BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137509.6 - phase: 0 /pseudo
(85 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO45752.1| pol protein [Cucumis melo] 105 4e-22
emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07... 100 1e-20
emb|CAC44142.1| putative polyprotein [Cicer arietinum] 96 3e-19
gb|AAV31377.1| putative polyprotein [Oryza sativa (japonica cult... 95 4e-19
gb|AAV32172.1| putative polyprotein [Oryza sativa (japonica cult... 92 3e-18
emb|CAE75948.1| B1159F04.11 [Oryza sativa (japonica cultivar-gro... 92 4e-18
ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultiva... 92 4e-18
emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa (japonica cultivar... 92 4e-18
gb|AAV31289.1| putative polyprotein [Oryza sativa (japonica cult... 92 4e-18
gb|AAP53495.1| putative polyprotein [Oryza sativa (japonica cult... 91 6e-18
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 91 6e-18
emb|CAD39363.2| OSJNBa0059H15.14 [Oryza sativa (japonica cultiva... 91 7e-18
emb|CAE75973.1| B1160F02.4 [Oryza sativa (japonica cultivar-grou... 91 7e-18
gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cul... 91 1e-17
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 91 1e-17
emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa (japonica cultiva... 91 1e-17
emb|CAE02460.1| OSJNBa0042D13.13 [Oryza sativa (japonica cultiva... 91 1e-17
gb|AAV43974.1| putative polyprotein [Oryza sativa (japonica cult... 91 1e-17
gb|AAV32171.1| putative polyprotein [Oryza sativa (japonica cult... 91 1e-17
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 91 1e-17
>gb|AAO45752.1| pol protein [Cucumis melo]
Length = 923
Score = 105 bits (261), Expect = 4e-22
Identities = 50/80 (62%), Positives = 64/80 (79%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
M +QSRQKSY D RRKD+E++VGD VFL+V PM GV R + K +P FVGPF+++E++
Sbjct: 762 MHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERI 821
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAYR+ALPPSLS +HDVF
Sbjct: 822 GPVAYRLALPPSLSTVHDVF 841
>emb|CAA73042.1| polyprotein [Ananas comosus] gi|7489851|pir||T07863 probable
polyprotein - pineapple retrotransposon dea1 (fragment)
Length = 871
Score = 100 bits (248), Expect = 1e-20
Identities = 44/77 (57%), Positives = 64/77 (82%)
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKVGVV 63
+QSRQ+SY D+RR+D+E+QVGDHVFL+V+P G+ R K +P F+GP++++E+VG V
Sbjct: 789 AQSRQRSYADRRRRDLEFQVGDHVFLKVSPTRGIKRFGIRGKLSPRFIGPYEILERVGPV 848
Query: 64 AYRIALPPSLSNLHDVF 80
AYR+ALPP+LS +H+VF
Sbjct: 849 AYRLALPPNLSGVHNVF 865
>emb|CAC44142.1| putative polyprotein [Cicer arietinum]
Length = 655
Score = 95.5 bits (236), Expect = 3e-19
Identities = 44/68 (64%), Positives = 54/68 (78%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK SQ RQKSY DKRR+ +E++ GDHVFLRV P TGVGRALK +K TP F+GP+ + ++
Sbjct: 588 MKTSQDRQKSYADKRRRLLEFEQGDHVFLRVTPTTGVGRALKSKKLTPKFIGPYQIYARI 647
Query: 61 GVVAYRIA 68
G VAYRIA
Sbjct: 648 GPVAYRIA 655
>gb|AAV31377.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|54287529|gb|AAV31273.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1196
Score = 95.1 bits (235), Expect = 4e-19
Identities = 41/80 (51%), Positives = 59/80 (73%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K PCFVGPF ++ +
Sbjct: 1025 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPCFVGPFKIVSRR 1084
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1085 GEVAYQLELPPSMAGIHDVF 1104
>gb|AAV32172.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1820
Score = 92.0 bits (227), Expect = 3e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 1649 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFHIIARR 1708
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1709 GEVAYQLELPASLGNVHDVF 1728
>emb|CAE75948.1| B1159F04.11 [Oryza sativa (japonica cultivar-group)]
gi|50923083|ref|XP_471902.1| B1159F04.11 [Oryza sativa
(japonica cultivar-group)]
Length = 1679
Score = 91.7 bits (226), Expect = 4e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 1548 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARR 1607
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1608 GEVAYQLELPASLGNVHDVF 1627
>ref|XP_471220.1| OSJNBb0016B03.9 [Oryza sativa (japonica cultivar-group)]
gi|38347553|emb|CAD39388.2| OSJNBb0016B03.9 [Oryza sativa
(japonica cultivar-group)]
Length = 1092
Score = 91.7 bits (226), Expect = 4e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 921 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARR 980
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 981 GEVAYQLELPASLGNVHDVF 1000
>emb|CAE05227.2| OSJNBa0011K22.9 [Oryza sativa (japonica cultivar-group)]
gi|50923119|ref|XP_471920.1| OSJNBa0011K22.9 [Oryza
sativa (japonica cultivar-group)]
Length = 1699
Score = 91.7 bits (226), Expect = 4e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 1568 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARR 1627
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1628 GEVAYQLELPASLGNVHDVF 1647
>gb|AAV31289.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1721
Score = 91.7 bits (226), Expect = 4e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 1550 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKGKLAPRYVGPFRIIARR 1609
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1610 GEVAYQLELPASLGNVHDVF 1629
>gb|AAP53495.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37533812|ref|NP_921208.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|18652524|gb|AAL77157.1| Putative polyprotein [Oryza
sativa]
Length = 1839
Score = 91.3 bits (225), Expect = 6e-18
Identities = 43/80 (53%), Positives = 57/80 (70%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY + RR+D+E+ VGD V+LRV P+ GV R K P +VGPF +I +
Sbjct: 1668 LKVAQSRQKSYENNRRRDLEFAVGDFVYLRVTPLRGVHRFQTKEKLAPRYVGPFRIIARR 1727
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1728 GEVAYQLELPASLGNVHDVF 1747
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 91.3 bits (225), Expect = 6e-18
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1546 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKEKLAPRFVGPFKIVSRR 1605
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1606 GEVAYQLELPPSMAGIHDVF 1625
>emb|CAD39363.2| OSJNBa0059H15.14 [Oryza sativa (japonica cultivar-group)]
gi|50921675|ref|XP_471198.1| OSJNBa0059H15.14 [Oryza
sativa (japonica cultivar-group)]
gi|32490114|emb|CAE04950.1| OSJNBa0070D17.1 [Oryza
sativa (japonica cultivar-group)]
Length = 1030
Score = 90.9 bits (224), Expect = 7e-18
Identities = 43/80 (53%), Positives = 57/80 (70%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ VGD V+LRV P+ GV R K P +VGPF ++ +
Sbjct: 859 LKVAQSRQKSYADNRRRDLEFAVGDFVYLRVTPLRGVHRFQAKGKLAPRYVGPFRILARR 918
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 919 GEVAYQLELPASLGNVHDVF 938
>emb|CAE75973.1| B1160F02.4 [Oryza sativa (japonica cultivar-group)]
gi|50921149|ref|XP_470935.1| B1160F02.4 [Oryza sativa
(japonica cultivar-group)]
Length = 1618
Score = 90.9 bits (224), Expect = 7e-18
Identities = 44/80 (55%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+++E+ V D V+LRV P+ GV R L K P FVGPF +I +
Sbjct: 1447 LKVTQSRQKSYADNRRRNLEFAVHDFVYLRVTPLRGVHRFLTKGKLAPRFVGPFRIIARC 1506
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 1507 GEVAYQLELPASLGNVHDVF 1526
>gb|AAP52430.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531682|ref|NP_920143.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671933|gb|AAM74295.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 518
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 347 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 406
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 407 GEVAYQLELPPSMAGIHDVF 426
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1461
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1290 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 1349
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1350 GEVAYQLELPPSMAGIHDVF 1369
>emb|CAE02906.1| OSJNBb0045P24.14 [Oryza sativa (japonica cultivar-group)]
gi|50930825|ref|XP_474940.1| OSJNBb0045P24.14 [Oryza
sativa (japonica cultivar-group)]
Length = 1195
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1072 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 1131
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1132 GEVAYQLELPPSMAGIHDVF 1151
>emb|CAE02460.1| OSJNBa0042D13.13 [Oryza sativa (japonica cultivar-group)]
gi|50922041|ref|XP_471381.1| OSJNBa0042D13.13 [Oryza
sativa (japonica cultivar-group)]
Length = 784
Score = 90.5 bits (223), Expect = 1e-17
Identities = 44/80 (55%), Positives = 56/80 (70%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +QSRQKSY D RR+D+E+ V D V+LRV P+ GV R K P FVGPF +I +
Sbjct: 677 LKVAQSRQKSYADNRRRDLEFAVDDFVYLRVTPLRGVHRFQTKAKLAPRFVGPFRIIARR 736
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LP SL N+HDVF
Sbjct: 737 GEVAYQLELPASLGNVHDVF 756
>gb|AAV43974.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1568
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1397 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 1456
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1457 GEVAYQLELPPSMTGIHDVF 1476
>gb|AAV32171.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1310
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1139 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 1198
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1199 GEVAYQLELPPSMAGIHDVF 1218
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 90.5 bits (223), Expect = 1e-17
Identities = 40/80 (50%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++ +QSRQKSY D RR+D+ ++ GD+V+LRV P+ GV R K P FVGPF ++ +
Sbjct: 1245 LRVAQSRQKSYADNRRRDLAFEEGDYVYLRVTPLRGVHRFQTKGKLAPRFVGPFKIVSRR 1304
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPPS++ +HDVF
Sbjct: 1305 GEVAYQLELPPSMAGIHDVF 1324
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 138,214,164
Number of Sequences: 2540612
Number of extensions: 4611501
Number of successful extensions: 7896
Number of sequences better than 10.0: 620
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 7271
Number of HSP's gapped (non-prelim): 629
length of query: 85
length of database: 863,360,394
effective HSP length: 61
effective length of query: 24
effective length of database: 708,383,062
effective search space: 17001193488
effective search space used: 17001193488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 68 (30.8 bits)
Medicago: description of AC137509.6