCL 682

Query: 791  LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS 850
             S  D+  +WH+R GH + R + KI     V+G+PN+      +CG CQ GK VK S + 
Sbjct: 683  SSKEDEVRIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQK 742

Query: 851  KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 910
                +TSR LELLH+DL GP+   SL G +Y  V+VDD+SR+TWV FI+ K    EVF  
Sbjct: 743  LRHQTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSETFEVFKE 802

Query: 911  FCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRT 970
               ++Q EK+  I ++RSDHG EFEN  F  FC   GI HEFS+  TPQQNG+VERKNRT
Sbjct: 803  LSLRLQREKDCVIKRIRSDHGREFENSRFTEFCTSEGITHEFSAAITPQQNGIVERKNRT 862

Query: 971  LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1030
            LQE AR M+H   L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P++ +FH F
Sbjct: 863  LQEAARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPSVKHFHIF 922

Query: 1031 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS 1090
            G  CYIL  ++  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P  
Sbjct: 923  GSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLSPAR 982

Query: 1091 KTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNE 1150
            K   + +      +  DA++S + +++                   S+S  + S I Q +
Sbjct: 983  KKDVEEDVRTLGDNVADAAKSGENAEN-------------------SDSATDESNINQPD 1023

Query: 1151 SASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKT 1210
              S               + +  HP+ELIIG  +    TRS   +  S    +S IEPK 
Sbjct: 1024 KRSST-------------RIQKMHPKELIIGDPNRGVTTRSREVEIVSNSCFVSKIEPKN 1070

Query: 1211 VEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKA 1270
            V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRNKA
Sbjct: 1071 VKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKA 1130

Query: 1271 RLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEV 1330
            RLVAQGY+Q EG+++ ETFAPVARLE+IRLLL  A      LYQMDVKS FLNG + EEV
Sbjct: 1131 RLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEV 1190

Query: 1331 YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRT 1390
            YV+QP GF D  HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF + 
Sbjct: 1191 YVEQPKGFADPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQ 1250

Query: 1391 LKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVY 1450
              ++++I QIYVDDI+FG  +  + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ ++
Sbjct: 1251 DAENLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIF 1310

Query: 1451 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1510
            + Q++Y K ++KKF +E+     TP      LSK++ GT VDQ LYR MIGSLLYLTASR
Sbjct: 1311 LSQSRYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASR 1370

Query: 1511 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAG 1570
            PDI ++V +CAR+Q++P+ SHLT VKRI +Y+ GT++ G++Y    +  L+G+CDAD+AG
Sbjct: 1371 PDITYAVGVCARYQANPKISHLTQVKRILKYVNGTSDYGIMYCHCSNPMLVGYCDADWAG 1430

Query: 1571 DRIERKSTSGNCQFLGENLIS 1591
               +RKSTSG C +LG NLIS
Sbjct: 1431 SADDRKSTSGGCFYLGNNLIS 1451


>gb|AAG52949.1| gag/pol polyprotein [Arabidopsis thaliana]
          Length = 1643

 Score =  965 bits (2494), Expect = 0.0
 Identities = 588/1589 (37%), Positives = 856/1589 (53%), Gaps = 127/1589 (7%)

Query: 41   FSWWKTNMYSFIMGLDEELWDIL-----------EDGVDDLDLDEEGAAIDRRIHTPAQK 89
            +  WK  M + I GL +E W              E+G D L  +++         T A++
Sbjct: 21   YGHWKVKMRALIRGLGKEAWIATSVGWKAPVVKGENGEDVLKTEDQW--------TDAEE 72

Query: 90   KLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQY 149
                 + +   +I  S+ + ++ ++ +  +AK  +  L   +EG+ +VK ++  ML  Q+
Sbjct: 73   AKATANSRALSLIFNSVNQNQFKRIQNCESAKEAWDKLAKAYEGTSSVKRSRIDMLASQF 132

Query: 150  ELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAK 209
            E   M + E+IEE   +   + S    L K Y     V K+LR LPSR+  K TA+  + 
Sbjct: 133  ENLTMDESENIEEFSGKISAIASEAHNLGKKYKDKKLVKKLLRCLPSRFESKRTAMGTSL 192

Query: 210  DLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEE--ESP 267
            D +T+  E++V  L+ +E+ +                KG  SK      +SE  E  E  
Sbjct: 193  DTDTIDFEEVVGMLQAYELEITS-------------GKGGYSKGVALAVSSEKNEIQELK 239

Query: 268  DGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADC 327
            D  S   ++   AM   +    AR Q     +      + K  +  C  C+  GH  A+C
Sbjct: 240  DSMSMMAKNFSRAMKRVEKRGFARNQGSDRDRDRDRDRNSKRSEIQCHECQGYGHIKAEC 299

Query: 328  PDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMGLVA 387
            P L+++  K  S+      +KF     KS        +S+S SD E++++D K  +  V 
Sbjct: 300  PSLKRKDLKC-SECRGIGHTKFDCIGSKSKPDRSYIAESDSDSDDEDSEEDVKGFVSFVG 358

Query: 388  TVSSEAVSEAESDSE---DENEVYSKIPRQELVDSLKELLSLFEH---RTNELTDLKEKY 441
             +  + VS   SDSE   ++ E+ +       +D   E   L+E+    + E     E+ 
Sbjct: 359  IIEDDNVSSDSSDSEVGCEKEEISADDESDVEMDVDGEFRKLYENWLVLSKEKVIWLEEK 418

Query: 442  VDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDK-GSGNKHEIALD 500
            V + +Q +    EL  + +      L  +  E++ + L Q L +   K    NK    LD
Sbjct: 419  VKVQEQIEQLKGELAVANQIKSEMILKYSAKEEKNRELSQDLSDTRKKIHMLNKGTKDLD 478

Query: 501  DFIMAGIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVPEGTN 560
              + AG    +V    +        G+GY    S                K+ FV     
Sbjct: 479  SILAAG----RVGKSNF--------GLGYHGGGSST--------------KTNFVRSKAA 512

Query: 561  AVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPESKI 620
            A T  QS   +  +      K +N      ++      +     R   + +   +  +++
Sbjct: 513  APTQSQSVFRSKSNSVPARRKYQNQN-HYHSQRTVTGYECYYCGRHGHIQRYCYRYAARL 571

Query: 621  PKQKDQKNKAATASEKTIP-KGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRH 679
             K K Q         K  P +G   K+   ++ L  H      A   ++ WY DSG SRH
Sbjct: 572  SKLKRQG--------KLYPHQGRNSKMYVRREDLYCHVAYTSIAEGVKKPWYFDSGASRH 623

Query: 680  MTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSIS-INNVWLVDGLKHNLLSIS 738
            MTG +A     +      V FGG   G+I G G +  +    + NV+ V+GL  NL+S+S
Sbjct: 624  MTGSQANLNNYSSVKESNVMFGGGAKGRIKGKGDLTETEKPHLTNVYFVEGLTANLISVS 683

Query: 739  QFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKW 798
            Q CD    V+F+K  C   N+ +++     +   N Y      + ++  +CL +  +   
Sbjct: 684  QLCDEGLTVSFNKVKCWATNERNQNTLTGVRTGNNCY------MWEEPKICLRAEKEDPV 737

Query: 799  VWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSR 858
            +WH+RLGH N R +SK+   ++V+G+P + +    +CGAC +GK ++   K  + + T++
Sbjct: 738  LWHQRLGHMNARSMSKLVNKEMVRGVPELKHIEKIVCGACNQGKQIRVQHKRVEGIQTTQ 797

Query: 859  PLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSE 918
             L+L+H+DL GP+ T S+ G +Y  V+VDD+SR+ WV+FI+ K      F     Q+++E
Sbjct: 798  VLDLIHMDLMGPMQTESIAGKRYVFVLVDDFSRYAWVRFIREKSETANSFKILALQLKNE 857

Query: 919  KELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTM 978
            K++ I ++RSD GGEF NE F  FCE  GI H++S+PRTPQ NGVVERKNRTLQEMAR M
Sbjct: 858  KKMGIKQIRSDRGGEFMNEAFNSFCESQGIFHQYSAPRTPQSNGVVERKNRTLQEMARAM 917

Query: 979  IHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILN 1038
            IH N + + FWAEA++T+CY+ NR+Y+R   +KT YE++KG++PN+SYF  FGC CYI+N
Sbjct: 918  IHGNGVPEKFWAEAISTACYVINRVYVRLGSDKTPYEIWKGKKPNLSYFRVFGCVCYIMN 977

Query: 1039 TKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDD------------- 1085
             KD L KFD++++ G FLGY+  S AYRV+N +   +EESM+V FDD             
Sbjct: 978  DKDQLGKFDSRSEEGFFLGYATNSLAYRVWNKQRGKIEESMNVVFDDGSMPELQIIVRNR 1037

Query: 1086 REPGSKTSEQ--SESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAES 1143
             EP +  S     E N    D+ D ++S + SD E              P A+ + +  S
Sbjct: 1038 NEPQTSISNNHGEERNDNQFDNGDINKSGEESDEE-------------VPPAQVHRDHAS 1084

Query: 1144 SPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG-L 1202
              I+ + S     +   Q   Q             + G K   R   S    EE +    
Sbjct: 1085 KDIIGDPSGERVTRGVKQDYRQ-------------LAGIKQKHRVMASFACFEEIMFSCF 1131

Query: 1203 LSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQ 1262
            +SI+EPK V+EAL D  WILAM+EEL +F R+ VWDLVP+P Q N+I TKW+F+NK +E 
Sbjct: 1132 VSIVEPKNVKEALEDHFWILAMEEELEEFSRHQVWDLVPRPPQVNVIGTKWIFKNKFDEV 1191

Query: 1263 GEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFL 1322
            G +TRNKARLVAQGY+Q EG+++ ETFAPVARLE IR LL  A   G  L+QMDVK  FL
Sbjct: 1192 GNITRNKARLVAQGYTQVEGLDFDETFAPVARLECIRFLLGTACGMGFKLHQMDVKCAFL 1251

Query: 1323 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQV 1382
            NG+IEEEVYV+QP GFE+L+ P++VYKLKK+LYGLKQAPRAWY+RL+ FLI   + RG V
Sbjct: 1252 NGIIEEEVYVEQPKGFENLEFPEYVYKLKKALYGLKQAPRAWYERLTTFLIVQGYTRGSV 1311

Query: 1383 DTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQI 1442
            D TLF +     I+I+QIYVDDI+FG T+  L K F K M  EF MSM+GELK+FLG+QI
Sbjct: 1312 DKTLFVKNDVHGIIIIQIYVDDIVFGGTSDKLVKTFVKTMTTEFRMSMVGELKYFLGLQI 1371

Query: 1443 NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGS 1502
            NQ+ EG+ + Q+ Y + L+K+F +   K   TPM  T  L K++ G  VD+KLYRGMIGS
Sbjct: 1372 NQTDEGITISQSTYAQNLVKRFGMCSSKPAPTPMSTTTKLFKDEKGVKVDEKLYRGMIGS 1431

Query: 1503 LLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIG 1562
            LLYLTA+RPD+  SV LCAR+QS+P+ SHL AVKRI +Y+ GT N GL Y +     L+G
Sbjct: 1432 LLYLTATRPDLCLSVGLCARYQSNPKASHLLAVKRIIKYVSGTINYGLNYTRDTSLVLVG 1491

Query: 1563 FCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            +CDAD+ G+  +R+ST+G   FLG NLIS
Sbjct: 1492 YCDADWGGNLDDRRSTTGGVFFLGSNLIS 1520


>gb|AAO73529.1| gag-pol polyprotein [Glycine max]
          Length = 1577

 Score =  955 bits (2469), Expect = 0.0
 Identities = 589/1578 (37%), Positives = 855/1578 (53%), Gaps = 165/1578 (10%)

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   +        T  + +L
Sbjct: 17   DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYEL 151
               + K    +   + +  +  ++  + AK  +  L    EG+  VK ++  +L  ++E 
Sbjct: 77   ALGNSKALNALFNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFEN 136

Query: 152  FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D+
Sbjct: 137  LKMKEEECIHDFHMTILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDI 196

Query: 212  NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
              + V++L+ SL+  E+ L++  T KKSK++A  S              E EE+  D D+
Sbjct: 197  CNMRVDELIGSLQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDT 243

Query: 272  DEDQSVKMAMLSNK----LEYLARKQKKFLS------KRGSYKNSKKEDQ----KG--CF 315
            DE  +  +  L  +    L  + R+QK  +       ++GS    K +++    KG  C 
Sbjct: 244  DEGLTNAVVFLGKQFNKVLNRMDRRQKPHVRNISLDIRKGSEYQRKSDEKPSHSKGIQCR 303

Query: 316  NCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEA 375
             C+  GH  A+CP   K++ KG S   S                  +D +SE  SD   +
Sbjct: 304  GCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD---S 342

Query: 376  DDDAKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELT 435
            D D  A  G   +            +ED ++  S+I   EL    +EL    E    +  
Sbjct: 343  DRDVNALTGRFES------------AEDSSDTDSEITFDELAIFYRELCIKSEKILQQEA 390

Query: 436  DLKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNKH 495
             LK+   +L  ++++   E+   + E+ GF  +++  E+  KS+     +  +KGS    
Sbjct: 391  QLKKVIANLEAEKEAHEEEISKLKGEV-GF--LNSKLENMTKSI-----KMLNKGSD--- 439

Query: 496  EIALDDFIMAGIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFV 555
               LD+ +  G    KV +          +G+G++ + +   ++            + FV
Sbjct: 440  --MLDZVLQLG---KKVGNQ---------RGLGFNHKSAGRTTM------------TEFV 473

Query: 556  P-EGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLI 614
            P + +   T+ Q +    G+Q K  SK +  +     K                     I
Sbjct: 474  PAKNSTGATMSQHRSRHHGTQQK-RSKRKKWRCHYCGK------------------YGHI 514

Query: 615  KPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDS 674
            KP               ++S + +    K K+++    L +H  +   A+E    WYLDS
Sbjct: 515  KPFCYHLHGHPHHGTQGSSSGRKMMWVPKHKIVS----LVVHTSLRASAKE---DWYLDS 567

Query: 675  GCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGLKHN 733
            GCSRHMTG K   + +       V FG    GKI G G + +  + S+N V LV GL  N
Sbjct: 568  GCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHEGLPSLNKVLLVKGLTVN 627

Query: 734  LLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSM 793
            L+SISQ CD  ++V F+K+ C LV  +   +  KG R ++   +     +     CL S 
Sbjct: 628  LISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQESSHSSTCLFSK 686

Query: 794  NDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDI 853
             D+  +WH+R GH + R + KI     V+G+PN+      +CG CQ GK VK S +    
Sbjct: 687  EDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQKLQH 746

Query: 854  VSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCT 913
             +TSR LELLH+DL GP+   SL G +Y  V+VDD+SR+TWV FI+ K    EVF     
Sbjct: 747  QTTSRVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSL 806

Query: 914  QIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQE 973
            ++Q EK+  I ++RSDHG EFEN  F  FC   GI HEFS+  TPQQNG+VERKNRTLQE
Sbjct: 807  RLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQE 866

Query: 974  MARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCT 1033
             AR M+H   L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P + +FH FG  
Sbjct: 867  AARVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHIFGSP 926

Query: 1034 CYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTS 1093
            CYIL  ++  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P  K  
Sbjct: 927  CYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARK-- 984

Query: 1094 EQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNESAS 1153
                                  D E+  +      A+    AE+          +N  ++
Sbjct: 985  ---------------------KDVEEDVRTSGDNVADTAKSAEN---------AENSDSA 1014

Query: 1154 EDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEE 1213
             D  +  Q   +P  + +  HP+ELIIG  +    TRS   +  S    +S IEPK V+E
Sbjct: 1015 TDEPNINQPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPKNVKE 1074

Query: 1214 ALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLV 1273
            AL+D+ WI AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRNKARLV
Sbjct: 1075 ALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLV 1134

Query: 1274 AQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVK 1333
            AQGY+Q EG+++ ETFAPVARLE+IRLLL  A      LYQMDVKS FLNG + EE YV+
Sbjct: 1135 AQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVE 1194

Query: 1334 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1393
            QP GF D  HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF +   +
Sbjct: 1195 QPKGFVDPTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAE 1254

Query: 1394 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1453
            +++I QIYVDDI+FG  +  + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +++ Q
Sbjct: 1255 NLMIAQIYVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQ 1314

Query: 1454 TKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDI 1513
            +KY K ++KKF +E+     TP      LSK++ GT VDQ LYR MIGSLLYLTASRPDI
Sbjct: 1315 SKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDI 1374

Query: 1514 LFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRI 1573
             ++V +CAR+Q++P+ SHL  VKRI +Y+ GT++ G++Y       L+G+CDAD+AG   
Sbjct: 1375 TYAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSGSMLVGYCDADWAGSAD 1434

Query: 1574 ERKSTSGNCQFLGENLIS 1591
            +RKSTSG C +LG NLIS
Sbjct: 1435 DRKSTSGGCFYLGNNLIS 1452


>gb|AAO73525.1| gag-pol polyprotein [Glycine max]
          Length = 1576

 Score =  943 bits (2437), Expect = 0.0
 Identities = 590/1582 (37%), Positives = 856/1582 (53%), Gaps = 174/1582 (10%)

Query: 37   DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKL 91
            D   + +WK  M +F+  LD   W  +  G +    LD EG   +        T  + +L
Sbjct: 17   DGTNYEYWKARMVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDEL 76

Query: 92   YKKHHKIRGIIVASIPRTEYMKMSDKSTAK-AMFASLCANFEGSKNVKEAKALMLVHQYE 150
               + K    +   + +  +  ++  + AK A    L    EG+  VK ++  +L  ++E
Sbjct: 77   ALGNSKALNALFNGVDKNIFRLINTCTVAKDACGEILKTTHEGTSKVKMSRLQLLATKFE 136

Query: 151  LFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKD 210
              +MK++E I + +     + +    L +       V KILRSLP R+  KVTAIEEA+D
Sbjct: 137  NLKMKEEECIHDFHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQD 196

Query: 211  LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 270
            +  + V++L+ SL+  E+ L++    KKSK++A  S              E EE+  D D
Sbjct: 197  ICNMRVDELIGSLQTFELGLSDRN-EKKSKNLAFVSN------------DEGEEDEYDLD 243

Query: 271  SDEDQSVKMAMLSNK----LEYLARKQKK------FLSKRGSYKNSKKEDQ----KG--C 314
            +DE  +  + +L  +    L  + R+QK       F  ++GS  + K +++    KG  C
Sbjct: 244  TDEGLTNAVGLLGKQFNKVLNRMDRRQKPHVRNIPFDIRKGSEYHKKSDEKPSHSKGIQC 303

Query: 315  FNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEE 374
              C+  GH  A+CP   K++ KG S   S                  +D +SE  SD   
Sbjct: 304  HGCEGYGHIKAECPTHLKKQRKGLSVCRS------------------DDTESEQESD--- 342

Query: 375  ADDDAKAAMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNEL 434
            +D D  A  G           E++ DS D      +I   EL  S ++L    E    + 
Sbjct: 343  SDRDVNALTGRF---------ESDEDSSD-----IEITFDELAISYRKLCIKSEKILQQE 388

Query: 435  TDLKEKYVDLMKQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGN 493
              LK+   +L  ++++   E+     ELKG    +++  E+  KS+     +  +KGS  
Sbjct: 389  AQLKKVIANLEAEKEAHEEEIS----ELKGEVGFLNSKLENMTKSI-----KMLNKGSD- 438

Query: 494  KHEIALDDFIMAGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLK 551
                 LD+ +  G              KN G  +G+G++ + +   ++            
Sbjct: 439  ----MLDEVLQLG--------------KNVGNQRGLGFNHKSACRITM------------ 468

Query: 552  STFVP-EGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVH 610
            + FVP + +   T+ Q +    G+Q K              KS  K  +     +     
Sbjct: 469  TEFVPAKNSTGATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK----- 509

Query: 611  QNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSW 670
               IKP              +++S + +    K K+++    L +H  +   A+E    W
Sbjct: 510  YGHIKPFCYHLHGHPHHGTQSSSSGRKMMWVPKHKIVS----LVVHTSLRASAKE---DW 562

Query: 671  YLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDG 729
            YLDSGCSRHMTG K   + +       V FG    GKI G G + +  + S+N V LV G
Sbjct: 563  YLDSGCSRHMTGVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKG 622

Query: 730  LKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVC 789
            L  NL+SISQ CD  ++V F+K+ C LV  +   +  KG R ++   +           C
Sbjct: 623  LTANLISISQLCDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTC 681

Query: 790  LLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFK 849
            L S  D+  +WH+R GH + R + KI     V+G+PN+      +CG CQ GK VK S +
Sbjct: 682  LSSKEDEVKIWHQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSHQ 741

Query: 850  SKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFS 909
                 +TS  LELLH+DL GP+   SL G +Y  V+VDD+SR+TWV FI+ K    EVF 
Sbjct: 742  KLQHQTTSMVLELLHMDLMGPMQVESLGGKRYAYVVVDDFSRFTWVNFIREKSDTFEVFK 801

Query: 910  SFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNR 969
                ++Q EK+  I ++RSDHG EFEN  F  FC   GI HEFS+  TPQQNG+VERKNR
Sbjct: 802  ELSLRLQREKDCVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNR 861

Query: 970  TLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQ 1029
            TLQE  R M+H   L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P + +FH 
Sbjct: 862  TLQEATRVMLHAKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHI 921

Query: 1030 FGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPG 1089
            FG  CYIL  ++  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P 
Sbjct: 922  FGSPCYILADREQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPA 981

Query: 1090 SKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQN 1149
             K   + +      +  D ++S            E++ +++ T +  + ++ + SP ++ 
Sbjct: 982  RKKDVEEDVRTSEDNVADTAKS-----------AENAEKSDSTTDEPNINQPDKSPFIRI 1030

Query: 1150 ESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPK 1209
                        Q +QPK         ELIIG  +    TRS   +  S    +S IEPK
Sbjct: 1031 ------------QKMQPK---------ELIIGDPNRGVTTRSREIEIVSNSCFVSKIEPK 1069

Query: 1210 TVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNK 1269
             V+EAL+D+ WI AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRNK
Sbjct: 1070 NVKEALTDEFWINAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNK 1129

Query: 1270 ARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEE 1329
            ARLVAQGY+Q EG+++ ETFAPVARLE+IRLLL  A      LYQMDVKS FLNG + EE
Sbjct: 1130 ARLVAQGYTQIEGVDFDETFAPVARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEE 1189

Query: 1330 VYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRR 1389
             YV+QP GF D  H DHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF +
Sbjct: 1190 AYVEQPKGFVDPTHLDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVK 1249

Query: 1390 TLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGV 1449
               ++++I QIYVDDI+FG  +  + + F   MQ EFEMS++GEL +FLG+Q+ Q ++ +
Sbjct: 1250 QDAENLMIAQIYVDDIVFGGMSNEMLRHFVPQMQSEFEMSLVGELHYFLGLQVKQMEDSI 1309

Query: 1450 YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTAS 1509
            ++ Q+KY K ++KKF +E+     TP      LSK++ GT VDQ LYR MIGSLLYLTAS
Sbjct: 1310 FLSQSKYAKNIVKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQNLYRSMIGSLLYLTAS 1369

Query: 1510 RPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYA 1569
            RPDI F+V +CAR+Q++P+ SHL  VKRI +Y+ GT++ G++Y    D  L+G+CDAD+A
Sbjct: 1370 RPDITFAVGVCARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWA 1429

Query: 1570 GDRIERKSTSGNCQFLGENLIS 1591
            G   +RK TSG C +LG NLIS
Sbjct: 1430 GSADDRKCTSGGCFYLGTNLIS 1451


>gb|AAC64917.1| gag-pol polyprotein [Glycine max]
          Length = 1550

 Score =  939 bits (2428), Expect = 0.0
 Identities = 589/1571 (37%), Positives = 844/1571 (53%), Gaps = 173/1571 (11%)

Query: 48   MYSFIMGLDEELWDILEDGVDDLD-LDEEGAAIDR----RIHTPAQKKLYKKHHKIRGII 102
            M +F+  LD   W  +  G +    LD EG   +        T  + +L   + K    +
Sbjct: 1    MVAFLKSLDSRTWKAVIKGWEHPKMLDTEGKPTNELKPEEDWTKEEDELALGNSKALNAL 60

Query: 103  VASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEE 162
               + +  +  ++  + AK  +  L    EG+  VK ++  +L  ++E  +MK++E I E
Sbjct: 61   FNGVDKNIFRLINTCTVAKDAWEILKTTHEGTSKVKMSRLQLLATKFENLKMKEEECIHE 120

Query: 163  MYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSS 222
             +     + +    L +       V KILRSLP R+  KVTAIEEA+D+  + V++L+ S
Sbjct: 121  FHMNILEIANACTALGERMTDEKLVRKILRSLPKRFDMKVTAIEEAQDICNMRVDELIGS 180

Query: 223  LKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAML 282
            L+  E+ L++  T KKSK++A  S              E EE+  D D+DE  +  + +L
Sbjct: 181  LQTFELGLSDR-TEKKSKNLAFVSN------------DEGEEDEYDLDTDEGLTNAVVLL 227

Query: 283  SNK----LEYLARKQKK------FLSKRGSYKNSKKEDQKG-------CFNCKKPGHFIA 325
              +    L  + R+QK       F  ++GS +  K+ D+K        C  C+  GH  A
Sbjct: 228  GKQFNKVLNRMDRRQKPHVRNIPFDIRKGS-EYQKRSDEKPSHSKGIQCHGCEGYGHIKA 286

Query: 326  DCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAAMGL 385
            +CP   K++ KG S   S                  +D +SE  SD   +D D  A  G 
Sbjct: 287  ECPTHLKKQRKGLSVCRS------------------DDTESEQESD---SDRDVNALTGR 325

Query: 386  VATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLM 445
              +            +ED ++  S+I   EL  S +EL    E    +   LK+   +L 
Sbjct: 326  FES------------AEDSSDTDSEITFDELAISYRELCIKSEKILQQEAQLKKVIANLE 373

Query: 446  KQQKSTLLELKASEEELKG-FNLISTTYEDRLKSLCQKLQEKCDKGSGNKHEIALDDFIM 504
             ++++   E+     ELKG    +++  E+  KS+     +  +KGS       LD+ + 
Sbjct: 374  AEKEAHEDEIS----ELKGEIGFLNSKLENMTKSI-----KMLNKGSD-----LLDEVLQ 419

Query: 505  AGIDRSKVASMIYSTYKNKG--KGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVP-EGTNA 561
             G              KN G  +G+G++ + +   ++            + FVP + +  
Sbjct: 420  LG--------------KNVGNQRGLGFNHKSAGRTTM------------TEFVPAKNSTG 453

Query: 562  VTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPESKIP 621
             T+ Q +    G+Q K              KS  K  +     +        IKP     
Sbjct: 454  ATMSQHRSRHHGTQQK--------------KSKRKKWRCHYCGK-----YGHIKPFCYHL 494

Query: 622  KQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMT 681
                     +++S      G K   +   K +S+     LRA  K+  WYLDSGCSRHMT
Sbjct: 495  HGHPHHGTQSSSS------GRKMMWVPKHKTVSLVVHTSLRASAKE-DWYLDSGCSRHMT 547

Query: 682  GEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGLKHNLLSISQF 740
            G K   + +       V FG    GKI G G + +  + S+N V LV GL  NL+SISQ 
Sbjct: 548  GVKEFLVNIEPCSTSYVTFGDGSKGKITGMGKLVHDGLPSLNKVLLVKGLTANLISISQL 607

Query: 741  CDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVW 800
            CD  ++V F+K+ C LV  +   +  KG R ++   +           CL S  D+  +W
Sbjct: 608  CDEGFNVNFTKSEC-LVTNEKSEVLMKGSRSKDNCYLWTPQETSYSSTCLFSKEDEVKIW 666

Query: 801  HKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPL 860
            H+R GH + R + KI     V+G+PN+      +CG CQ GK VK S +     +TSR L
Sbjct: 667  HQRFGHLHLRGMKKIIDKGAVRGIPNLKIEEGRICGECQIGKQVKMSNQKLQHQTTSRVL 726

Query: 861  ELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKE 920
            ELLH+DL GP+   SL   +Y  V+VDD+SR+TWV FI+ K    EVF     ++Q EK+
Sbjct: 727  ELLHMDLMGPMQVESLGRKRYAYVVVDDFSRFTWVNFIREKSDTFEVFKELSLRLQREKD 786

Query: 921  LKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIH 980
              I ++RSDHG EFEN  F  FC   GI HEFS+  TPQQNG+VERKNRTLQE AR M+H
Sbjct: 787  CVIKRIRSDHGREFENSKFTEFCTSEGITHEFSAAITPQQNGIVERKNRTLQEAARVMLH 846

Query: 981  ENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTK 1040
               L  + WAEA+NT+CYI NR+ +R     T YE++KGR+P + +FH  G  CYIL  +
Sbjct: 847  AKELPYNLWAEAMNTACYIHNRVTLRRGTPTTLYEIWKGRKPTVKHFHICGSPCYILADR 906

Query: 1041 DYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNA 1100
            +  +K D K+  GIFLGYS  S+AYRV+NS T+ V ES++V  DD  P  K         
Sbjct: 907  EQRRKMDPKSDAGIFLGYSTNSRAYRVFNSRTRTVMESINVVVDDLTPARK--------- 957

Query: 1101 GTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNESASEDFQDNT 1160
                           D E+  +      A+    AE+          +N  ++ D  +  
Sbjct: 958  --------------KDVEEDVRTSGDNVADTAKSAEN---------AENSDSATDEPNIN 994

Query: 1161 QQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGW 1220
            Q   +P  + +  HP+ELIIG  +    TRS   +  S    +S IEPK V+EAL+D+ W
Sbjct: 995  QPDKRPSIRIQKMHPKELIIGDPNRGVTTRSREIEIISNSCFVSKIEPKNVKEALTDEFW 1054

Query: 1221 ILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQ 1280
            I AMQEEL QF+RN+VW+LVP+P   N+I TKW+F+NK NE+G +TRNKARLVAQGY+Q 
Sbjct: 1055 INAMQEELEQFKRNEVWELVPRPEGTNVIGTKWIFKNKTNEEGVITRNKARLVAQGYTQI 1114

Query: 1281 EGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFED 1340
            EG+++ ETFAP ARLE+IRLLL  A      LYQMDVKS FLNG + EE YV+QP GF D
Sbjct: 1115 EGVDFDETFAPGARLESIRLLLGVACILKFKLYQMDVKSAFLNGYLNEEAYVEQPKGFVD 1174

Query: 1341 LKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQI 1400
              HPDHVY+LKK+LYGLKQAPRAWY+RL+ FL +  + +G +D TLF +   ++++I QI
Sbjct: 1175 PTHPDHVYRLKKALYGLKQAPRAWYERLTEFLTQQGYRKGGIDKTLFVKQDAENLMIAQI 1234

Query: 1401 YVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKEL 1460
            YVDDI+FG  +  + + F + MQ EFEMS++GEL +FLG+Q+ Q ++ +++ Q+KY K +
Sbjct: 1235 YVDDIVFGGMSNEMLRHFVQQMQSEFEMSLVGELTYFLGLQVKQMEDSIFLSQSKYAKNI 1294

Query: 1461 LKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLC 1520
            +KKF +E+     TP      LSK++ GT VDQ LYR MIGSLLYLTASRPDI ++V  C
Sbjct: 1295 VKKFGMENASHKRTPAPTHLKLSKDEAGTSVDQSLYRSMIGSLLYLTASRPDITYAVGGC 1354

Query: 1521 ARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSG 1580
            AR+Q++P+ SHL  VKRI +Y+ GT++ G++Y    D  L+G+CDAD+AG   +RKST G
Sbjct: 1355 ARYQANPKISHLNQVKRILKYVNGTSDYGIMYCHCSDSMLVGYCDADWAGSVDDRKSTFG 1414

Query: 1581 NCQFLGENLIS 1591
             C +LG N IS
Sbjct: 1415 GCFYLGTNFIS 1425


>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
            Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)]
          Length = 2011

 Score =  921 bits (2381), Expect = 0.0
 Identities = 587/1589 (36%), Positives = 839/1589 (51%), Gaps = 161/1589 (10%)

Query: 29   GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
            GKAP FNG    +S WK  M + +  +   +W I++ G           AI     T   
Sbjct: 9    GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGF----------AITGTPLTEID 56

Query: 89   KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQ 148
             +  K + +   ++  S+ + E+ ++S+  TA  ++  L    E +   K+AK   L  Q
Sbjct: 57   HRNLKLNAQAMNVLFNSLSQEEFDRVSNLETAYEIWNKLAEIHESTSEYKDAKLHFLKIQ 116

Query: 149  YELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
            YE F M   ES+ +MY R   +V+ L+ L  +Y   +   K+LR+LP ++   VT +  +
Sbjct: 117  YETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTNLEVAQKMLRALPEKYETLVTMLINS 176

Query: 209  KDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
             D++ ++   L+  +  ++M    ++  KK    A PSK   +  ++    S+S+    +
Sbjct: 177  -DMSRMTPASLLGKINTNDM----YKLKKKEMEEASPSKKCIALQAEVEDKSKSKVNEVN 231

Query: 269  GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKG-------CFNCKKPG 321
             D +E+    + +L+ +   L  ++K+    RGS  N ++  +         CF C    
Sbjct: 232  KDLEEE----IVLLARRFNDLLGRRKE--RGRGSNSNRRRNRRPNKTLSNLRCFEC---- 281

Query: 322  HFIADCPDLQKEKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKA 381
                   D  +E       +         K+ K +++A  E                  A
Sbjct: 282  -------DSNEESSASSGSEEEGGDDASSKKKKMAVVAIKEA-------------PSLFA 321

Query: 382  AMGLVATVSSEAVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKY 441
             + L+A   S+  S ++S+S+D+ +  S            EL+S+FE    EL    EK 
Sbjct: 322  PLCLMAKSPSKVTSLSDSESDDDCDDVS----------YDELVSMFE----ELHAYSEKE 367

Query: 442  VDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNKHEIALDD 501
            +   K  K     L+   EELK       T  +RL    +KL+E  D         AL D
Sbjct: 368  IIKFKTLKKDHASLEVLYEELK-------TSHERLTISHEKLKEAHDNLLSTTQHGALID 420

Query: 502  FIMAGIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTFVPEGTNA 561
                                     +G S            CD + D          +++
Sbjct: 421  -------------------------VGIS------------CDLLDDSATCHIAHVASSS 443

Query: 562  VTV----VQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLIKPE 617
            ++     +   P +S S   ++    +L   V+  ++ K Q  K+ K  E   +     +
Sbjct: 444  ISTSCDDLMDMPNSSSSSC-VSICDASL---VVENNELKEQVAKLNKSLERCFKGKNTLD 499

Query: 618  SKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQR--------- 668
              + +Q+   NK        + KG KP      + +  + K C + RE            
Sbjct: 500  KILSEQQCILNKEGLGF--ILKKGKKPSH-RATRFVKSNGKYCSKCREVGHLVNYRTGGS 556

Query: 669  SWYLDSGCSRHMTGEKALFLTLTM--KDGGEVKFGGNQTGKIIGTGTIGNSS-ISINNVW 725
             W LDSGC++HMTG++A+F T  +   +  +V FG N  GK+IG G I  S+ +SI+NV 
Sbjct: 557  HWVLDSGCTQHMTGDRAMFTTFEVGGNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVS 616

Query: 726  LVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQ 785
            LV  L  NLLS++Q CD      F      + +  DKS  FKG R  N+Y  +F+     
Sbjct: 617  LVKSLNFNLLSVAQICDLVLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLGDFNSSEAN 676

Query: 786  KVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVK 845
               CL++     W+WH+RL H     +SK+SK  LV GL ++ +  D LC ACQ GK V 
Sbjct: 677  LKTCLVAKTSLGWLWHRRLAHVGMNQLSKLSKRDLVVGLKDVKFEKDKLCSACQAGKQVA 736

Query: 846  SSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYAC 905
             S  +K I+STSRPLELLH++ FGP    S+ G+ + LVIVDDYSR+TW+ F+  K    
Sbjct: 737  CSHPTKSIMSTSRPLELLHMEFFGPTTYKSIGGNSHCLVIVDDYSRYTWMFFLHDKSIVA 796

Query: 906  EVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVE 965
            E+F  F  + Q+E    ++K+RSD+G +F+N   E +C+  GI HE S+  +PQQNGVVE
Sbjct: 797  ELFKKFAKRGQNEFNCTLVKIRSDNGSKFKNTNIEDYCDDLGIKHELSATYSPQQNGVVE 856

Query: 966  RKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNIS 1025
             KNRTL EMARTM+ E  ++  FWAEA+NT+C+  NR+Y+  +L+KT+YEL  GR+PN++
Sbjct: 857  MKNRTLIEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRLLKKTSYELIVGRKPNVA 916

Query: 1026 YFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDD 1085
            YF  FGC CYI      L KF+++   G  LGY+  SKAYRVYN     VEE+  V+FD+
Sbjct: 917  YFRVFGCKCYIYRKGVRLTKFESRCDEGFLLGYASNSKAYRVYNKNKGIVEETADVQFDE 976

Query: 1086 REPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSP 1145
               GS+   ++  + G      A ++    D  K  +VE  P    T +  S S   S  
Sbjct: 977  TN-GSQEGHENLDDVGDEGLMRAMKNMSIGD-VKPIEVEDKPSTS-TQDEPSTSATPSQA 1033

Query: 1146 IVQNESASEDFQDNTQQVIQPKFKH---KSSHPEELIIGSKDSPRRTRSHFRQEESLIGL 1202
             V+ E      ++  Q +  P   H      HP + ++G      +TRS           
Sbjct: 1034 QVEVE------EEKAQDLPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVASICEHYSF 1087

Query: 1203 LSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQ 1262
            +S +EPK V+EAL D  WI AM +ELN F RN VW LV +    N+I TKWVFRNK +E 
Sbjct: 1088 VSCLEPKHVDEALCDPDWINAMHKELNNFARNKVWTLVERLRDHNVIGTKWVFRNKQDEN 1147

Query: 1263 GEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFL 1322
            G V RNKAR VAQG++Q EG+++ ETFAPV RLE I +LL++A    I L+QMDVKS FL
Sbjct: 1148 GLVVRNKARFVAQGFTQVEGLDFGETFAPVTRLEAICILLAFASCFNIKLFQMDVKSAFL 1207

Query: 1323 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQV 1382
            NG I E V+V+QPPGFED K+P+HVYKL K+LYGLKQAPRAWY+RL +FL+  DF+ G+V
Sbjct: 1208 NGEIAELVFVEQPPGFEDPKYPNHVYKLSKALYGLKQAPRAWYERLRDFLLSKDFKIGKV 1267

Query: 1383 DTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQI 1442
            DTTLF + +  D  + QIYVDDIIFG TN   CKEF  +M  EFEMSM+GEL FF G+QI
Sbjct: 1268 DTTLFTKIIGDDFFVCQIYVDDIIFGCTNEVFCKEFGDMMSREFEMSMIGELSFFHGLQI 1327

Query: 1443 NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGS 1502
             Q K+G               F LED K + TPM     L  ++ G  VD KLYR MIGS
Sbjct: 1328 KQLKDGT--------------FGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGS 1373

Query: 1503 LLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIG 1562
            LLYLTASRPDI+FSVC+CARFQ+ P+E HL AVKRI RYLK ++ +GL Y K   +KL+G
Sbjct: 1374 LLYLTASRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVG 1433

Query: 1563 FCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            + D+DYAG +++RKSTSG+CQ LG +L+S
Sbjct: 1434 YSDSDYAGCKVDRKSTSGSCQMLGRSLVS 1462


>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1577

 Score =  903 bits (2333), Expect = 0.0
 Identities = 580/1583 (36%), Positives = 821/1583 (51%), Gaps = 160/1583 (10%)

Query: 29   GKAPKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDG--VDDLDLDEEGAAIDRR---I 83
            GKAP FNG    +S WK  M + +  +   +W I++ G  +    L E    ID R   +
Sbjct: 9    GKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVDVGFAITGTPLME----IDHRNLQL 62

Query: 84   HTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKAL 143
            +  A   L+            S+ + E+ ++S+  TA  ++  L    EG+   K+AK  
Sbjct: 63   NAQAMNALFN-----------SLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAKLH 111

Query: 144  MLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVT 203
             L  QYE F M   ES+ +MY R   +V+ L+ L  +Y   +   K+LR+LP ++   VT
Sbjct: 112  FLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETLVT 171

Query: 204  AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 263
             +  + D++ ++   L+  +  ++M                  +GK S S++        
Sbjct: 172  MLINS-DMSRMTPASLLGKINTNDMR---------------KERGKGSNSNR-------- 207

Query: 264  EESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHF 323
                                                R + + +K      CF C + GHF
Sbjct: 208  ------------------------------------RRNRRPNKTLSNLRCFECGEKGHF 231

Query: 324  IADCPDLQKEKFKGKSKKSS-FNSSKFRKQIKKSLMATWEDLDSESGSDKEEADDDAKAA 382
             + CP    +  K   KKS  +   K  K+  K + A  E+ DS   S            
Sbjct: 232  ASKCPSKDDDGDKSSKKKSGGYKLMKKLKKEGKKIEAFIEEWDSNEESSPHPGPRKKMVM 291

Query: 383  MGLVATVSSEAVSEAESDSEDENEV-YSKIPRQELVD-----SLKELLSLFEHRTNELTD 436
            M          +          + V + K P  E  D     S  EL+S+FE    EL  
Sbjct: 292  MQAPGRRRWPLLPSRRLHHSSLHFVSWQKAPLSESDDDCDDVSYDELVSMFE----ELHA 347

Query: 437  LKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKG-SGNKH 495
              EK +   K  K     L+   EELK       T  +RL    +KL+E  D   S  +H
Sbjct: 348  YSEKEIVKFKALKKDHASLEVLYEELK-------TSHERLTISHEKLKEAHDNLLSTTQH 400

Query: 496  EIALDDFIMAGI-DRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKSTF 554
               +D  I   + D S    + Y                    S+ + CD + D   S+ 
Sbjct: 401  GALIDVGISCDLLDDSATFHIAYVASS----------------SISTSCDDLVDMSSSS- 443

Query: 555  VPEGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQNLI 614
                ++ V++  +      ++ K      N +++   K      KI   +R     + L 
Sbjct: 444  ---SSSCVSICDASLVVENNELKEQVAKLNKRLERCFKGKNTLDKILSEQRCILNKEGL- 499

Query: 615  KPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDS 674
                 IPK+  + +  AT   K+  + +   +  D   + +     +        W LDS
Sbjct: 500  ---GFIPKKGKKPSHRATRFVKSNGRLMMVALFLD---MWVPLYSVVNYHTGGSHWVLDS 553

Query: 675  GCSRHMTGEKALFLTLTM--KDGGEVKFGGNQTGKIIGTGTIGNSS-ISINNVWLVDGLK 731
            GC++HMTG++A+F T  +   +  +V FG N  GK+IG G I  S+ +SI+NV LV  L 
Sbjct: 554  GCTQHMTGDRAMFTTFEVGRNEQEKVTFGDNSKGKVIGLGKIAISNDLSIDNVSLVKSLN 613

Query: 732  HNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLL 791
             NLLS++Q CD      F      + +  DKS  FKG R  N+Y ++F+        CL+
Sbjct: 614  FNLLSVAQICDLSLSCAFFPQEVIVSSLLDKSCVFKGFRYGNLYLVDFNSSEANLKTCLV 673

Query: 792  SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSK 851
            +     W+WH+RL H     +SK SK  LV GL ++ +  D LC ACQ GK V  S  +K
Sbjct: 674  AKTSLGWLWHRRLAHVGMNQLSKFSKRDLVMGLKDVKFEKDKLCSACQAGKQVACSHPTK 733

Query: 852  DIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSF 911
             I+STS+PLELLH+DLF P    S+ G+ + LVIVDDYSR+TWV F+  K    ++F  F
Sbjct: 734  SIMSTSKPLELLHMDLFDPTTYKSIGGNSHCLVIVDDYSRYTWVFFLHDKSIVADLFKKF 793

Query: 912  CTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTL 971
              + Q+E    ++K+RS+ G EF+N   E +C+  GI HE  +  +PQQNGVVERKNRTL
Sbjct: 794  AKRAQNEFSCTLVKIRSNIGSEFKNTNIEDYCDDLGIKHELFATYSPQQNGVVERKNRTL 853

Query: 972  QEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFG 1031
             EMARTM+ E  ++  FWAEA+NT+C+  NR+Y+  +L+KT+YE+  GR+PNI+YF  FG
Sbjct: 854  IEMARTMLDEYGVSDSFWAEAINTACHATNRLYLHRVLKKTSYEVIVGRKPNIAYFRVFG 913

Query: 1032 CTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSK 1091
            C CYI      L KF+++   G  LGY+ +SKAYRVYN     VEE+  V+FD+   GS+
Sbjct: 914  CKCYIHRKGVRLTKFESRCDEGFLLGYASKSKAYRVYNKNKGIVEETADVQFDETN-GSQ 972

Query: 1092 TSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNES 1151
               ++  + G        ++    D  K  +VE  P       + S  +  S+  + +++
Sbjct: 973  EGHENLDDVGDEGLMRVMKNMSIGD-VKPIEVEDKP-------STSTQDEPSTSAMPSQA 1024

Query: 1152 ASEDFQDNTQQVIQPKFKH---KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEP 1208
              E  ++  Q+   P   H      HP + ++G      +TRS           +S +E 
Sbjct: 1025 QVEVEEEKAQEPPMPPRIHTALSKDHPIDQVLGDISKGVQTRSRVTSICEHYSFVSCLER 1084

Query: 1209 KTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRN 1268
            K V+EAL D  W+ AM EEL  F RN VW LV +P   N+I TKWVFRNK +E G V RN
Sbjct: 1085 KHVDEALCDPDWMNAMHEELKNFARNKVWTLVERPRDHNVIGTKWVFRNKQDENGLVVRN 1144

Query: 1269 KARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEE 1328
            KARLVAQG++Q EG+++ ETFAPVARLE I +LL++A    I L+QMDVKS FLN     
Sbjct: 1145 KARLVAQGFTQVEGLDFGETFAPVARLEAICILLAFASCFDIKLFQMDVKSAFLN----- 1199

Query: 1329 EVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFR 1388
                       D K+P+HVYKL K+LYGL+QAPRAWY+RL +FL+  DF+ G+VD TLF 
Sbjct: 1200 -----------DTKYPNHVYKLSKALYGLRQAPRAWYERLRDFLLSKDFKIGKVDITLFT 1248

Query: 1389 RTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG 1448
            + +  D  + QIYVDDIIFGSTN   CKEF  +M  EFEMSM+GEL FFLG+QI Q K G
Sbjct: 1249 KIIGDDFFVYQIYVDDIIFGSTNEVFCKEFGDMMSREFEMSMIGELSFFLGLQIKQLKNG 1308

Query: 1449 VYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTA 1508
             +V QTKY K+LLK+F LED K + TPM     L  ++ G  VD KLYR MIGSLLYLT 
Sbjct: 1309 TFVSQTKYIKDLLKRFGLEDAKPIKTPMATNGHLDLDEGGKPVDLKLYRSMIGSLLYLTV 1368

Query: 1509 SRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADY 1568
            SRPDI+FSVC+CARFQ+ P+E HL AVKRI RYLK ++ +GL Y K   +KL+G+ D DY
Sbjct: 1369 SRPDIMFSVCMCARFQAAPKECHLVAVKRILRYLKHSSTIGLWYPKGAKFKLVGYSDPDY 1428

Query: 1569 AGDRIERKSTSGNCQFLGENLIS 1591
            AG +++RKSTS +CQ LG +L+S
Sbjct: 1429 AGCKVDRKSTSSSCQMLGRSLVS 1451


>gb|AAD20307.1| copia-type pol polyprotein [Zea mays]
          Length = 1063

 Score =  881 bits (2276), Expect = 0.0
 Identities = 473/948 (49%), Positives = 610/948 (63%), Gaps = 48/948 (5%)

Query: 680  MTGEKALFLTLTMKDGGE--VKFGGNQTGKIIGTGTIGNS-SISINNVWLVDGLKHNLLS 736
            MTGEK +F +       +  + FG    G + G G I  S   SI+NV+LVD L +NLLS
Sbjct: 1    MTGEKRMFSSYEKNQDPQRAITFGDGNQGLVKGLGKIAISPDHSISNVFLVDSLDYNLLS 60

Query: 737  ISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDK 796
            +SQ C   Y+  F+    T+  + D SI FKG     +Y ++F D A+    CL++  + 
Sbjct: 61   VSQLCQMGYNCLFTDIGVTVFRRSDDSIAFKGVLEGQLYLVDF-DRAELDT-CLIAKTNM 118

Query: 797  KWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVST 856
             W+WH+RL H   + + K+ K + + GL N+ +  D +C ACQ GK V +    K+I++T
Sbjct: 119  GWLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGTHHPHKNIMTT 178

Query: 857  SRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQ 916
             RPLELLH+DLFGP+   S+ GSKY LVIVDDYSR+TWV F++ K    E    F  + Q
Sbjct: 179  DRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQEKSQTQETLKGFLRRAQ 238

Query: 917  SEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMAR 976
            +E  L+I K+RSD+G EF+N   E F E+ GI HEFSSP TPQQNGVVERKNRTL +MAR
Sbjct: 239  NEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVERKNRTLLDMAR 298

Query: 977  TMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYI 1036
            TM+ E      FWAEAVNT+CY  NR+Y+  +L+KT+YEL  G++PNISYF  FG  C+I
Sbjct: 299  TMLDEYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISYFRVFGSKCFI 358

Query: 1037 LNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQS 1096
            L  +    KF  K   G  LGY   ++AYRV+N  T  VE S  V FD+   GS+  +  
Sbjct: 359  LIKRGRKSKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDETN-GSQVEQVD 417

Query: 1097 ESNAGTTDS-------------------EDASESDQPSDSEKYTKVESSPEAEITPEA-- 1135
                G   +                   E  S  DQPS S     +++SP  +   EA  
Sbjct: 418  LDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPSSS-----MQASPPTQNEDEAQN 472

Query: 1136 --ESNSEAESSPIVQNESASEDFQDNTQQVIQPKFKH-------KSSHPEELIIGSKDSP 1186
              E N E E      N+   +      +   +P+  H       +  HP + I+G     
Sbjct: 473  DEEQNQEDEPPQDDSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILGDIHKG 532

Query: 1187 RRTRS---HFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKP 1243
              TRS   HF +  S +   S IEP  VEEAL D  W++AMQEELN F RN+VW LVP+P
Sbjct: 533  VTTRSRVAHFCEHYSFV---SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWHLVPRP 589

Query: 1244 FQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLS 1303
             Q N++ TKWVFRNK +E G VTRNKARLVA+GYSQ EG+++ ET+APVARLE+IR+LL+
Sbjct: 590  NQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFGETYAPVARLESIRILLA 648

Query: 1304 YAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRA 1363
            YA  HG  LYQMDVKS FLNG I+EEVYV+QPPGFED ++P+HVY+L K+LYGLKQAPRA
Sbjct: 649  YATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLKQAPRA 708

Query: 1364 WYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQ 1423
            WY+ L +FLI N F+ G+ D TLF +TL+ D+ + QIYVDDIIFGSTN S C+EFS++M 
Sbjct: 709  WYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNKSTCEEFSRIMT 768

Query: 1424 DEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS 1483
             +FEMSMMGELK+FLG Q+ Q +EG ++ QTKYT+++L KF ++D K + TPM     L 
Sbjct: 769  QKFEMSMMGELKYFLGFQVKQLQEGTFICQTKYTQDILTKFGMKDAKPIKTPMGTNGHLD 828

Query: 1484 KEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLK 1543
             +  G  VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQSDP+ESHLTAVKRI RYL 
Sbjct: 829  LDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRILRYLA 888

Query: 1544 GTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
             T   GL Y +   + LIG+ DAD+AG +I RKSTSG CQFLG +L+S
Sbjct: 889  YTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVS 936


>gb|AAC49502.1| Pol [Zea mays] gi|7489803|pir||T04112 pol protein homolog - maize
            retrotransposon Opie-2
          Length = 1068

 Score =  880 bits (2273), Expect = 0.0
 Identities = 462/942 (49%), Positives = 606/942 (64%), Gaps = 28/942 (2%)

Query: 669  SWYLDSGCSRHMTGEKALFLTLTMKDGGE--VKFGGNQTGKIIGTGTIGNSSI-SINNVW 725
            SW +DSGC+ HMTGEK +F +       +  + FG    GK+ G G I  S+  SI+NV+
Sbjct: 10   SWIIDSGCTNHMTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISNEHSISNVF 69

Query: 726  LVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQ 785
            LV+ L +NLLS+SQ C+  Y+  F+  + ++  + D S+ FKG     +Y ++F+     
Sbjct: 70   LVESLGYNLLSVSQLCNMGYNCLFTNIDVSVFRRCDGSLAFKGVLDGKLYLVDFAKEEAG 129

Query: 786  KVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVK 845
               CL++     W+WH+RL H   + + K+ K + V GL N+ +  D  C ACQ GK V 
Sbjct: 130  LDACLIAKTSMGWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFEKDRPCAACQAGKQVG 189

Query: 846  SSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYAC 905
             S  +K++++TSRPLE+LH+DLFGPV   S+ GSKYGLVIVDD+SR+TWV F++ K    
Sbjct: 190  GSHHTKNVMTTSRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQEKSETQ 249

Query: 906  EVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVE 965
                 F  + Q+E ELK+ K+RSD+G EF+N   E F E+ GI HEFS+P TPQQNGVVE
Sbjct: 250  GTLKRFLRRAQNEFELKVKKIRSDNGSEFKNLQVEEFLEEEGIKHEFSAPYTPQQNGVVE 309

Query: 966  RKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNIS 1025
            RKNRTL +MARTM+ E    + FW EAVNT+C+  NR+Y+  +L+ T+YEL  G +PN+S
Sbjct: 310  RKNRTLIDMARTMLGEFKTPECFWTEAVNTACHAINRVYLHRILKNTSYELLTGNKPNVS 369

Query: 1026 YFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDD 1085
            YF  FG  CYIL  K    KF  KA  G  LGY   +KAYRV+N  +  VE S  V FD 
Sbjct: 370  YFRVFGSKCYILVKKGRNSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSGDVVFD- 428

Query: 1086 REPGSKTSEQSESNAGTTDSEDASESDQPSDS------------EKYTKVESSPEAEITP 1133
             E      EQ        D +D  E D P+ +            E+  + + SP   + P
Sbjct: 429  -ETNGSPREQ------VVDCDDVDEEDIPTAAIRTMAIGEVRPQEQDEREQPSPSTMVHP 481

Query: 1134 EAESNSEAESSPIVQNESASED--FQDNTQQV--IQPKFKHKSSHPEELIIGSKDSPRRT 1189
              + + +     +     A +D   ++  Q     Q +   +  HP + I+G       T
Sbjct: 482  PTQDDEQVHQQEVCDQGGAQDDHVLEEEAQPAPPTQVRAMIQRDHPVDQILGDISKGVTT 541

Query: 1190 RSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNII 1249
            RS           +S IEP  VEEAL D  W+LAMQEELN F+RN+VW LVP+P Q N++
Sbjct: 542  RSRLVNFCEHNSFVSSIEPFRVEEALLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVV 600

Query: 1250 ETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHG 1309
             TKWVFRNK +E+G VTRNKARLVA+GY+Q  G+++ ETFAPVARLE+IR+LL+YA +H 
Sbjct: 601  GTKWVFRNKQDERGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLESIRILLAYAAHHS 660

Query: 1310 IILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLS 1369
              LYQMDVKS FLNG I+EEVYV+QPPGFED ++PDHV KL K+LYGLKQAPRAWY+ L 
Sbjct: 661  FRLYQMDVKSAFLNGPIKEEVYVEQPPGFEDERYPDHVCKLSKALYGLKQAPRAWYECLR 720

Query: 1370 NFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMS 1429
            +FLI N F+ G+ D TLF +T   D+ + QIYVDDIIFGSTN   C+EFS++M  +FEMS
Sbjct: 721  DFLIANAFKVGKADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQKSCEEFSRVMTQKFEMS 780

Query: 1430 MMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGT 1489
            MMGEL +FLG Q+ Q K+G ++ QTKYT++LLK+F ++D K   TPM           G 
Sbjct: 781  MMGELNYFLGFQVKQLKDGTFISQTKYTQDLLKRFGMKDAKPAKTPMGTDGHTDLNKGGK 840

Query: 1490 VVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLG 1549
             VDQK YR MIGSLLYL ASRPDI+ SVC+CARFQSDP+E HL AVKRI RYL  T   G
Sbjct: 841  SVDQKAYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKECHLVAVKRILRYLVATPCFG 900

Query: 1550 LLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            L Y K   + L+G+ D+DYAG +++RKSTSG CQFLG +L+S
Sbjct: 901  LWYPKGSTFDLVGYSDSDYAGCKVDRKSTSGTCQFLGRSLVS 942


>ref|NP_910082.1| putative gag-pol polyprotein [Oryza sativa (japonica cultivar-group)]
            gi|28269414|gb|AAO37957.1| putative gag-pol polyprotein
            [Oryza sativa (japonica cultivar-group)]
          Length = 1969

 Score =  867 bits (2240), Expect = 0.0
 Identities = 465/994 (46%), Positives = 620/994 (61%), Gaps = 29/994 (2%)

Query: 618  SKIPKQKDQKNKAATASEKTI-------PKGVKPKVLNDQ-KPLSIHPKVCLRARE---- 665
            S  PK  + K    T+  K +       PK V+ K    Q KP+      C    +    
Sbjct: 685  SSTPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHL 744

Query: 666  -----KQRSWYLDSGCSRHMTGEKALFLTLTMKDGGE-VKFGGNQTGKIIGTGTIG-NSS 718
                 +  SW +DSGCSRHMTGE   F +LT   G E + FG   +G+++  GTI  N  
Sbjct: 745  DFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDK 804

Query: 719  ISINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKIN 778
              + +V LV  LK+NLLS+SQ CD   +V F K    +++  +  + F   RV  V+  N
Sbjct: 805  FMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFAN 863

Query: 779  FSDLADQKVVCLL-SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGA 837
            F   A     CL+ S N   + WH+RLGH  +  +S+IS + L++GLP +    D +C  
Sbjct: 864  FDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVQKDLVCAP 923

Query: 838  CQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKF 897
            C+ GK+  SS K   +V T  P +LLH+D  GP    S+ G  Y LV+VDD+SR++WV F
Sbjct: 924  CRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYF 983

Query: 898  IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRT 957
            ++SK+     F S    +  E    +  +RSD+G EF+N  FE FC+  G+ H+FSSP  
Sbjct: 984  LESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYV 1043

Query: 958  PQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELF 1017
            PQQNGVVERKNRTL EMARTM+ E    + FW EA++ +C+I NR+++R +L KT YEL 
Sbjct: 1044 PQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELR 1103

Query: 1018 KGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEE 1077
             GRRP +S+   FGC C++L + + L KF++++  GIFLGY+  S+AYRVY   T  + E
Sbjct: 1104 FGRRPKVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVE 1162

Query: 1078 SMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAES 1137
            +  V FD+  PG++       +      ED+ + D   D      ++S+P  + T    +
Sbjct: 1163 TCEVTFDEASPGARPEISGVPDESIFVDEDSDDDD---DDSIPPPLDSTPPVQETGSPST 1219

Query: 1138 NSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1197
             S +  +P   + SA+E+    T     P+       P+ +I G  +   R RS+     
Sbjct: 1220 TSPSGDAPTTSS-SAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNS 1278

Query: 1198 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRN 1257
            + +   +  EPK V  ALSD+ W+ AM EEL  F+RN VW LV  P   N+I TKWVF+N
Sbjct: 1279 AFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKN 1335

Query: 1258 KLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDV 1317
            KL E G + RNKARLVAQG++Q EG+++ ETFAPVARLE IR+LL++A + G  L+QMDV
Sbjct: 1336 KLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDV 1395

Query: 1318 KSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDF 1377
            KS FLNGVIEEEVYVKQPPGFE+ K P+HV+KL+K+LYGLKQAPRAWY+RL  FL++N F
Sbjct: 1396 KSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGF 1455

Query: 1378 ERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFF 1437
            E G VD TLF      D L+VQIYVDDIIFG ++ +L  +FS +M  EFEMSMMGEL FF
Sbjct: 1456 EMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFF 1515

Query: 1438 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1497
            LG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM  T +L  ++ G  VDQ+ YR
Sbjct: 1516 LGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYR 1575

Query: 1498 GMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1557
             MIGSLLYLTASRPDI FSVCLCARFQ+ PR SH  AVKRIFRY+K T   G+ Y  S  
Sbjct: 1576 SMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSA 1635

Query: 1558 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
              +  F DAD+AG +I+RKSTSG C FLG +L+S
Sbjct: 1636 LSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVS 1669



 Score =  119 bits (297), Expect = 1e-24
 Identities = 157/684 (22%), Positives = 267/684 (38%), Gaps = 84/684 (12%)

Query: 31  APKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV---DDLDLDEEGAAIDRRIHTPA 87
           A  F  D   F  WK  M +++      +W+ ++      DD D+            TPA
Sbjct: 7   AKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDADI------------TPA 54

Query: 88  QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVH 147
                  +++ R  I+  I   E+ ++    +A  M+ +LC   EG+ +++  +      
Sbjct: 55  NMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHK 114

Query: 148 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIE 206
           +Y+ F M   ESI+  + RF  ++S L+ + K +  +D+   +L  L    W  KVT+I 
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174

Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 266
           E+  L+ L+++ L S LK HEM +   +  K S ++     G TS +  A+        +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234

Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 326
               ++E       +  + L   ARK  +        K  K  +   CF C +P H   +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291

Query: 327 CPDLQKEKFKGKSKKSSFNSSKFRKQIKK----SLMATWEDLD-SESGSDKEEADDDAKA 381
           CP L+K+  K  +KK      K +K + K     ++A  E++  S+  SD ++ +   K 
Sbjct: 292 CPKLKKKSDK-TTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKD 350

Query: 382 AMGLVATVSSE--------AVSEAESDSEDENEVYSKIPRQELVDSLKELLSLFEHRTNE 433
             G+    ++E        A+ + +  SE        IP      SL   L       N+
Sbjct: 351 FSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIP------SLDGSLCDDSCSDND 404

Query: 434 LTD---LKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKG 490
             D    KE+   LM +        K   E+LK  N        RL+S+  + ++ C   
Sbjct: 405 SVDDELSKERMAHLMIEISDKYRSSKYKIEKLKSENDGMALEIARLRSMIPE-EDTCSTC 463

Query: 491 SGNKHEI-ALDDFIMA---GIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCI 546
           +    EI  L D + +   G      AS   ST       +G  E + KE          
Sbjct: 464 ASYLSEINLLKDKLKSCALGAGNPSSASAACSTCYEMKVDMGLLEMELKE---------- 513

Query: 547 KDGLKSTFVPEGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRS 606
              LK  FV +    +   ++ P  +    ++  +   LK    TK+D     ++     
Sbjct: 514 ---LKEKFVHD---RIGRCENCPILTSDNDELRQQVAMLK----TKND----LLESFATK 559

Query: 607 EPVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREK 666
           EP+H +         + KD          KT+   +K     D     I  KV L + +K
Sbjct: 560 EPIHSSCANCAILETELKD---------AKTVIDSIKS---IDSCSSCISLKVDLESAKK 607

Query: 667 QRSWYLDSGCSRHMTGEKALFLTL 690
           + S YL     R   G+K L + L
Sbjct: 608 ENS-YLQQSLERFAQGKKKLNMIL 630


>ref|NP_909107.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 1410

 Score =  863 bits (2230), Expect = 0.0
 Identities = 474/1029 (46%), Positives = 635/1029 (61%), Gaps = 20/1029 (1%)

Query: 569  PEASGSQAKITSKPENLKIKVMTKSDPKSQKI-KILKRSEPVHQNLIKPESKIPKQ--KD 625
            P+      K T KPE    K   K+D   + I K+L   E V  + I  +    ++  KD
Sbjct: 270  PKLKKKSDKTTKKPEGQGRK--GKNDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKD 327

Query: 626  QKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKA 685
                   A+ +     +    L D+   S HP+     R    SW +DSGCSRHMTGE  
Sbjct: 328  FSGMCCLANNEDFIN-LCLMALEDKDDSSEHPEDFGVGRSN--SWLVDSGCSRHMTGEAK 384

Query: 686  LFLTLTMKDGGE-VKFGGNQTGKIIGTGTIG-NSSISINNVWLVDGLKHNLLSISQFCDN 743
             F +LT   G E + FG   +G+++  GTI  N    + +V LV  LK+NLLS+SQ CD 
Sbjct: 385  WFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKDVALVSKLKYNLLSVSQLCDE 444

Query: 744  EYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLL-SMNDKKWVWHK 802
              +V F K    +++  +  + F   RV  V+  NF   A     CL+ S N   + WH+
Sbjct: 445  NLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSAPGPSRCLVASENRDLFFWHR 503

Query: 803  RLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLEL 862
            RLGH  +  +S+IS + L++GLP +    D +C  C+ GK+  SS K   +V T  P +L
Sbjct: 504  RLGHIGFDHLSRISGMDLIRGLPKLKAPKDLVCAPCRHGKMTSSSHKPVTMVMTDGPGQL 563

Query: 863  LHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELK 922
            LH++  GP    S+ G  Y LV+VDD+SR++WV F++SK+     F S    +  E    
Sbjct: 564  LHMNTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKEETFGFFQSLARSLALEFPGA 623

Query: 923  ILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHEN 982
            +  +RSD+G EF+N  FE FC+  G+ H+FSSP  PQQNGVVERKNRTL EMARTM+ E 
Sbjct: 624  LRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNGVVERKNRTLVEMARTMLDEF 683

Query: 983  NLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDY 1042
               + FW EA++ +C+I NR+++R +L KT YEL  GRRP +S+   FGC C++L + + 
Sbjct: 684  TTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRPKVSHLRVFGCKCFVLKSGN- 742

Query: 1043 LKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGT 1102
            L KF++++  GIFLGY+  S+AYRVY   T  + E+  V FD+  PG++       +   
Sbjct: 743  LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVTFDEASPGARPEISGVLDESI 802

Query: 1103 TDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNESASEDFQDNTQQ 1162
               ED+ + D   D      ++S+P  + T    + S +  +P   + SA+E+    T  
Sbjct: 803  FVDEDSDDDD---DDSIPPPLDSTPPVQETGSPSTTSPSGDAPTTSS-SAAEEIDGGTSG 858

Query: 1163 VIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWIL 1222
               P+       P+ +I G  +   R RS+     + +   +  EPK V  ALSD+ W+ 
Sbjct: 859  PTAPRHIQNRHPPDSMIGGLGERVTRNRSYDLVNSAFV---ASFEPKNVCHALSDENWVN 915

Query: 1223 AMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEG 1282
            AM EEL  F+RN VW LV  P   N+I TKWVF+NKL E G + RNKARLVAQG++Q EG
Sbjct: 916  AMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGEDGSIVRNKARLVAQGFTQVEG 975

Query: 1283 INYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLK 1342
            +++ ETFAPVARLE IR+LL++A + G  L+QMDVKS FLNGVIEEEVYVKQPPGFE+ K
Sbjct: 976  LDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFLNGVIEEEVYVKQPPGFENPK 1035

Query: 1343 HPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYV 1402
             P+HV+KL K+LYGLKQAPRAWY+RL  FL++N FE G VD TLF      D L+VQIYV
Sbjct: 1036 FPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNGFEMGAVDKTLFTLHSGIDFLLVQIYV 1095

Query: 1403 DDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLK 1462
            DDIIFG ++ +L  +FS +M  EFEMSMMGEL FFLG+QI Q+KEG++VHQTKY+KELLK
Sbjct: 1096 DDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQIKQTKEGIFVHQTKYSKELLK 1155

Query: 1463 KFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCAR 1522
            KF + DCK + TPM  T +L  ++ G  VDQ+ YR MIGSLLYLTASRPDI FSVCLCAR
Sbjct: 1156 KFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGSLLYLTASRPDIHFSVCLCAR 1215

Query: 1523 FQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNC 1582
            FQ+ PR SH  AVKRIFRY+K T   G+ Y  S    +  F DAD+AG +I+RKSTSG C
Sbjct: 1216 FQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSSALSVRAFSDADFAGCKIDRKSTSGTC 1275

Query: 1583 QFLGENLIS 1591
             FLG +L+S
Sbjct: 1276 HFLGTSLVS 1284



 Score =  111 bits (277), Expect = 2e-22
 Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 16/333 (4%)

Query: 85  TPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALM 144
           TPA       +++ R  I+  I   E+ ++    +A  M+ +LC   EG+ +++  +   
Sbjct: 29  TPANMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQ 88

Query: 145 LVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVT 203
              +Y+ F M   ESI+  + RF  +VS L+ + K +  +D+   +L  L    W  KVT
Sbjct: 89  FHKEYQRFEMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVT 148

Query: 204 AIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESE 263
           +I E+  L+ L+++ L S LK HEM +   +  K S ++     G TS +  A+      
Sbjct: 149 SITESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFS 208

Query: 264 EESPDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHF 323
             +    ++E       +  + L   ARK  +      + K  K  +   CF C +P H 
Sbjct: 209 LAALHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRNKKRGKTNEPFVCFECGEPNHI 265

Query: 324 IADCPDLQK------EKFKGKSKKSSFNSSKFRKQIKKSLMATWEDLDSESGSDKEEADD 377
             +CP L+K      +K +G+ +K    +   +K I K L A  E   S+  SD ++ + 
Sbjct: 266 RVNCPKLKKKSDKTTKKPEGQGRKG--KNDLMKKAIHKVLAALEEVQLSDIDSDDDDQEK 323

Query: 378 DAKAAMGLVATVSSEAVSE----AESDSEDENE 406
             K   G+    ++E        A  D +D +E
Sbjct: 324 GDKDFSGMCCLANNEDFINLCLMALEDKDDSSE 356


>gb|AAN60494.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)] gi|34902378|ref|NP_912535.1| Putative
            Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
            cultivar-group)]
          Length = 2145

 Score =  863 bits (2229), Expect = 0.0
 Identities = 463/994 (46%), Positives = 619/994 (61%), Gaps = 29/994 (2%)

Query: 618  SKIPKQKDQKNKAATASEKTI-------PKGVKPKVLNDQ-KPLSIHPKVCLRARE---- 665
            S  PK  + K    T+  K +       PK V+ K    Q KP+      C    +    
Sbjct: 685  SSTPKTSEPKMVPMTSKSKPVELPRPKNPKQVEHKQNQRQTKPVEKTKYECTYCGKAGHL 744

Query: 666  -----KQRSWYLDSGCSRHMTGEKALFLTLTMKDGGE-VKFGGNQTGKIIGTGTIG-NSS 718
                 +  SW +DSGCSRHMTGE   F +LT     E + FG   +G+++  GTI  N  
Sbjct: 745  DFGVGRSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDK 804

Query: 719  ISINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKIN 778
              + +V LV  LK+NLLS+SQ CD   +V F K    +++  +  + F   RV  V+  N
Sbjct: 805  FMLKDVALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFAN 863

Query: 779  FSDLADQKVVCLL-SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGA 837
            F   A     CL+ S N   + WH+RLGH  +  +S+IS + L++GLP +    D +C  
Sbjct: 864  FDSSAPGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAP 923

Query: 838  CQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKF 897
            C+ GK+  SS K   +V T  P +LLH+D  GP    S+ G  Y LV+VDD+SR++WV F
Sbjct: 924  CRHGKMTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYF 983

Query: 898  IKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRT 957
            ++SK+     F S    +  E    +  +RSD+G EF+N  FE FC+  G+ H+FSSP  
Sbjct: 984  LESKEETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYV 1043

Query: 958  PQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELF 1017
            PQQNGVVERKNRTL EMARTM+ E    + FW EA++ +C+I NR+++R +L KT YEL 
Sbjct: 1044 PQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELR 1103

Query: 1018 KGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEE 1077
             GRRP +S+   FGC C++L + + L KF++++  GIFLGY+  S+AYRVY   T  + E
Sbjct: 1104 FGRRPKVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVE 1162

Query: 1078 SMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAES 1137
            +  V FD+  PG++       +      ED+ + D   D      ++S+P  + T    +
Sbjct: 1163 TCEVTFDEASPGARPEISGVPDESIFVDEDSDDDD---DDSIPPPLDSTPPVQETGSPST 1219

Query: 1138 NSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEE 1197
             S +  +P   + SA+E+    T     P+       P+ +I G  +   R RS+     
Sbjct: 1220 TSPSGDAPTTSS-SAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNS 1278

Query: 1198 SLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRN 1257
            + +   +  EPK V  ALSD+ W+ AM EEL  F+RN VW LV  P   N+I TKWVF+N
Sbjct: 1279 AFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKN 1335

Query: 1258 KLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDV 1317
            KL E G + RNKARLVAQG++Q EG+++ ETFAPVARLE IR+LL++A + G  L+QMDV
Sbjct: 1336 KLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDV 1395

Query: 1318 KSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDF 1377
            KS FLNGVIEEEVYVKQPPGFE+ K P+HV+KL+K+LYGLKQAPRAWY+RL  FL++N F
Sbjct: 1396 KSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGF 1455

Query: 1378 ERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFF 1437
            E G VD TLF      D L+VQIYVDDIIFG ++ +L  +FS +M  EFEMSMMGEL FF
Sbjct: 1456 EMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFF 1515

Query: 1438 LGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYR 1497
            LG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM  T +L  ++ G  VDQ+ YR
Sbjct: 1516 LGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYR 1575

Query: 1498 GMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLD 1557
             MIGSLLYLTASRPDI FSVCLCARFQ+ PR SH  AVKR+FRY+K T   G+ Y  S  
Sbjct: 1576 SMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSA 1635

Query: 1558 YKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
              +  F DAD+AG +I+RKSTSG C FLG +L+S
Sbjct: 1636 LSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVS 1669



 Score =  118 bits (295), Expect = 2e-24
 Identities = 114/498 (22%), Positives = 209/498 (41%), Gaps = 53/498 (10%)

Query: 31  APKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV---DDLDLDEEGAAIDRRIHTPA 87
           A  F  D   F  WK  M +++      +W+ ++      DD D+            TPA
Sbjct: 7   AKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDADI------------TPA 54

Query: 88  QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVH 147
                  +++ R  I+  I   E+ ++    +A  M+ +LC   EG+ +++  +      
Sbjct: 55  NMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHK 114

Query: 148 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIE 206
           +Y+ F M   ESI+  + RF  ++S L+ + K +  +D+   +L  L    W  KVT+I 
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174

Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 266
           E+  L+ L+++ L S LK HEM +   +  K S ++     G TS +  A+        +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234

Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 326
               ++E       +  + L   ARK  +        K  K  +   CF C +P H   +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291

Query: 327 CPDLQKEKFKGKSKKSSFNSSKFRKQIKK----SLMATWEDLD-SESGSDKEEADDDAKA 381
           CP L+K+  K  +KK      K +K + K     ++A  E++  S+  SD ++ +   K 
Sbjct: 292 CPKLKKKSDK-TTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKD 350

Query: 382 AMGLVATVSSE--------AVSEAESDSEDENEVYSKIPRQELV---------DSLKELL 424
             G+    ++E        A+ + +  SE        IP  +           DS+ + L
Sbjct: 351 FSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSCSDNDSVDDEL 410

Query: 425 SLFEHRTNELTDLKEKY------VDLMKQQKSTL-LELKASEEELKGFNLIST--TYEDR 475
           S  E   + + ++ +KY      ++ +K +   + LE+      +   +  ST  +Y   
Sbjct: 411 SK-ERMAHLMIEISDKYRSSKYKIEKLKSENDGMALEIARLRSMIPEEDTCSTCASYLSE 469

Query: 476 LKSLCQKLQEKCDKGSGN 493
           +  L  KL + C  G+GN
Sbjct: 470 INLLKDKL-KSCALGAGN 486


>ref|XP_474304.1| OSJNBb0004A17.2 [Oryza sativa (japonica cultivar-group)]
            gi|32488723|emb|CAE03600.1| OSJNBb0004A17.2 [Oryza sativa
            (japonica cultivar-group)]
          Length = 1877

 Score =  862 bits (2228), Expect = 0.0
 Identities = 449/929 (48%), Positives = 599/929 (64%), Gaps = 12/929 (1%)

Query: 666  KQRSWYLDSGCSRHMTGEKALFLTLTMKDGGE-VKFGGNQTGKIIGTGTIG-NSSISINN 723
            +  SW +DSGCSRHMTGE   F +LT     E + FG   +G+++  GTI  N    + +
Sbjct: 832  RSNSWLVDSGCSRHMTGEAKWFTSLTRASSDETITFGDASSGRVMAKGTIKVNDKFMLKD 891

Query: 724  VWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLA 783
            V LV  LK+NLLS+SQ CD   +V F K    +++  +  + F   RV  V+  NF   A
Sbjct: 892  VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 950

Query: 784  DQKVVCLL-SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGK 842
                 CL+ S N   + WH+RLGH  +  +S+IS + L++GLP +    D +C  C+ GK
Sbjct: 951  PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 1010

Query: 843  IVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 902
            +  SS K   +V T  P +LLH+D  GP    S+ G  Y LV+VDD+SR++WV F++SK+
Sbjct: 1011 MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWYVLVVVDDFSRYSWVYFLESKE 1070

Query: 903  YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 962
                 F S    +  E    +  +RSD+G EF+N  FE FC+  G+ H+FSSP  PQQNG
Sbjct: 1071 ETFGFFQSLARSLALEFPGALRAIRSDNGSEFKNSAFESFCDSSGVEHQFSSPYVPQQNG 1130

Query: 963  VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRP 1022
            VVERKNRTL EMARTM+ E    + FW EA++ +C+I NR+++R +L KT YEL  GRRP
Sbjct: 1131 VVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYELRFGRRP 1190

Query: 1023 NISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVK 1082
             +S+   FGC C++L + + L KF++++  GIFLGY+  S+AYRVY   T  + E+  V 
Sbjct: 1191 KVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIVETCEVT 1249

Query: 1083 FDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAE 1142
            FD+  PG++       +      ED+ + D   D      ++S+P  + T    + S + 
Sbjct: 1250 FDEASPGARPEISGVPDESIFVDEDSDDDD---DDSIPPPLDSTPPVQETGSPSTTSPSG 1306

Query: 1143 SSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGL 1202
             +P   + SA+E+    T     P+       P+ +I G  +   R RS+     + +  
Sbjct: 1307 DAPTTSS-SAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVNSAFV-- 1363

Query: 1203 LSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQ 1262
             +  EPK V  ALSD+ W+ AM EEL  F+RN VW LV  P   N+I TKWVF+NKL E 
Sbjct: 1364 -ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFNVIGTKWVFKNKLGED 1422

Query: 1263 GEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFL 1322
            G + RNKARLVAQG++Q EG+++ ETFAPVARLE IR+LL++A + G  L+QMDVKS FL
Sbjct: 1423 GSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMDVKSAFL 1482

Query: 1323 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQV 1382
            NGVIEEEVYVKQPPGFE+ K P+HV+KL+K+LYGLKQAPRAWY+RL  FL++N FE G V
Sbjct: 1483 NGVIEEEVYVKQPPGFENPKFPNHVFKLEKALYGLKQAPRAWYERLKTFLLQNGFEMGAV 1542

Query: 1383 DTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQI 1442
            D TLF      D L+VQIYVDDIIFG ++ +L  +FS +M  EFEMSMMGEL FFLG+QI
Sbjct: 1543 DKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFSDVMSREFEMSMMGELTFFLGLQI 1602

Query: 1443 NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGS 1502
             Q+KEG++VHQTKY+KELLKKF + DCK + TPM  T +L  ++ G  VDQ+ YR MIGS
Sbjct: 1603 KQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREYRSMIGS 1662

Query: 1503 LLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIG 1562
            LLYLTASRPDI FSVCLCARFQ+ PR SH  AVKR+FRY+K T   G+ Y  S    +  
Sbjct: 1663 LLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRMFRYIKSTLEYGIWYSCSSALSVRA 1722

Query: 1563 FCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            F DAD+AG +I+RKSTSG C FLG +L+S
Sbjct: 1723 FSDADFAGCKIDRKSTSGTCHFLGTSLVS 1751



 Score =  118 bits (295), Expect = 2e-24
 Identities = 114/498 (22%), Positives = 209/498 (41%), Gaps = 53/498 (10%)

Query: 31  APKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGV---DDLDLDEEGAAIDRRIHTPA 87
           A  F  D   F  WK  M +++      +W+ ++      DD D+            TPA
Sbjct: 7   AKPFVFDGHNFVIWKARMEAYLQSQGHNVWNKVKSPYTVPDDADI------------TPA 54

Query: 88  QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVH 147
                  +++ R  I+  I   E+ ++    +A  M+ +LC   EG+ +++  +      
Sbjct: 55  NMAQVDFNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQLVRQNQFHK 114

Query: 148 QYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIE 206
           +Y+ F M   ESI+  + RF  ++S L+ + K +  +D+   +L  L    W  KVT+I 
Sbjct: 115 EYQRFEMHPGESIDSYFKRFGEIISKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSIT 174

Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEES 266
           E+  L+ L+++ L S LK HEM +   +  K S ++     G TS +  A+        +
Sbjct: 175 ESAPLSDLTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVYGGFSLAA 234

Query: 267 PDGDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIAD 326
               ++E       +  + L   ARK  +        K  K  +   CF C +P H   +
Sbjct: 235 LHSVTEEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHKRVN 291

Query: 327 CPDLQKEKFKGKSKKSSFNSSKFRKQIKK----SLMATWEDLD-SESGSDKEEADDDAKA 381
           CP L+K+  K  +KK      K +K + K     ++A  E++  S+  SD ++ +   K 
Sbjct: 292 CPKLKKKSDK-TTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKD 350

Query: 382 AMGLVATVSSE--------AVSEAESDSEDENEVYSKIPRQELV---------DSLKELL 424
             G+    ++E        A+ + +  SE        IP  +           DS+ + L
Sbjct: 351 FSGMCCLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDDSCSDNDSVDDEL 410

Query: 425 SLFEHRTNELTDLKEKY------VDLMKQQKSTL-LELKASEEELKGFNLIST--TYEDR 475
           S  E   + + ++ +KY      ++ +K +   + LE+      +   +  ST  +Y   
Sbjct: 411 SK-ERMAHLMIEISDKYRSSKYKIEKLKSENDGMALEIARLRSMIPEEDTCSTCASYLSE 469

Query: 476 LKSLCQKLQEKCDKGSGN 493
           +  L  KL + C  G+GN
Sbjct: 470 INLLKDKL-KSCALGAGN 486


>gb|AAN40025.1| putative gag-pol polyprotein [Zea mays]
          Length = 1892

 Score =  847 bits (2189), Expect = 0.0
 Identities = 456/953 (47%), Positives = 594/953 (61%), Gaps = 80/953 (8%)

Query: 669  SWYLDSGCSRHMTGEKALFLTLTMKDGGE--VKFGGNQTGKIIGTGTIGNSSISINNVWL 726
            SW LDSGC+ HMTGEK +F +       +  + FG    G + G                
Sbjct: 863  SWILDSGCTNHMTGEKKMFSSYEKNKDPQRAITFGDGNQGLVKGV--------------- 907

Query: 727  VDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQK 786
                                        T+  + D SI FKG     +Y + F D A+  
Sbjct: 908  ----------------------------TVFRRSDDSIAFKGVLEGQLYLVVF-DRAELD 938

Query: 787  VVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKS 846
              CL++  +  W+WH+RL H   + + K+ K + + GL N+ +  D +C ACQ GK V +
Sbjct: 939  T-CLIAKTNMGWLWHRRLAHVGMKNLHKLLKGEHILGLTNVHFEKDRICSACQAGKQVGT 997

Query: 847  SFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACE 906
                K+I++T RPLELLH+DLFGP+   S+ GSKY LVIVDDYSR+TWV F++ K    E
Sbjct: 998  HHPHKNIMTTDRPLELLHMDLFGPIAYISIGGSKYCLVIVDDYSRFTWVFFLQEKSQTQE 1057

Query: 907  VFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 966
                F  + Q+E  L+I K+RSD+G EF+N   E F E+ GI HEFSSP TPQQNGVVER
Sbjct: 1058 TLKGFLRRAQNEFGLRIKKIRSDNGTEFKNSQIESFLEEEGIKHEFSSPYTPQQNGVVER 1117

Query: 967  KNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISY 1026
            KNRTL +MARTM+ E      FWAEAVNT+CY  NR+Y+  +L+KT+YEL  G++PNISY
Sbjct: 1118 KNRTLLDMARTMLDEYKTPDRFWAEAVNTACYAINRLYLHRILKKTSYELLTGKKPNISY 1177

Query: 1027 FHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDR 1086
            F  FG  C+IL  +    KF  K   G  LGY   ++AYRV+N  T  VE S  V FD+ 
Sbjct: 1178 FRVFGSKCFILIKRGRKSKFAPKTVEGFLLGYDSNTRAYRVFNKSTGLVEVSCDVVFDET 1237

Query: 1087 EPGSKTSEQSESNAGTTDSEDAS------------ESDQPSDSEKY--TKVESSPEAEIT 1132
              GS+  +      G   +   +            ES++P  ++    + +++SP  +  
Sbjct: 1238 N-GSQVEQVDLDEIGEEQAPCIALRNMSIGDVCPKESEEPPSTQDQPPSSMQASPPTQNE 1296

Query: 1133 PEA----ESNSEAESSPIVQNESASEDFQDNTQQVIQPKFKH-------KSSHPEELIIG 1181
             EA    E N E +      N+   +      +   +P+  H       +  HP + I+G
Sbjct: 1297 DEAQNDEEQNQEVKPPQDKSNDQGGDTNDQEKEDEEEPRPPHPRVHQAIQRDHPVDTILG 1356

Query: 1182 SKDSPRRTRS---HFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWD 1238
                   TRS   HF +  S +   S IEP  VEEAL D  W++AMQEELN F RN+VW 
Sbjct: 1357 DIHKGVTTRSRVAHFCEHYSFV---SSIEPHRVEEALQDSDWVVAMQEELNNFTRNEVWH 1413

Query: 1239 LVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETI 1298
            LVP+P Q N++ TKWVFRNK +E G VTRNKARLVA+GYSQ EG+++ ET+APVARLE+I
Sbjct: 1414 LVPRPNQ-NVVGTKWVFRNKQDEHGVVTRNKARLVAKGYSQVEGLDFDETYAPVARLESI 1472

Query: 1299 RLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLK 1358
            R+LL+YA  HG  LYQMDVKS FLNG I+EEVYV+QPPGFED ++P+HVY+L K+LYGLK
Sbjct: 1473 RILLAYATYHGFKLYQMDVKSAFLNGPIKEEVYVEQPPGFEDSEYPNHVYRLSKALYGLK 1532

Query: 1359 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEF 1418
            QAPRAWY+ L +FLI N F+ G+ D TLF +TL+ D+ + QIYVDDIIFGSTN S C+EF
Sbjct: 1533 QAPRAWYECLRDFLIANGFKVGKADPTLFTKTLENDLFVCQIYVDDIIFGSTNESTCEEF 1592

Query: 1419 SKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP 1478
            S++M  +FEMSMMGELK+FLG Q+ Q +EG ++ QTKYT+++L KF ++D K + TPM  
Sbjct: 1593 SRIMTQKFEMSMMGELKYFLGFQVKQLREGTFISQTKYTQDILAKFGMKDAKPIKTPMGT 1652

Query: 1479 TCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRI 1538
               L  +  G  VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQSDP+ESHLTAVKRI
Sbjct: 1653 NGHLDLDTGGKSVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQSDPKESHLTAVKRI 1712

Query: 1539 FRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
             RYL  T   GL Y +   + LIG+ DAD+AG +I RKSTSG CQFLG +L+S
Sbjct: 1713 LRYLAYTPKFGLWYPRGSTFDLIGYSDADWAGCKINRKSTSGTCQFLGRSLVS 1765



 Score =  115 bits (287), Expect = 2e-23
 Identities = 123/484 (25%), Positives = 209/484 (42%), Gaps = 59/484 (12%)

Query: 4   DEESVTTK------YTSVKHDYDTADKKTDS-----GKAPKFNGDPEEFSWWKTNMYSFI 52
           D  SVT+K      Y+ +   Y    K T       GK P FNG  E+++ W   M   +
Sbjct: 95  DAASVTSKRQERKKYSKIPLRYPRVPKHTPLLSVPLGKPPTFNG--EDYAMWSNLMRFHL 152

Query: 53  MGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYM 112
             L + +WD++E GV    + +E    D         ++   + +   I++AS+ + EY 
Sbjct: 153 TSLHKRIWDVVEYGVQVPSIGDEDYDTDE------VAQIEHFNSQAATILLASLSKEEYN 206

Query: 113 KMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVS 172
           K+     AK ++  L    EG +  K  K   +  +   F ++  E  ++MY+R +TLV+
Sbjct: 207 KVQGLKNAKEIWDLLKTAHEGDELTKITKRETIEGELGRFHLRQGEEPQDMYNRLKTLVN 266

Query: 173 GLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLN 231
            ++ L  +      V K ILR+L      +V  I        ++ E+++ +    E  + 
Sbjct: 267 QVRNLGSTKWDDHEVVKVILRALIFLNPTQVQLIRGNPRYPLMTPEEVIGNFVSFECMI- 325

Query: 232 EHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLAR 291
             + SKK   +  PS  +      A+KA+E ++E     +   Q +  + L N+   L  
Sbjct: 326 --KGSKKINELDEPSTSEAQPV--AFKATEEKKEE---STPSRQPIDASKLDNEEMALII 378

Query: 292 KQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNSSKFRK 351
           K  + + K+   K+ K   +K C+ C KPGHFIA CP +  +  +G  KK      K   
Sbjct: 379 KSFRQILKQRKGKDYKPRSKKVCYKCGKPGHFIAKCP-MSSDSDRGDDKKGRRKEKKRYY 437

Query: 352 QIKKSLMATWEDLDS-ESGSDKEEADDDAKAAM--GLV-----------------ATVSS 391
           + K        + DS ES SD  + +D A  A+  GL+                     S
Sbjct: 438 KKKGGDAHVCREWDSDESSSDSSDDEDAANIAVTKGLLFPNVGHKCLMAKDGKKKVKSKS 497

Query: 392 EAVSEAESDSEDENE------VYSKIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLM 445
               E  SD +D+NE      +++ +   E  + L EL+S   H  ++L D +E +  L+
Sbjct: 498 STKYETSSDEDDKNEEDNLRILFANL-NMEQKEKLNELISAI-HEKDDLLDSQEDF--LI 553

Query: 446 KQQK 449
           K+ K
Sbjct: 554 KENK 557


>gb|AAL35396.1| Opie2a pol [Zea mays]
          Length = 1048

 Score =  841 bits (2172), Expect = 0.0
 Identities = 446/931 (47%), Positives = 593/931 (62%), Gaps = 28/931 (3%)

Query: 680  MTGEKALFLTLTMKDGGE--VKFGGNQTGKIIGTGTIGNSSI-SINNVWLVDGLKHNLLS 736
            MTGEK +F +       +  + FG    GK+ G G I  SS  SI+NV+LV+ L +N LS
Sbjct: 1    MTGEKKMFTSYVKNKDSQDSIIFGDGNQGKVKGLGKIAISSEHSISNVFLVESLGYNFLS 60

Query: 737  ISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDK 796
            +SQ C+  Y+  F+  + ++  + D S+ FKG     +Y ++F+        CL++    
Sbjct: 61   VSQLCNMGYNCLFTNVDVSVFRRSDGSLAFKGVLDGKLYLVDFAKEEAGLDACLIAKTSM 120

Query: 797  KWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVST 856
             W+WH+RL H   + + K+ K + V GL N+ +  D  C ACQ GK V+ S  +K++++T
Sbjct: 121  GWLWHRRLAHVGMKNLHKLLKGEHVIGLTNVQFKKDRPCVACQAGKQVRGSHHTKNVMTT 180

Query: 857  SRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQ 916
            SRPLE+LH+DLFGPV   S+ GSKYGLVIVDD+SR+TWV F++ K         +  + Q
Sbjct: 181  SRPLEMLHMDLFGPVAYLSIGGSKYGLVIVDDFSRFTWVFFLQDKSETQGTLKRYLRRAQ 240

Query: 917  SEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMAR 976
            +E ELK+ K+RSD+G EF+N   E F  + GI HEFS+P TPQQNGVVERKNRTL +MAR
Sbjct: 241  NEFELKVKKIRSDNGSEFKNLQVEEFLVEEGIKHEFSAPYTPQQNGVVERKNRTLMDMAR 300

Query: 977  TMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYI 1036
            TM+ E    + FW+EAVNT+C+  NR+Y+  +L+ T+YEL  G +PN+SYF  FG  CYI
Sbjct: 301  TMLGEFKTPERFWSEAVNTACHSINRVYLHRLLKNTSYELLTGNKPNVSYFRVFGSKCYI 360

Query: 1037 LNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQS 1096
            L  K    KF  KA  G  LGY   +KAYRV+N  +  VE S  V FD  E      EQ 
Sbjct: 361  LVKKGRTSKFAPKAVEGFLLGYDSNTKAYRVFNKSSGLVEVSSDVVFD--ETNGSLREQ- 417

Query: 1097 ESNAGTTDSEDASESDQPSDSEKYTKV-ESSPEAEITPEAESNSEAESSPIVQNESA--- 1152
                   + +D  E D P+ + +   + +  P+  +  +  S++     P   +E A   
Sbjct: 418  -----VVNLDDVDEEDVPTAAMRTMAIGDVRPQEHLEQDQPSSTTMVHPPTQDDEQAPQV 472

Query: 1153 -------SEDFQDNTQQV-----IQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLI 1200
                   ++D Q   ++       Q +   + +HP   I+G       TRS         
Sbjct: 473  GAHDQGGAQDVQVEEEEAPQAPPTQVRATIQRNHPVNQILGDISKGVTTRSRLVNFCEHY 532

Query: 1201 GLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLN 1260
              +S IEP  VEE L D  W+LAMQEELN F+RN+VW LVP+P Q N++ TKWVFRNK +
Sbjct: 533  SFVSSIEPFRVEEVLLDPDWVLAMQEELNNFKRNEVWTLVPRPKQ-NVVGTKWVFRNKQD 591

Query: 1261 EQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSV 1320
            E G VTRNKARLVA+GY+Q  G+++ ETFAPVARL++IR+ L+YA +H   LYQMDVKS 
Sbjct: 592  EHGVVTRNKARLVAKGYAQVAGLDFEETFAPVARLKSIRIWLAYAAHHSFRLYQMDVKSA 651

Query: 1321 FLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERG 1380
            FLNG I+EEVYV+QPPGFED + PDHV KL K+LYGLKQAPRAWY+ L +FLI N F+ G
Sbjct: 652  FLNGPIKEEVYVEQPPGFEDERFPDHVCKLSKALYGLKQAPRAWYECLRDFLIANAFKVG 711

Query: 1381 QVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGI 1440
            + D TLF +T   D+ + QIYVDDIIFGSTN + C+EFS++M  +FEMSMMGEL +FLG 
Sbjct: 712  KADPTLFTKTCDGDLFVCQIYVDDIIFGSTNQNSCEEFSRVMTQKFEMSMMGELSYFLGF 771

Query: 1441 QINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMI 1500
            Q+ Q K+G ++ QTKYT++L+K+F ++D K   TPM           G  VDQK YR  I
Sbjct: 772  QVRQLKDGTFISQTKYTQDLIKRFGMKDAKPAKTPMGTDGHTDLNKGGKSVDQKAYRSTI 831

Query: 1501 GSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKL 1560
            GSLLYL ASRPDI+ SVC+CARFQSDPRE HL AVKRI RYL  T   G+ Y K   + L
Sbjct: 832  GSLLYLCASRPDIMLSVCMCARFQSDPRECHLVAVKRILRYLVATPCFGIWYPKGSTFDL 891

Query: 1561 IGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            IG+ D+DYA  +++RKSTS  CQFLG +L+S
Sbjct: 892  IGYSDSDYARCKVDRKSTSRMCQFLGRSLVS 922


>emb|CAE04884.2| OSJNBa0042I15.6 [Oryza sativa (japonica cultivar-group)]
          Length = 1510

 Score =  813 bits (2099), Expect = 0.0
 Identities = 445/953 (46%), Positives = 584/953 (60%), Gaps = 73/953 (7%)

Query: 669  SWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSISINNVWLVD 728
            SW +DSGC+ HMTGE+++F +L  K G                        S  N+   D
Sbjct: 470  SWVVDSGCTNHMTGERSMFTSLDEKGG------------------------SRENIVFGD 505

Query: 729  GLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVV 788
              K  L  I +                 + +DD SI FKG    ++Y ++F         
Sbjct: 506  DGKEKLQFIIRVS---------------IVRDDSSIAFKGVLKGDLYLVDFDVDRVNPEA 550

Query: 789  CLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSF 848
            CL++ +   W+WH+RL H   R ++ + K + + GL N+ +  D +C ACQ GK V S  
Sbjct: 551  CLIAKSSMGWLWHRRLAHVGMRNLASLLKGEHILGLSNVSFEMDRVCSACQAGKQVGSPH 610

Query: 849  KSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVF 908
              K+I++T+RPLELLH+DLFGPV   S+ G+KYG VIVDD+S +TWV F+  K  A +VF
Sbjct: 611  PIKNIMTTTRPLELLHMDLFGPVAYISIGGNKYGFVIVDDFSCFTWVYFLHDKSEAQDVF 670

Query: 909  SSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKN 968
              F  Q Q+  +L I +VRSD+GGEF+N   E F ++ GI HEFS+P  P QNG+VERKN
Sbjct: 671  KRFTKQAQNLYDLTIKRVRSDNGGEFKNTQVEEFLDEEGIKHEFSAPYDPPQNGIVERKN 730

Query: 969  RTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFH 1028
            RTL E AR M+ E   +  FWAEAV+T+C+  NR+Y+  +L+KT+YEL  G++PN+SYF 
Sbjct: 731  RTLIEAARAMLDEYKTSDVFWAEAVSTACHAINRLYLHKILKKTSYELLSGKKPNVSYFR 790

Query: 1029 QFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREP 1088
             FG   +IL+      KF  K   G  LGY   + AYRV+N +T   +  +HV   D +P
Sbjct: 791  VFGSKFFILSKMPRSSKFSPKVDEGFLLGYESNAHAYRVFN-KTSGEQVVIHV-VRDVDP 848

Query: 1089 GSKTSEQSESNAGTTDSEDASES-DQP--SDSEKYTKVESSPEAEITPEAESNSEAESSP 1145
                  ++  +    +++D  E  DQP  S S   T V S+ E E+    + N      P
Sbjct: 849  SQAIGTKAIGDIRPVETQDDQEDRDQPPSSTSNSPTSVVSA-EPEVPGPIDRNLRTSPGP 907

Query: 1146 IVQNE-------SASEDF------------------QDNTQQVIQPKFKH--KSSHPEEL 1178
             V          S SED                   Q     V  P+  H  +  HP + 
Sbjct: 908  EVPGSTVRNLRTSGSEDVPTAQVDGIDAAGTLGHTDQAQVPLVHHPRIHHTVQRDHPVDN 967

Query: 1179 IIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWD 1238
            I+G       TRS           +S +EP  VE+AL D  W++AMQEELN F RN VW+
Sbjct: 968  ILGDIRKGVTTRSRVASFCQHYSFVSSLEPTRVEDALGDSDWVMAMQEELNNFARNQVWN 1027

Query: 1239 LVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETI 1298
            LV +P Q N+I TKW+FRNK +E   V RNKARLV QG++Q EG+++ ETFAPVARLE+I
Sbjct: 1028 LVERPKQ-NVIGTKWIFRNKQDEHVVVVRNKARLVTQGFTQVEGLDFGETFAPVARLESI 1086

Query: 1299 RLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLK 1358
            R+LL+YA +H   L+QMDVKS FLNG I E VYV+QPPGFED K P+HVYKL K+LYGLK
Sbjct: 1087 RILLAYAAHHDFRLFQMDVKSAFLNGPISELVYVEQPPGFEDPKLPNHVYKLHKALYGLK 1146

Query: 1359 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEF 1418
            QAPRAWY+ L +FL+KN FE G  DTTLF +  K D+ I QIYVDDIIFGSTNAS C+EF
Sbjct: 1147 QAPRAWYECLRDFLLKNGFEIGNADTTLFTKKFKSDLFICQIYVDDIIFGSTNASFCEEF 1206

Query: 1419 SKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP 1478
            S +M   FEMSMMGEL FFL +Q+ Q++EG ++ QTKY K++LKKF +ED K + TPM  
Sbjct: 1207 SSIMTKRFEMSMMGELTFFLWLQVKQAQEGTFISQTKYVKDILKKFGMEDAKPIKTPMPT 1266

Query: 1479 TCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRI 1538
               L  +D G  VDQK+YR MIGSLLYL ASRPDI+ SVC+CARFQ++P+E HL AVKRI
Sbjct: 1267 NGHLDLDDNGKCVDQKVYRSMIGSLLYLCASRPDIMLSVCMCARFQAEPKECHLIAVKRI 1326

Query: 1539 FRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
             RYL  T NLGL Y K  D++L+G+ D+DYAG +++RKS +G CQFLG +L+S
Sbjct: 1327 QRYLVHTPNLGLWYPKGCDFELLGYSDSDYAGCKVDRKSITGTCQFLGPSLVS 1379



 Score = 96.3 bits (238), Expect = 8e-18
 Identities = 108/436 (24%), Positives = 177/436 (39%), Gaps = 87/436 (19%)

Query: 52  IMGLDEELWDILEDGVD----DLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIP 107
           ++ L   +W ++  GVD    D++L  E            Q++L  ++ +    I++++ 
Sbjct: 5   LISLHPSIWKVVCTGVDVPHDDMELTSE------------QEQLIHRNAQASNAILSTLS 52

Query: 108 RTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEMYSRF 167
             E+ K+     AK +  +L    EGS  V+EAK  +L  +   F M D E+ +EMY R 
Sbjct: 53  LEEFNKVDGLEEAKEICDTLQLAHEGSPAVREAKIELLEGRLGRFVMDDKETPQEMYDRM 112

Query: 168 QTLVSGLQILKKSYVASDHVSK-ILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSLKVH 226
             LV+ ++ L    + +  V K +LR    R    V+ I E KD   L++ D++  +  H
Sbjct: 113 MILVNKIKGLGSEDMTNHFVVKRLLREFGPRNPTLVSMIREKKDFKRLTLSDILGRIVSH 172

Query: 227 EMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKL 286
           EM   E                KT +  K +K    +     G  D+D+           
Sbjct: 173 EMQEEEAR--------------KTRRRVKRFKHFLRKSGYGKGRKDDDK----------- 207

Query: 287 EYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSKKSSFNS 346
                               KK+ ++ CFNC + GHFIAD P   + K KG  KK     
Sbjct: 208 -------------------GKKQSKRACFNCGEYGHFIADFPKSNEAKAKGGKKKPE--- 245

Query: 347 SKFRKQIKKSLM-ATWEDLDSESGSDKEEADDDAKA-AMGLVATVSSEAVSEAE------ 398
              R  + ++ M   W   D E    K +     K    G VATV+ ++ S ++      
Sbjct: 246 ---RAHVAEAHMPEVWYSGDEEDPEVKPKPKPKDKVDGEGGVATVTFKSSSSSKERLFNN 302

Query: 399 -SDSEDENEVYS-------KIPRQELVDSLKELLSLFEHRTNELTDLKEKYVDLMKQQKS 450
            SD +D++  YS       K+  Q+   +  ++ S  E   NEL D+ + +     Q  +
Sbjct: 303 LSDDDDDSYHYSCFMAQGRKVMTQKPSHTSLDVDSSDEESDNELDDVLKSFSKPAMQHLA 362

Query: 451 TLLE----LKASEEEL 462
            L+     LK   E L
Sbjct: 363 KLMRALDTLKKENERL 378


>gb|AAW57789.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
          Length = 1799

 Score =  791 bits (2042), Expect = 0.0
 Identities = 431/935 (46%), Positives = 580/935 (61%), Gaps = 45/935 (4%)

Query: 666  KQRSWYLDSGCSRHMTGEKALFLTLTMKDGGE-VKFGGNQTGKIIGTGTIG-NSSISINN 723
            +  SW +DSGCSRHMTGE   F +LT   G E + FG   +G+++  GTI  N    + +
Sbjct: 775  RSNSWLVDSGCSRHMTGEAKWFTSLTRASGDETITFGDASSGRVMAKGTIKVNDKFMLKD 834

Query: 724  VWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLA 783
            V LV  LK+NLLS+SQ CD   +V F K    +++  +  + F   RV  V+  NF   A
Sbjct: 835  VALVSKLKYNLLSVSQLCDENLEVRFKKDRSRVLDASESPV-FDISRVGRVFFANFDSSA 893

Query: 784  DQKVVCLL-SMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGK 842
                 CL+ S N   + WH+RLGH  +  +S+IS + L++GLP +    D +C  C+ GK
Sbjct: 894  PGPSRCLIASENRDLFFWHRRLGHIGFDHLSRISGMDLIRGLPKLKVPKDLVCAPCRHGK 953

Query: 843  IVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYG------SKYGLVIVDDYSRWTWVK 896
            +  SS K   +V T  P +LLH+D  GP    S+ G      + + L++V     W W  
Sbjct: 954  MTSSSHKPVTMVMTDGPGQLLHMDTVGPARVQSVGGKWRKHLASFSLLLV----VWLWSF 1009

Query: 897  FIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPR 956
             +  + +A  V  +  ++I     L ++ + S+                    H+FSSP 
Sbjct: 1010 LVLFEPFA--VIMALNSKI-LHLNLSVILLESN--------------------HQFSSPY 1046

Query: 957  TPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYEL 1016
             PQQNGVVERKNRTL EMARTM+ E    + FW EA++ +C+I NR+++R +L KT YEL
Sbjct: 1047 VPQQNGVVERKNRTLVEMARTMLDEFTTPRKFWTEAISAACFISNRVFLRTILHKTPYEL 1106

Query: 1017 FKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVE 1076
              GRRP +S+   FGC C++L + + L KF++++  GIFLGY+  S+AYRVY   T  + 
Sbjct: 1107 RFGRRPKVSHLRVFGCKCFVLKSGN-LDKFESRSLDGIFLGYATHSRAYRVYVLSTNKIV 1165

Query: 1077 ESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAE 1136
            E+  V FD+  PG++       +      ED+ + D  S S     ++S+P  + T    
Sbjct: 1166 ETCEVTFDEASPGARPEISGVPDESIFVDEDSDDDDDDSIS---PPLDSTPPVQETGSPL 1222

Query: 1137 SNSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQE 1196
            + S +  +P   + SA+E+    T     P+       P+ +I G  +   R RS+    
Sbjct: 1223 TTSPSGDAP-TTSSSAAEEIDGGTSGPTAPRHIQNRHPPDSMIGGLGERVTRNRSYELVN 1281

Query: 1197 ESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFR 1256
             + +   +  EPK V  ALSD+ W+ AM EEL  F+RN VW LV  P   ++I TKWVF+
Sbjct: 1282 SAFV---ASFEPKNVCHALSDENWVNAMHEELENFERNKVWSLVEPPLGFSVIGTKWVFK 1338

Query: 1257 NKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMD 1316
            NKL E G + RNKARLVAQG++Q EG+++ ETFAPVARLE IR+LL++A + G  L+QMD
Sbjct: 1339 NKLGEDGSIVRNKARLVAQGFTQVEGLDFEETFAPVARLEAIRILLAFAASKGFKLFQMD 1398

Query: 1317 VKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKND 1376
            VKS FLNGVIEEEVYVKQPPGFE+ K P+HV+KL K+LYGLKQAPRAWY+RL  FL++N 
Sbjct: 1399 VKSAFLNGVIEEEVYVKQPPGFENPKFPNHVFKLDKALYGLKQAPRAWYERLKTFLLQNG 1458

Query: 1377 FERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKF 1436
            FE G VD TLF      D L+VQIYVDDIIFG ++ +L  +F  +M  EFEMSMMGEL F
Sbjct: 1459 FEMGAVDKTLFTLHSGIDFLLVQIYVDDIIFGGSSHALVAQFFDVMSREFEMSMMGELTF 1518

Query: 1437 FLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLY 1496
            FLG+QI Q+KEG++VHQTKY+KELLKKF + DCK + TPM  T +L  ++ G  VDQ+ Y
Sbjct: 1519 FLGLQIKQTKEGIFVHQTKYSKELLKKFDMADCKPIATPMATTSSLGPDEDGEEVDQREY 1578

Query: 1497 RGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSL 1556
            R MIGSLLYLTASRPDI FSVCLCARFQ+ PR SH  AVKRIFRY+K T   G+ Y  S 
Sbjct: 1579 RSMIGSLLYLTASRPDIHFSVCLCARFQASPRTSHRQAVKRIFRYIKSTLEYGIWYSCSS 1638

Query: 1557 DYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
               +  F DAD+AG +I+RKSTSG C FLG +L+S
Sbjct: 1639 ALSVRAFSDADFAGCKIDRKSTSGTCHFLGTSLVS 1673



 Score =  115 bits (289), Expect = 9e-24
 Identities = 157/678 (23%), Positives = 270/678 (39%), Gaps = 87/678 (12%)

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWDILEDGV---DDLDLDEEGAAIDRRIHTPAQKKLYK 93
           D   F  WK  M +++      +W+ ++      DD+D+            TPA      
Sbjct: 13  DGHNFVIWKARMEAYLPSQGHNVWNKVKSPYTVPDDVDI------------TPANMAQVD 60

Query: 94  KHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVH-QYELF 152
            +++ R  I+  I   E+ ++    +A  M+ +LC   EG+ +++    L   H +Y+ F
Sbjct: 61  FNYRARNAIIGGISSGEFNRVQHHKSAHDMWTALCNFHEGNNDIQ----LNQFHKEYQRF 116

Query: 153 RMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDL 211
            M   ESI+  + RF  +VS L+ + K +  +D+   +L  L    W  KVT+I E+  L
Sbjct: 117 EMHPGESIDSYFKRFGEIVSKLRSVGKEFSDNDNARHLLNCLDYGVWEMKVTSITESAPL 176

Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
           + L+++ L S LK HEM +   +  K S ++     G TS +  A+        +    +
Sbjct: 177 SELTMDKLYSKLKTHEMDVFHRKGLKHSMALVADPSGSTSSNDSAFVCGGFSLAALHSVT 236

Query: 272 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQ 331
           +E       +  + L   ARK  +        K  K  +   CF C +P H   +CP L+
Sbjct: 237 EEQLE---KIPEDDLALFARKFSRAYKNVRDRKRGKTNEPFVCFECGEPNHIRVNCPKLK 293

Query: 332 KEKFKGKSKKSSFNSSKFRKQIKK----SLMATWEDLD-SESGSDKEEADDDAKAAMGLV 386
           K+  K  +KK      K +K + K     ++A  E++  S+  SD ++ +   K   G+ 
Sbjct: 294 KKSDK-TTKKPEGQGRKGKKDLMKKAIHKVLAALEEVQLSDIDSDDDDQEKGDKDFSGMC 352

Query: 387 ATVSSE--------AVSEAESDSEDENEVYSKIPRQE--LVDSLKELLSLFEHRTNELTD 436
              ++E        A+ + +  SE        IP  +  L D      S  ++ T +   
Sbjct: 353 CLANNEDFINLCLMALEDKDDSSEHPEVCLDDIPSLDGSLCDD-----SCSDNDTVDDEL 407

Query: 437 LKEKYVDLMKQQKSTLLELKASEEELKGFNLISTTYEDRLKSLCQKLQEKCDKGSGNKHE 496
            KE+   LM +        K   E+LK  N        RL+S+  + ++ C   +    E
Sbjct: 408 SKERMAHLMIEISDKYRSSKYKIEKLKSENDGMALEIARLRSMIPE-EDTCSTCASYLSE 466

Query: 497 I-ALDDFIMA---GIDRSKVASMIYSTYKNKGKGIGYSEEKSKEYSLKSYCDCIKDGLKS 552
           I  L D + +   G      AS   ST       +G  E + KE             LK 
Sbjct: 467 INLLKDKLKSCTLGAGNPSSASAACSTCYEMKVDMGLLEMELKE-------------LKE 513

Query: 553 TFVPEGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKSDPKSQKIKILKRSEPVHQN 612
            FV +    +   ++ P  +    ++  +   L+    TK+D     ++     EP+H +
Sbjct: 514 KFVHD---RIGRCENCPILTSDNDELRQQVAMLR----TKND----LLESFATKEPIHSS 562

Query: 613 LIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYL 672
                  I K + +  K    S K+I          D     I  KV L + +K+ S YL
Sbjct: 563 C--ANCAILKTELKDAKTVIDSIKSI----------DSCSSCISLKVDLESAKKENS-YL 609

Query: 673 DSGCSRHMTGEKALFLTL 690
                R   G+K L + L
Sbjct: 610 QQSLERFAQGKKKLNMIL 627


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,632,398,003
Number of Sequences: 2540612
Number of extensions: 113943361
Number of successful extensions: 443953
Number of sequences better than 10.0: 7268
Number of HSP's better than 10.0 without gapping: 3556
Number of HSP's successfully gapped in prelim test: 3897
Number of HSP's that attempted gapping in prelim test: 400936
Number of HSP's gapped (non-prelim): 30474
length of query: 1591
length of database: 863,360,394
effective HSP length: 142
effective length of query: 1449
effective length of database: 502,593,490
effective search space: 728257967010
effective search space used: 728257967010
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 82 (36.2 bits)