BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136450.2 + phase: 0 /pseudo
(198 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278... 89 9e-17
ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sati... 80 3e-14
gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza s... 79 1e-13
gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Ar... 79 1e-13
dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana] gi... 79 1e-13
gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cult... 77 2e-13
emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar... 77 2e-13
emb|CAI44607.1| P0650D04.11 [Oryza sativa (japonica cultivar-gro... 77 3e-13
ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa] gi|... 77 3e-13
emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar... 77 4e-13
gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cult... 76 6e-13
emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultiva... 75 1e-12
gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza s... 75 1e-12
gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cult... 74 2e-12
gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japon... 74 2e-12
ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultiv... 74 2e-12
emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultiva... 74 2e-12
ref|NP_909542.1| putative copia-type retrotransposon protein [Or... 74 2e-12
emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar... 74 3e-12
gb|AAM94550.1| putative lectin receptor kinase [Oryza sativa (ja... 73 4e-12
>emb|CAB75932.1| putative protein [Arabidopsis thaliana] gi|11278365|pir||T47841
hypothetical protein T2O9.150 - Arabidopsis thaliana
Length = 1339
Score = 88.6 bits (218), Expect = 9e-17
Identities = 61/186 (32%), Positives = 100/186 (52%), Gaps = 8/186 (4%)
Query: 12 VPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQKK 71
+P+F+G + +S NF ELW ++E GI +VV +R A ++
Sbjct: 12 IPRFDGYYDFWSMTMENFLR-----SRELWRLVEEGIPAIVVGTTPVSEAQRS---AVEE 63
Query: 72 LYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYE 131
K ++ L +AI + + DKST+K+++ S+ Y+GS KV+ A+ L ++E
Sbjct: 64 AKLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFE 123
Query: 132 LFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKD 191
L MK+GE I+ R T+V+ ++ + S VSKILRSL ++ V +IEE+ D
Sbjct: 124 LLAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESND 183
Query: 192 LNTLSV 197
L+TLS+
Sbjct: 184 LSTLSI 189
>ref|XP_468886.1| putative copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|29126367|gb|AAO66559.1| putative
copia-type pol polyprotein [Oryza sativa (japonica
cultivar-group)]
Length = 2027
Score = 80.5 bits (197), Expect = 3e-14
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK P FNG +++ WK H+ S++ +W I+E G + + D +H AQ
Sbjct: 34 GKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPENPTKEDDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ +E+ ++ D +AK ++ +L +EG+ VRE+K +L Q
Sbjct: 92 AA---------NAILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY R +V+ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFIMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>gb|AAK52148.1| putative gag-pol polyprotein, 3'-partial [Oryza sativa]
Length = 1074
Score = 78.6 bits (192), Expect = 1e-13
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK P FNG +++ WK H+ S++ +W I+E G ++ + D +H AQ
Sbjct: 34 GKAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQKPEDPTKEDDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
++ A+ +E+ ++ D +AK ++ +L +EG+ VRE+K +L Q
Sbjct: 92 AA---------NVILSALSGSEFNRVDDIESAKVIWDTLRNLHEGTDSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY +V+ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFVMLDGESPSDMYDHLSKIVNEIKGLGSKDMTDEVVVKKMVRAITLRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>gb|AAG51247.1| copia-type polyprotein, putative; 28768-32772 [Arabidopsis
thaliana] gi|25301683|pir||E86451 probable copia-type
polyprotein, 28768-32772 [imported] - Arabidopsis
thaliana
Length = 1334
Score = 78.6 bits (192), Expect = 1e-13
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 9/186 (4%)
Query: 12 VPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQKK 71
+PKF+GD E W N + S +E WDI+E GI E + + T +K
Sbjct: 9 IPKFDGDYEH---WAMLMENLIRS--KEWWDIIETGIPR---PERNVILTGAQRTELAEK 60
Query: 72 LYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYE 131
K H ++ L +I K + K T+K ++ S+ Y+G+ +V+ A+ L +E
Sbjct: 61 TVKDHK-VKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFE 119
Query: 132 LFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKD 191
+ +MK GE+I +SR + + ++ L + S V KILR+L ++ V AIEE+ +
Sbjct: 120 VLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNN 179
Query: 192 LNTLSV 197
+ L+V
Sbjct: 180 IKELTV 185
>dbj|BAB11200.1| copia-type polyprotein [Arabidopsis thaliana]
gi|13872710|emb|CAC37622.1| polyprotein [Arabidopsis
thaliana]
Length = 1334
Score = 78.6 bits (192), Expect = 1e-13
Identities = 56/186 (30%), Positives = 94/186 (50%), Gaps = 9/186 (4%)
Query: 12 VPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQKK 71
+PKF+GD E W N + S +E WDI+E GI E + + T +K
Sbjct: 9 IPKFDGDYEH---WAMLMENLIRS--KEWWDIIETGIPR---PERNVILTGAQRTELAEK 60
Query: 72 LYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYE 131
K H ++ L +I K + K T+K ++ S+ Y+G+ +V+ A+ L +E
Sbjct: 61 TVKDHK-VKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFE 119
Query: 132 LFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKD 191
+ +MK GE+I +SR + + ++ L + S V KILR+L ++ V AIEE+ +
Sbjct: 120 VLEMKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNN 179
Query: 192 LNTLSV 197
+ L+V
Sbjct: 180 IKELTV 185
>gb|AAP52089.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|37531000|ref|NP_919802.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|16519476|gb|AAL25185.1| Putative polyprotein [Oryza
sativa]
Length = 1407
Score = 77.4 bits (189), Expect = 2e-13
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK P FNG +++ WK H+ S++ +W I+E G ++ + D +H AQ
Sbjct: 34 GKAPYFNG--MDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ +E+ ++ +AK ++ +L +EG VRE+K +L Q
Sbjct: 92 AA---------NAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGMDSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY R +++ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFVMLDGESPSDMYDRLSKIINEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIHE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>emb|CAE03782.2| OSJNBa0063G07.6 [Oryza sativa (japonica cultivar-group)]
gi|50923031|ref|XP_471876.1| OSJNBa0063G07.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1539
Score = 77.4 bits (189), Expect = 2e-13
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAKIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAKKMLRALPEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>emb|CAI44607.1| P0650D04.11 [Oryza sativa (japonica cultivar-group)]
Length = 347
Score = 77.0 bits (188), Expect = 3e-13
Identities = 54/188 (28%), Positives = 94/188 (49%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK P FNG ++++ WK H+ S++ +W I+E G ++ + + +H AQ
Sbjct: 34 GKAPYFNG--KDYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDNENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ ++E+ ++ +AK ++ +L +EG+ VRE+K +L Q
Sbjct: 92 AA---------NAILSALSRSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGE MY R +V+ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFVMLDGEIPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>ref|XP_469477.1| putative gag-pol polyprotein [Oryza sativa]
gi|13937301|gb|AAK50132.1| putative gag-pol polyprotein
[Oryza sativa]
Length = 1700
Score = 77.0 bits (188), Expect = 3e-13
Identities = 48/184 (26%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETF 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>emb|CAD40164.2| OSJNBa0061A09.3 [Oryza sativa (japonica cultivar-group)]
gi|38346854|emb|CAD39936.2| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
gi|50921857|ref|XP_471289.1| OSJNBa0091C12.14 [Oryza
sativa (japonica cultivar-group)]
Length = 393
Score = 76.6 bits (187), Expect = 4e-13
Identities = 55/187 (29%), Positives = 91/187 (48%), Gaps = 12/187 (6%)
Query: 11 KVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQK 70
K P FNG +++ WK H+ S++ +W I+E G ++ + D KH AQ
Sbjct: 35 KAPYFNGT--DYAAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENKHKNAQA 92
Query: 71 KLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQY 130
A++ A+ +E+ ++ +AK ++ +L +EG+ VRE+K + Q+
Sbjct: 93 A---------NAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESKVEIFKGQF 143
Query: 131 ELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEET 189
E F M DGES MY R +V+ ++ L K V K++R++ R VT I E
Sbjct: 144 ERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRER 203
Query: 190 KDLNTLS 196
D TL+
Sbjct: 204 PDYKTLT 210
>gb|AAV31277.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1577
Score = 75.9 bits (185), Expect = 6e-13
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVKHEGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLMEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>emb|CAD40009.3| OSJNBb0052B05.12 [Oryza sativa (japonica cultivar-group)]
gi|50922011|ref|XP_471366.1| OSJNBb0052B05.12 [Oryza
sativa (japonica cultivar-group)]
Length = 1549
Score = 75.1 bits (183), Expect = 1e-12
Identities = 55/188 (29%), Positives = 92/188 (48%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK P FNG +++ WK H+ S++ +W I+E G +E + D +H AQ
Sbjct: 34 GKAPYFNGT--DYAAWKHKMKMHLKSINPLIWRIVEKGYVLQNPEEPTKENDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ +E+ ++ +AK ++ +L +EG+ VRE+ +L Q
Sbjct: 92 AA---------NAILSALSGSEFNRVDGIESAKVIWDTLRNLHEGTDSVRESMVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY R +V+ ++ L K V K+++++ R VT I E
Sbjct: 143 FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVQAITPRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>gb|AAN60991.1| Putative Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)] gi|34902324|ref|NP_912508.1| Putative
Zea mays retrotransposon Opie-2 [Oryza sativa (japonica
cultivar-group)]
Length = 2011
Score = 75.1 bits (183), Expect = 1e-12
Identities = 47/184 (25%), Positives = 88/184 (47%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R K + L ++ + E+ ++S+ TA ++ L +E + + ++AK
Sbjct: 58 RN--------LKLNAQAMNVLFNSLSQEEFDRVSNLETAYEIWNKLAEIHESTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTNLEVAQKMLRALPEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>gb|AAM94552.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|31432496|gb|AAP54118.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|37535058|ref|NP_921831.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1584
Score = 74.3 bits (181), Expect = 2e-12
Identities = 48/184 (26%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I+ +G + ++D
Sbjct: 2 SNEVNHVGKAPIFNGT--NYSTWKIKMSTHLKAMSFHIWSIVY--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFYMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALPEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>gb|AAP51907.1| putative gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|37530636|ref|NP_919620.1| putative
gag-pol polyprotein [Oryza sativa (japonica
cultivar-group)] gi|20042890|gb|AAM08718.1| Putative
gag-pol polyprotein [Oryza sativa]
Length = 1627
Score = 74.3 bits (181), Expect = 2e-12
Identities = 49/184 (26%), Positives = 89/184 (47%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLTEID- 56
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
H Q + AL + + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 57 --HCNLQLNAQAMN-----ALFNSFSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGATYTDLEVAQKMLRALPKKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>ref|XP_474806.1| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 74.3 bits (181), Expect = 2e-12
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK FNG ++ WK H+ S++ +W I+E G ++ + D +H AQ
Sbjct: 34 GKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ ++E+ + +AK ++ +L +EG+ VRE+K +L Q
Sbjct: 92 AA---------NAILSALSESEFNCVDGIESAKVIWDTLQNLHEGTNSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY R +V+ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>emb|CAE02851.4| OSJNBa0014F04.17 [Oryza sativa (japonica cultivar-group)]
Length = 491
Score = 74.3 bits (181), Expect = 2e-12
Identities = 55/188 (29%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 10 GKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDRRKHTPAQ 69
GK FNG ++ WK H+ S++ +W I+E G ++ + D +H AQ
Sbjct: 34 GKASYFNGT--DYVAWKHKMKMHLKSINPSIWRIVEKGYVLQNPEDPTKEDDENEHKNAQ 91
Query: 70 KKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQ 129
A++ A+ ++E+ + +AK ++ +L +EG+ VRE+K +L Q
Sbjct: 92 AA---------NAILSALSESEFNCVDGIESAKVIWDTLQNLHEGTNSVRESKVEILKGQ 142
Query: 130 YELFKMKDGESIEQMYSRFHTLVSGLQIL-KKSCVASDHVSKILRSLPARWRPKVTAIEE 188
+E F M DGES MY R +V+ ++ L K V K++R++ R VT I E
Sbjct: 143 FERFVMLDGESPSDMYDRLSKIVNEIKGLGSKDMTDEVVVKKMVRAITPRNSTLVTIIRE 202
Query: 189 TKDLNTLS 196
D TL+
Sbjct: 203 RPDYKTLT 210
>ref|NP_909542.1| putative copia-type retrotransposon protein [Oryza sativa (japonica
cultivar-group)] gi|27764656|gb|AAO23081.1| putative
copia-type retrotransposon protein [Oryza sativa
(japonica cultivar-group)]
Length = 1183
Score = 73.9 bits (180), Expect = 2e-12
Identities = 46/184 (25%), Positives = 89/184 (48%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFHIWSIVD--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ + ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLESTYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+LP ++
Sbjct: 110 LHFLEIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYNVLEVAQKMLRALPEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>emb|CAE05272.1| OSJNBb0014D23.6 [Oryza sativa (japonica cultivar-group)]
gi|50923981|ref|XP_472351.1| OSJNBb0014D23.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1475
Score = 73.6 bits (179), Expect = 3e-12
Identities = 47/184 (25%), Positives = 89/184 (47%), Gaps = 12/184 (6%)
Query: 3 NNKKSDFGKVPKFNGDLEEFS*WKTNFYNHVMSLDEELWDILEGGIGDLVVDEEGADVDR 62
+N+ + GK P FNG +S WK H+ ++ +W I++ +G + ++D
Sbjct: 2 SNEVNHVGKAPMFNGT--NYSTWKIKMSTHLKAMSFYIWSIVD--VGFAITGTPLTEIDH 57
Query: 63 RKHTPAQKKLYKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAK 122
R + + AL ++ + E+ ++S+ TA ++ L +EG+ + ++AK
Sbjct: 58 RN--------LQLNAQAMNALFNSLSQEEFDRVSNLETAYEIWNKLAEIHEGTSEYKDAK 109
Query: 123 ALMLVHQYELFKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPK 182
L QYE F M ES+ MY R + +V+ L+ L + + K+LR+L ++
Sbjct: 110 LHFLKIQYETFSMLPHESVNDMYGRLNVIVNDLKGLGANYTDLEVAQKMLRALSEKYETL 169
Query: 183 VTAI 186
VT +
Sbjct: 170 VTML 173
>gb|AAM94550.1| putative lectin receptor kinase [Oryza sativa (japonica
cultivar-group)] gi|31432498|gb|AAP54120.1| putative
lectin receptor kinase [Oryza sativa (japonica
cultivar-group)] gi|37535062|ref|NP_921833.1| putative
lectin receptor kinase [Oryza sativa (japonica
cultivar-group)]
Length = 594
Score = 73.2 bits (178), Expect = 4e-12
Identities = 41/126 (32%), Positives = 70/126 (55%)
Query: 73 YKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYEL 132
Y+ A+++A+P ++ K TAK + S+ G +VREAKA L +++EL
Sbjct: 109 YQDDRMALSAILRAVPPEMLPTLAVKDTAKEAWESVKTMRVGVARVREAKAQTLRNEFEL 168
Query: 133 FKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKDL 192
+MK+ ES+++ R + +V+ L++L V K LR +P+R+ AIE+ DL
Sbjct: 169 IRMKESESVDEFSMRLNAIVNNLRMLGDPLEEEKVVQKFLRVVPSRFVQVAIAIEQLLDL 228
Query: 193 NTLSVQ 198
TLS++
Sbjct: 229 KTLSIE 234
Score = 72.4 bits (176), Expect = 7e-12
Identities = 41/126 (32%), Positives = 69/126 (54%)
Query: 73 YKKHHTIRGALVKAIPKAEYMKMSDKSTAKSMFASLCANYEGSKKVREAKALMLVHQYEL 132
Y+ A+++A+P ++ K TAK + S+ G +VREAKA L +++EL
Sbjct: 376 YQDDRMALSAILRAVPPEMLPTLAVKDTAKEAWESVKTMRVGVARVREAKAQTLRNEFEL 435
Query: 133 FKMKDGESIEQMYSRFHTLVSGLQILKKSCVASDHVSKILRSLPARWRPKVTAIEETKDL 192
+MK+ ES++ R + +V+ L++L V K LR +P+R+ AIE+ DL
Sbjct: 436 IRMKESESVDDFSMRLNAIVNNLRMLGDPLEEEKVVQKFLRVVPSRFVQVAIAIEQLLDL 495
Query: 193 NTLSVQ 198
TLS++
Sbjct: 496 KTLSIE 501
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.319 0.134 0.389
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 324,391,600
Number of Sequences: 2540612
Number of extensions: 12696489
Number of successful extensions: 46138
Number of sequences better than 10.0: 305
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 96
Number of HSP's that attempted gapping in prelim test: 45773
Number of HSP's gapped (non-prelim): 332
length of query: 198
length of database: 863,360,394
effective HSP length: 121
effective length of query: 77
effective length of database: 555,946,342
effective search space: 42807868334
effective search space used: 42807868334
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 72 (32.3 bits)
Medicago: description of AC136450.2