BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC135796.2 - phase: 0
(419 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAS79612.1| putative tnp2 transposase [Ipomoea trifida] 129 2e-28
ref|XP_471647.1| OSJNBb0068N06.11 [Oryza sativa (japonica cultiv... 110 6e-23
emb|CAE04035.3| OSJNBb0068N06.11 [Oryza sativa (japonica cultiva... 110 6e-23
dbj|BAB09502.1| transposon protein-like [Arabidopsis thaliana] 107 5e-22
ref|XP_647058.1| hypothetical protein DDB0190122 [Dictyostelium ... 102 3e-20
pir||T14312 hypothetical protein - carrot transposon Tdc1 gi|220... 100 1e-19
gb|AAD46011.1| Similar to gb|X57297 TAM1 protein of transposon T... 99 2e-19
dbj|BAA85462.1| transposon-like ORF [Brassica rapa] 94 6e-18
ref|XP_507216.1| PREDICTED B1090H08.28 gene product [Oryza sativ... 90 1e-16
gb|AAL73485.1| repressor protein [Oryza sativa] 90 1e-16
ref|XP_472520.1| OSJNBa0011E07.15 [Oryza sativa (japonica cultiv... 84 8e-15
gi|38678252 TPA: transposase [Oryza sativa] 84 1e-14
gb|AAP52075.1| putative TNP-like transposable element [Oryza sat... 84 1e-14
gb|AAF70385.1| GABA-A receptor epsilon-like subunit [Mus musculu... 83 1e-14
emb|CAE05432.2| OSJNBa0059H15.2 [Oryza sativa (japonica cultivar... 83 1e-14
gb|AAF70384.1| GABA-A receptor epsilon-like subunit [Mus musculus] 83 1e-14
ref|XP_476080.1| putative TNP2 transposable element [Oryza sativ... 82 2e-14
gb|AAF79374.1| F15O4.30 [Arabidopsis thaliana] 82 3e-14
pir||A84505 probable TNP2-like transposon protein [imported] - A... 82 4e-14
gb|AAV44156.1| putative polyprotein [Oryza sativa (japonica cult... 81 5e-14
>gb|AAS79612.1| putative tnp2 transposase [Ipomoea trifida]
Length = 651
Score = 129 bits (323), Expect = 2e-28
Identities = 73/245 (29%), Positives = 123/245 (49%), Gaps = 9/245 (3%)
Query: 10 MYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPKGVNVH 69
MYNR G++G+T EFL G++EF+++AC P Y I CPC CKN L+ V VH
Sbjct: 1 MYNRLSPGKRGYTDEFLAGVEEFVNYACTLPVYESTNTIRCPCSKCKNRVHLSADEVRVH 60
Query: 70 IRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMPYSSQQDTGFGDAG---LDDQNFVQD 126
+ +KGF P YW WT HGE P +N + + S+Q +T D G N + +
Sbjct: 61 LYKKGFEPYYWVWTCHGEPIPTVN---EQFQETRNESNQYETMVFDVGGSSFIPFNVLNN 117
Query: 127 EEVPTNVETTEFCDMLNSTQQTLRPGDKNTSKMSAAIAMLSLKSKHNMSQDCFNDVIKFM 186
+E + +F D+L++ +Q L P +++S A+ M+++K+ N+ Q + + ++
Sbjct: 118 QEEDPHTSAKDFYDLLSTARQPLSPSCVEETELSYALKMMNIKATFNIPQLAMDQIFEYN 177
Query: 187 RESNHTENVTPSNSRGTKRTMQPTKISRKK-KCAQTHAPLIIPSDTVQTHANQATQPPPR 245
+ ++N PS +++ + ++ +K C L SD + PR
Sbjct: 178 KHIMGSDNRVPSRYYDSEKLISKLGLAHEKIDCCINSCMLYYKSDINDRQCKFCGE--PR 235
Query: 246 TKPRT 250
KPR+
Sbjct: 236 FKPRS 240
>ref|XP_471647.1| OSJNBb0068N06.11 [Oryza sativa (japonica cultivar-group)]
Length = 1188
Score = 110 bits (276), Expect = 6e-23
Identities = 61/190 (32%), Positives = 97/190 (50%), Gaps = 8/190 (4%)
Query: 5 EHRTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPK 64
E R+WMY R + G + E+L+G+K F+ A + Q + + CPC CKN + +
Sbjct: 3 EDRSWMYKRVVNGY--ISDEYLKGVKRFMSHAVSKLQGQAEKRVRCPCTKCKNGQLHDKR 60
Query: 65 GVNVHIRQKGFTPGYWYWTSHGE------EAPQINLEVDLHSDAMPYSSQQDTGFGDAGL 118
V +H+ KGFT Y W+ HGE E P+ +++ +++ Y
Sbjct: 61 IVQMHLCNKGFTENYHVWSRHGESGADTSETPEGSIDNEMNKGGNAYGESDHIDEMVLDA 120
Query: 119 DDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPGDKNTSKMSAAIAMLSLKSKHNMSQDC 178
NF Q+ E P N E F DML++ + L S++SA +L++KS HNMS C
Sbjct: 121 AGPNFCQNIEEPPNAEAASFFDMLDAADKPLWEKCGKHSQLSAVSRLLTIKSDHNMSVAC 180
Query: 179 FNDVIKFMRE 188
F++++K M+E
Sbjct: 181 FDELVKVMKE 190
>emb|CAE04035.3| OSJNBb0068N06.11 [Oryza sativa (japonica cultivar-group)]
Length = 1182
Score = 110 bits (276), Expect = 6e-23
Identities = 61/190 (32%), Positives = 97/190 (50%), Gaps = 8/190 (4%)
Query: 5 EHRTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPK 64
E R+WMY R + G + E+L+G+K F+ A + Q + + CPC CKN + +
Sbjct: 3 EDRSWMYKRVVNGY--ISDEYLKGVKRFMSHAVSKLQGQAEKRVRCPCTKCKNGQLHDKR 60
Query: 65 GVNVHIRQKGFTPGYWYWTSHGE------EAPQINLEVDLHSDAMPYSSQQDTGFGDAGL 118
V +H+ KGFT Y W+ HGE E P+ +++ +++ Y
Sbjct: 61 IVQMHLCNKGFTENYHVWSRHGESGADTSETPEGSIDNEMNKGGNAYGESDHIDEMVLDA 120
Query: 119 DDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPGDKNTSKMSAAIAMLSLKSKHNMSQDC 178
NF Q+ E P N E F DML++ + L S++SA +L++KS HNMS C
Sbjct: 121 AGPNFCQNIEEPPNAEAASFFDMLDAADKPLWEKCGKHSQLSAVSRLLTIKSDHNMSVAC 180
Query: 179 FNDVIKFMRE 188
F++++K M+E
Sbjct: 181 FDELVKVMKE 190
>dbj|BAB09502.1| transposon protein-like [Arabidopsis thaliana]
Length = 1089
Score = 107 bits (268), Expect = 5e-22
Identities = 69/221 (31%), Positives = 108/221 (48%), Gaps = 14/221 (6%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKN-ERFLTPKG 65
R WMY R + F +GL FL FA QP +LE+ + CPC+ C N R
Sbjct: 11 RHWMYERIDPTTNRVSQAFYEGLDNFLKFAKSQPLFLENKKLFCPCIKCGNGGRQQEEHI 70
Query: 66 VNVHIRQKGFTPGYWYWTSHGEE--------APQINLEVDLHSDAM-PYSSQQDTGFGDA 116
V H+ KGF YW WTSHGE+ + + + + H++ + PY FG
Sbjct: 71 VATHLFNKGFMLNYWVWTSHGEDYNMLINNNSEEDTVRFESHTEPVDPYVEMVSDAFGST 130
Query: 117 GLDDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPGDK-NTSKMSAAIAMLSLKSKHNMS 175
+ F Q E N E +F D+L++ +Q + G K SK+S A ++SLK+ +N+S
Sbjct: 131 ---ESEFDQMREEDPNFEAKKFYDILDAAKQPIYDGCKEGLSKLSLAARLMSLKTDNNLS 187
Query: 176 QDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKISRKK 216
Q+C + + + M+E N +P + K+ M+ + +K
Sbjct: 188 QNCMDSIAQIMQEYLPEGNNSPKSYYEIKKLMRSLGLPYQK 228
>ref|XP_647058.1| hypothetical protein DDB0190122 [Dictyostelium discoideum]
gi|60475110|gb|EAL73046.1| hypothetical protein
DDB0190122 [Dictyostelium discoideum]
Length = 4540
Score = 102 bits (253), Expect = 3e-20
Identities = 90/302 (29%), Positives = 129/302 (41%), Gaps = 23/302 (7%)
Query: 115 DAGLDDQNFVQDEEVPT--NVETTEFCDMLN---STQQTLRPGDKNTSK---MSAAIAML 166
DA DQ E+ N F DM+N S + G T K ++ ++ L
Sbjct: 117 DAKSKDQLLKSMNEIKVFQNSAPLNFPDMINNDYSDNKKCSVGKDFTFKKGGITISVPTL 176
Query: 167 SLKSKHNMS---QDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKISRKKKCAQTHA 223
+ ++S FN++++ ++ + N S+S + I Q+
Sbjct: 177 KISDDQDLSVVISQLFNEIVQSIKSTTSNNNNNDSSSVNNQLQSPSLPIVSPTLQPQSKQ 236
Query: 224 PLIIPSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQP 283
PL T Q Q QP + +P + P+ P + Q + Q QQ Q Q Q Q
Sbjct: 237 PLQQQQPTQQQQPPQQQQPTQQ-QPTPQQPTPQQPTPQQQPQPQQQQQQQQQQQQQQQQQ 295
Query: 284 TQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQP-TQP 342
Q Q++ Q QP Q Q PPQ +PQP + +Q Q QP QPQ QPQ + + QP QP
Sbjct: 296 QQQQQQQQQQPQQQQQPPQQPPQPQPQPQQQPQQQPQQQQPQQPQ-QPQQQPQQQPQQQP 354
Query: 343 RPQPQIRLQPQPTQHTSPPPPP--------PPQSRIQPIMSQTIPTQDLEWQDFAMINET 394
+ QPQ + QPQP Q P PP P Q +IQP Q P Q + Q+ +
Sbjct: 355 QQQPQQQQQPQPQQQQQPQQPPQQQIQPRQPQQPQIQPQQPQQ-PQQPQQPQEILYTQQI 413
Query: 395 PS 396
PS
Sbjct: 414 PS 415
Score = 47.0 bits (110), Expect = 0.001
Identities = 42/138 (30%), Positives = 50/138 (35%), Gaps = 27/138 (19%)
Query: 279 LQPQPTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQ 338
LQPQ QP + Q QPTQ Q PPQ Q QPTQ Q PQ +P
Sbjct: 230 LQPQSKQPLQ--QQQPTQQQQPPQ------------------QQQPTQQQPTPQ---QPT 266
Query: 339 PTQPRPQPQIRLQPQPTQHTSPPPPPPPQSRIQPIMSQTIPTQDLEWQDFAMINETPSST 398
P QP PQ QPQP Q Q + Q Q Q + Q P
Sbjct: 267 PQQPTPQ----QQPQPQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQQQQPPQQPPQPQPQ 322
Query: 399 TSHSSEESSGNRIPILPE 416
++ + P P+
Sbjct: 323 PQQQPQQQPQQQQPQQPQ 340
>pir||T14312 hypothetical protein - carrot transposon Tdc1
gi|2209031|dbj|BAA20532.1| ORF of 1.56 kb [Daucus
carota]
Length = 520
Score = 99.8 bits (247), Expect = 1e-19
Identities = 66/215 (30%), Positives = 106/215 (48%), Gaps = 21/215 (9%)
Query: 6 HRTWMYNRRITGRKGF-TAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPK 64
+R+WMY R T GF + F+ G++EF++ QP + I CPC CKN +F
Sbjct: 4 NRSWMYER--TDESGFLNSLFISGVEEFMNHVISQPTSMNGTSIQCPCTKCKNRKFWNSD 61
Query: 65 GVNVHIRQKGFTPGYWYWTSHGE-----------EAPQINLEVDLHSDAMPYSSQQDTGF 113
V +H+ + GF Y+ W+ HGE A N+ + + Y+ D
Sbjct: 62 IVKLHLLKNGFVRDYYIWSRHGESYIFNGNEDQSSANYSNVARGTDGNNLMYNMVIDA-- 119
Query: 114 GDAGLDDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPGDKNTSKMSAAIAMLSLKSKHN 173
G D + EE+P N E +MLNS+++ L G + TS+++A MLSLKS H+
Sbjct: 120 GGPSFDPH---RSEEMP-NAEAQNIYNMLNSSERELYDGCE-TSQLAAMAQMLSLKSDHH 174
Query: 174 MSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQ 208
S+ C++ +F++ +N + GTK+ M+
Sbjct: 175 WSEACYDQTSQFIKGILPKDNTFLDSFYGTKKHME 209
>gb|AAD46011.1| Similar to gb|X57297 TAM1 protein of transposon TNP2 from
Antirrhinum majus. [Arabidopsis thaliana]
gi|25518454|pir||C86470 hypothetical protein F21H2.10
[imported] - Arabidopsis thaliana
Length = 504
Score = 99.0 bits (245), Expect = 2e-19
Identities = 63/209 (30%), Positives = 107/209 (51%), Gaps = 24/209 (11%)
Query: 10 MYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPKGVNVH 69
MYN G T EF +GL +F+ FA Q LE G + CPC C NE+FL + H
Sbjct: 1 MYNYIDEGTGELTKEFKEGLVDFMRFAANQEIPLECGKMYCPCSTCGNEKFLPVDSIWKH 60
Query: 70 IRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMPYSSQQDTGFGDAGLDDQNFVQDE-- 127
+ +GF PGY+ W SHG++ L D + +D + +++N ++D
Sbjct: 61 LYSRGFMPGYYIWFSHGKDFE--TLANSNEDDEIHGLEPEDNNSNE---EEENIIRDPTG 115
Query: 128 --EVPTNV--ETTE------------FCDMLNSTQQTLRPGDK-NTSKMSAAIAMLSLKS 170
++ TN ETTE F DML++ ++ + G K S++SAA ++++K+
Sbjct: 116 VIQMVTNAFRETTESGIEEPNLEAKKFFDMLDAAKKPIYDGCKEGHSRLSAATRLMNIKT 175
Query: 171 KHNMSQDCFNDVIKFMRESNHTENVTPSN 199
++N+S+DC + + F+++ N+ P +
Sbjct: 176 EYNLSEDCVDAIADFVKDLLPEPNLAPGS 204
>dbj|BAA85462.1| transposon-like ORF [Brassica rapa]
Length = 703
Score = 94.4 bits (233), Expect = 6e-18
Identities = 64/209 (30%), Positives = 97/209 (45%), Gaps = 19/209 (9%)
Query: 5 EHRTWMY-NRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTP 63
E R WMY +R GR T E+L GL+ F+ A P E G + CPC C N +
Sbjct: 9 ELRNWMYMHRDANGR--VTKEYLAGLETFMHQADSTPLAQESGKMFCPCRKCNNSKLANR 66
Query: 64 KGVNVHIRQKGFTPGYWYWTSHGE-------EAPQIN-------LEVDLHSDAMPYSSQQ 109
+ V H+ +GFTP Y+ W HGE EA N + LH++ + +
Sbjct: 67 ENVWKHLINRGFTPNYYIWFQHGEGYNYDQNEASSSNSNFQEEPVNHHLHNEHSYHQEEM 126
Query: 110 -DTGFGDAGLDDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLS 167
D + D DE+ N++ +F MLN+ Q L G + SK+S A M++
Sbjct: 127 VDYDRVHDMVADAFVAHDEDEEPNIDAKKFYGMLNAANQPLYSGCREGLSKLSLAARMMN 186
Query: 168 LKSKHNMSQDCFNDVIKFMRESNHTENVT 196
+K+ HN+ + C N+ +E +NV+
Sbjct: 187 IKTDHNLPESCMNEWADLFKEYLPEDNVS 215
>ref|XP_507216.1| PREDICTED B1090H08.28 gene product [Oryza sativa (japonica
cultivar-group)] gi|50945217|ref|XP_482136.1| repressor
protein [Oryza sativa (japonica cultivar-group)]
gi|40253888|dbj|BAD05822.1| repressor protein [Oryza
sativa (japonica cultivar-group)]
Length = 181
Score = 90.1 bits (222), Expect = 1e-16
Identities = 62/147 (42%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 233 QTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQ---PQRR 289
+ A Q TQ PP+ + + +P P+ Q + Q Q PQ L PQ Q PQ +
Sbjct: 32 EPEAQQQTQQPPQPQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQ 91
Query: 290 LQPQPTQP---QAPPQLRRKPQPTQGRSQRQLDLQPQPTQP-QLQPQLRMRPQPTQPRPQ 345
+ PQP QP Q PQL ++PQ Q + Q Q L PQP QP QLQ Q ++ PQP QP
Sbjct: 92 VHPQPQQPPQLQPQPQLLQQPQLPQ-QLQPQSQLPPQPQQPPQLQLQSQLHPQPQQP--- 147
Query: 346 PQIRLQPQPTQHTSPPPPPPPQSRIQP 372
PQ LQPQP H P P QS+ QP
Sbjct: 148 PQ--LQPQPQLHQQPQPQAELQSQSQP 172
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 269 QSQQSQPQLFLQPQPTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQ 328
Q+ Q ++F + + +P+ +P+A Q ++ PQP L PQP QP
Sbjct: 5 QAVAEQQRMFAEARARMNNGAAKPKEPEPEAQQQTQQPPQP---------QLHPQPQQP- 54
Query: 329 LQPQLRMRPQPTQP----------RPQPQIRLQPQPTQHTSPPPPPPPQSRIQPIMSQTI 378
LQPQL++ PQP Q PQ Q QPQP H P PP Q + Q + +
Sbjct: 55 LQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQVHPQPQQPPQLQPQPQLLQQPQL 114
Query: 379 PTQ 381
P Q
Sbjct: 115 PQQ 117
Score = 63.2 bits (152), Expect = 1e-08
Identities = 52/134 (38%), Positives = 64/134 (46%), Gaps = 35/134 (26%)
Query: 228 PSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQ 287
P + + Q QP P+ P+ P+ P L Q QPQL QPQ Q
Sbjct: 74 PQQLLHPQSQQTPQPQPQVHPQ-----PQQPPQL----------QPQPQLLQQPQLPQ-- 116
Query: 288 RRLQPQPT---QPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQ-PQLQPQLRMRPQPTQPR 343
+LQPQ QPQ PPQL Q Q L PQP Q PQLQPQ ++ QP QP+
Sbjct: 117 -QLQPQSQLPPQPQQPPQL-----------QLQSQLHPQPQQPPQLQPQPQLHQQP-QPQ 163
Query: 344 PQPQIRLQPQPTQH 357
+ Q + QPQ T+H
Sbjct: 164 AELQSQSQPQ-TEH 176
>gb|AAL73485.1| repressor protein [Oryza sativa]
Length = 296
Score = 90.1 bits (222), Expect = 1e-16
Identities = 62/147 (42%), Positives = 77/147 (52%), Gaps = 13/147 (8%)
Query: 233 QTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQ---PQRR 289
+ A Q TQ PP+ + + +P P+ Q + Q Q PQ L PQ Q PQ +
Sbjct: 147 EPEAQQQTQQPPQPQLHPQPQQPLQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQ 206
Query: 290 LQPQPTQP---QAPPQLRRKPQPTQGRSQRQLDLQPQPTQP-QLQPQLRMRPQPTQPRPQ 345
+ PQP QP Q PQL ++PQ Q + Q Q L PQP QP QLQ Q ++ PQP QP
Sbjct: 207 VHPQPQQPPQLQPQPQLLQQPQLPQ-QLQPQSQLPPQPQQPPQLQLQSQLHPQPQQP--- 262
Query: 346 PQIRLQPQPTQHTSPPPPPPPQSRIQP 372
PQ LQPQP H P P QS+ QP
Sbjct: 263 PQ--LQPQPQLHQQPQPQAELQSQSQP 287
Score = 63.5 bits (153), Expect = 1e-08
Identities = 40/123 (32%), Positives = 56/123 (45%), Gaps = 20/123 (16%)
Query: 269 QSQQSQPQLFLQPQPTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQ 328
Q+ Q ++F + + +P+ +P+A Q ++ PQP L PQP QP
Sbjct: 120 QAVAEQQRMFAEARARMNNGAAKPKEPEPEAQQQTQQPPQP---------QLHPQPQQP- 169
Query: 329 LQPQLRMRPQPTQP----------RPQPQIRLQPQPTQHTSPPPPPPPQSRIQPIMSQTI 378
LQPQL++ PQP Q PQ Q QPQP H P PP Q + Q + +
Sbjct: 170 LQPQLQLHPQPQQQPSQLHPQQLLHPQSQQTPQPQPQVHPQPQQPPQLQPQPQLLQQPQL 229
Query: 379 PTQ 381
P Q
Sbjct: 230 PQQ 232
Score = 63.2 bits (152), Expect = 1e-08
Identities = 52/134 (38%), Positives = 64/134 (46%), Gaps = 35/134 (26%)
Query: 228 PSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQ 287
P + + Q QP P+ P+ P+ P L Q QPQL QPQ Q
Sbjct: 189 PQQLLHPQSQQTPQPQPQVHPQ-----PQQPPQL----------QPQPQLLQQPQLPQ-- 231
Query: 288 RRLQPQPT---QPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQ-PQLQPQLRMRPQPTQPR 343
+LQPQ QPQ PPQL Q Q L PQP Q PQLQPQ ++ QP QP+
Sbjct: 232 -QLQPQSQLPPQPQQPPQL-----------QLQSQLHPQPQQPPQLQPQPQLHQQP-QPQ 278
Query: 344 PQPQIRLQPQPTQH 357
+ Q + QPQ T+H
Sbjct: 279 AELQSQSQPQ-TEH 291
>ref|XP_472520.1| OSJNBa0011E07.15 [Oryza sativa (japonica cultivar-group)]
gi|38346369|emb|CAE04206.2| OSJNBa0011E07.15 [Oryza
sativa (japonica cultivar-group)]
Length = 906
Score = 84.0 bits (206), Expect = 8e-15
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY + + EF+ G+ FL A Q G I CPC CKN++ + +
Sbjct: 3 RQWMYADQRS------KEFIDGVYYFLRVAEANNQ---KGFICCPCNKCKNQKEYSASRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQI---NLEVDLHSDAMPYSSQQDTGFGDAGLD-DQ 121
++ H+ + GF P Y YWTSHGE+ ++ +E D D Y+ + G+ +D D
Sbjct: 54 IHFHLFESGFMPSYNYWTSHGEQGVEMEEDEVEDDKIPDFAQYAGFEGNQTGEEDIDADY 113
Query: 122 NFVQDEEVPTNVETTEFCD----------MLNSTQQTLRPG-DKNTSKMSAAIAMLSLKS 170
N V D+ + E C+ ML + +L PG ++ K+ + L K+
Sbjct: 114 NDVADDHGQMLQDAKEDCESEKGAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLEFLQWKA 173
Query: 171 KHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKISRKKKCAQTHAPLIIPSD 230
K+ +S F D++K ++ N P K+ + P + +K HA P+D
Sbjct: 174 KNGVSDKAFGDLLKLVKNILPEGNKLPETMYEAKKIVCPLGLEVQK----IHA---CPND 226
Query: 231 TVQTHANQ 238
+ H +
Sbjct: 227 CILYHGEE 234
>gi|38678252 TPA: transposase [Oryza sativa]
Length = 1104
Score = 83.6 bits (205), Expect = 1e-14
Identities = 60/223 (26%), Positives = 102/223 (44%), Gaps = 33/223 (14%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY R + EF+ G+ FL A Q G I CPC CKN++ + +
Sbjct: 3 RQWMYADRRS------KEFIDGVHYFLKVAEASRQR---GFICCPCNKCKNQKEYSASRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMPYSSQ------QDTGFGDAGLD 119
++ H+ + GF P Y YWTSHGE+ ++ E ++ D +P +Q TG + D
Sbjct: 54 IHFHLFESGFIPSYNYWTSHGEQGVEME-EEEVEDDNIPDFAQYVGFEGNQTGEEEIAAD 112
Query: 120 DQNFVQD---------EEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLSLK 169
+ D E+ + E + ML + +L PG ++ K+ + +L K
Sbjct: 113 GNDVADDLGQMLQDAREDCESEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQWK 172
Query: 170 SKHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKI 212
+K+ +S F D++K ++ N+ P ++ + T + KI
Sbjct: 173 AKNGVSDKAFGDLLKLVK------NILPGGNKLPETTYEAKKI 209
>gb|AAP52075.1| putative TNP-like transposable element [Oryza sativa (japonica
cultivar-group)] gi|37530972|ref|NP_919788.1| putative
TNP-like transposable element [Oryza sativa (japonica
cultivar-group)] gi|19919979|gb|AAM08427.1| Putative
TNP-like transposable element [Oryza sativa]
gi|16519462|gb|AAL25171.1| Putative TNP-like
transposable element [Oryza sativa]
Length = 2535
Score = 83.6 bits (205), Expect = 1e-14
Identities = 60/223 (26%), Positives = 102/223 (44%), Gaps = 33/223 (14%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY R + EF+ G+ FL A Q G I CPC CKN++ + +
Sbjct: 3 RQWMYADRRS------KEFIDGVHYFLKVAEASRQR---GFICCPCNKCKNQKEYSASRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMPYSSQ------QDTGFGDAGLD 119
++ H+ + GF P Y YWTSHGE+ ++ E ++ D +P +Q TG + D
Sbjct: 54 IHFHLFESGFIPSYNYWTSHGEQGVEME-EEEVEDDNIPDFAQYVGFEGNQTGEEEIAAD 112
Query: 120 DQNFVQD---------EEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLSLK 169
+ D E+ + E + ML + +L PG ++ K+ + +L K
Sbjct: 113 GNDVADDLGQMLQDAREDCESEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQWK 172
Query: 170 SKHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKI 212
+K+ +S F D++K ++ N+ P ++ + T + KI
Sbjct: 173 AKNGVSDKAFGDLLKLVK------NILPGGNKLPETTYEAKKI 209
Score = 42.7 bits (99), Expect = 0.021
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 17/87 (19%)
Query: 283 PTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQP 342
P P P P+ P APP P P Q + L P PT P+ P PT P
Sbjct: 1666 PAPPSPPQDPAPSPPHAPPA----PSPPQAPASTP-PLDPAPTPPRA-------PTPTPP 1713
Query: 343 RPQPQIRLQPQPTQHTSPPPPPPPQSR 369
+ P P++ +PP PPP +R
Sbjct: 1714 QAP-----LPAPSKSRAPPAPPPAHTR 1735
>gb|AAF70385.1| GABA-A receptor epsilon-like subunit [Mus musculus]
gi|8393396|ref|NP_059065.1| gamma-aminobutyric acid
(GABA-A) receptor, subunit epsilon [Mus musculus]
Length = 912
Score = 83.2 bits (204), Expect = 1e-14
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 224 PLIIPSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ-QSQPQLFLQPQ 282
PL +P Q QP P+ +P+ + P+ T Q++ Q + +PQ QPQ
Sbjct: 184 PLPLPLPEPQPEPQPDPQPEPQPEPQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQ 243
Query: 283 PTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQP 342
P +PQ QP+P QPQ PQ +PQP + Q + + QP+P QP+ QP+ + P+P QP
Sbjct: 244 P-EPQPEPQPEP-QPQPEPQPEPEPQP-EPEPQPEPEPQPEP-QPEPQPEPKPEPEP-QP 298
Query: 343 RPQPQIRLQPQPTQHTSPPPPPPPQSRIQP 372
P+PQ QP+P P P P P+ + +P
Sbjct: 299 EPEPQPEPQPEPQPEPKPEPEPQPEPKPEP 328
Score = 78.2 bits (191), Expect = 4e-13
Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 228 PSDTVQTHANQATQPPPRTKPRT-------KFNRPRP---PKALTRLQLRNQSQ---QSQ 274
P Q QP P+ +P+T + RPRP P+ Q Q + Q +
Sbjct: 200 PQPEPQPEPQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPE 259
Query: 275 PQLFLQPQPT-QPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQL 333
PQ +PQP +PQ +PQP +PQ PQ KP+P Q + + QP+P QP+ QP+
Sbjct: 260 PQPEPEPQPEPEPQPEPEPQP-EPQPEPQPEPKPEP---EPQPEPEPQPEP-QPEPQPEP 314
Query: 334 RMRPQPTQPRPQPQIRLQPQPTQHTSPPPPPPPQSRIQPIMSQTIPTQDLEWQDFAMINE 393
+ P+P QP P+P+ QP+P P P P P+ + +P Q P + E +
Sbjct: 315 KPEPEP-QPEPKPEPEPQPEPEPEPEPEPQPEPEPKPEP---QPEPEPEPEPEPEPEPEP 370
Query: 394 TPSSTTSHSSEESSGNRIPILPEAD 418
P E S + + + PE +
Sbjct: 371 EPEPEPEPEPEPESESELDLEPEPE 395
Score = 75.5 bits (184), Expect = 3e-12
Identities = 54/148 (36%), Positives = 74/148 (49%), Gaps = 18/148 (12%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPT---QPQRRLQPQPTQP 297
QP P+ +P +P P L L Q +PQ QP+P QP+ + +PQP +P
Sbjct: 163 QPEPQPQPLAG-RQPLPQPLPWPLPLPLPEPQPEPQPDPQPEPQPEPQPEPQPEPQP-EP 220
Query: 298 QAPPQLR--RKPQPT-QGRSQRQLDLQPQPT---QPQLQPQLRMRPQPT-------QPRP 344
Q P Q++ R+P+P Q Q Q + QP+P QPQ +PQ PQP +P+P
Sbjct: 221 QTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPEPQPEPEPQPEPEPQPEPEPQP 280
Query: 345 QPQIRLQPQPTQHTSPPPPPPPQSRIQP 372
+PQ QP+P P P P PQ QP
Sbjct: 281 EPQPEPQPEPKPEPEPQPEPEPQPEPQP 308
Score = 69.3 bits (168), Expect = 2e-10
Identities = 50/154 (32%), Positives = 70/154 (44%), Gaps = 20/154 (12%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQ---------SQPQLFLQPQPTQPQRRLQ 291
QP P +P T P + Q + Q++ SQPQ QPQP Q
Sbjct: 41 QPQPVPQPLTPPESPAGDTVVFGPQPQPQAESPGHDDVVFSSQPQPMPQPQPMPEP---Q 97
Query: 292 PQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQPRPQPQIRLQ 351
PQP +P+ PQ + +PQP GR PQP P PQ + P+P +P P+P+ +
Sbjct: 98 PQP-EPEPEPQPQPQPQPLAGRQPL-----PQPL-PWPMPQPQPEPEP-EPEPEPEPEPE 149
Query: 352 PQPTQHTSPPPPPPPQSRIQPIMSQTIPTQDLEW 385
P+P P P P P+ + QP+ + Q L W
Sbjct: 150 PEPEPEPEPEPEPQPEPQPQPLAGRQPLPQPLPW 183
Score = 66.6 bits (161), Expect = 1e-09
Identities = 39/137 (28%), Positives = 71/137 (51%), Gaps = 6/137 (4%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ-QSQPQLFLQPQPT-QPQRRLQPQPT-QP 297
QP P+ +P+ + PK Q + + + +PQ +P+P QP+ +P+P +P
Sbjct: 307 QPEPQPEPKPEPEPQPEPKPEPEPQPEPEPEPEPEPQPEPEPKPEPQPEPEPEPEPEPEP 366
Query: 298 QAPPQLRRKPQPT-QGRSQRQLDLQPQPT-QPQLQPQLRMRPQPTQPRPQPQIRLQPQPT 355
+ P+ +P+P + S+ +LDL+P+P P P P+P +P P+P+ +P+P
Sbjct: 367 EPEPEPEPEPEPEPEPESESELDLEPEPEPHPHPHPHPHPHPEP-EPEPEPEPEPEPEPE 425
Query: 356 QHTSPPPPPPPQSRIQP 372
P P P P+ + +P
Sbjct: 426 PEPEPEPEPEPEMKSEP 442
Score = 65.1 bits (157), Expect = 4e-09
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 228 PSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQ 287
P Q +P P+ +P+ R P+ L + + +P+ +P+P +P+
Sbjct: 92 PMPEPQPQPEPEPEPQPQPQPQPLAGRQPLPQPLP-WPMPQPQPEPEPEPEPEPEP-EPE 149
Query: 288 RRLQPQPTQPQAPPQLRRKPQPTQGRS-------------------QRQLDLQPQPTQPQ 328
+P+P +P+ PQ +PQP GR + Q D QP+P QP+
Sbjct: 150 PEPEPEP-EPEPEPQPEPQPQPLAGRQPLPQPLPWPLPLPLPEPQPEPQPDPQPEP-QPE 207
Query: 329 LQPQLRMRPQPT-----------------QPRPQPQIRLQPQPTQHTSPPPPPPPQSRIQ 371
QP+ + PQP QP PQPQ QP+P P P P P+ Q
Sbjct: 208 PQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPEPQPEPEPQ 267
Query: 372 P 372
P
Sbjct: 268 P 268
Score = 57.8 bits (138), Expect = 6e-07
Identities = 42/146 (28%), Positives = 66/146 (44%), Gaps = 16/146 (10%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQRRLQPQPTQPQAP 300
QP P +P+ + P P L + QP + PQP QP+ +P+P +P+
Sbjct: 91 QPMPEPQPQPE-PEPEPQPQPQPQPLAGRQPLPQPLPWPMPQP-QPEPEPEPEP-EPEPE 147
Query: 301 PQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQ-----PRPQPQIRLQPQPT 355
P+ +P+P + + +PQP +PQ QP +P P P P P+ + +PQP
Sbjct: 148 PEPEPEPEP-------EPEPEPQP-EPQPQPLAGRQPLPQPLPWPLPLPLPEPQPEPQPD 199
Query: 356 QHTSPPPPPPPQSRIQPIMSQTIPTQ 381
P P P P+ + +P P Q
Sbjct: 200 PQPEPQPEPQPEPQPEPQPEPQTPGQ 225
Score = 37.4 bits (85), Expect = 0.87
Identities = 26/110 (23%), Positives = 53/110 (47%), Gaps = 11/110 (10%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ-----QSQPQLFLQPQPTQPQRRLQPQPT 295
+P P +P + P++ + L L + + P +P+P +P+ +P+P
Sbjct: 365 EPEPEPEPEPEPEPEPEPESESELDLEPEPEPHPHPHPHPHPHPEPEP-EPEPEPEPEP- 422
Query: 296 QPQAPPQLRRKPQPTQGRSQRQLDLQPQPT---QPQLQPQLRMRPQPTQP 342
+P+ P+ +P+P +S+ Q L+PQP+ P +P+L + +P
Sbjct: 423 EPEPEPEPEPEPEPEM-KSEPQSQLEPQPSGKKLPAKEPELTVDCMTERP 471
>emb|CAE05432.2| OSJNBa0059H15.2 [Oryza sativa (japonica cultivar-group)]
gi|50921651|ref|XP_471186.1| OSJNBa0095H06.16 [Oryza
sativa (japonica cultivar-group)]
gi|38346791|emb|CAE02209.2| OSJNBa0095H06.16 [Oryza
sativa (japonica cultivar-group)]
Length = 837
Score = 83.2 bits (204), Expect = 1e-14
Identities = 66/248 (26%), Positives = 109/248 (43%), Gaps = 32/248 (12%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY R + EF+ G+ FL A Q G I CPC CKN++ + +
Sbjct: 3 RQWMYTDRRS------KEFINGVHYFLRVAEANKQ---KGFICCPCNKCKNQKEYSASRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQI---NLEVDLHSDAMPYSSQQDTGFGDAGLD-DQ 121
++ H+ + GF P Y WTSHGE+ ++ +E D D Y+ + G+ +D D
Sbjct: 54 IHFHLFESGFMPSYNCWTSHGEQGVEMKEDEVEDDNIPDFAQYAEFEGNQTGEEDIDADY 113
Query: 122 NFVQDEEVPTNVETTEFCD----------MLNSTQQTLRPG-DKNTSKMSAAIAMLSLKS 170
N V D+ + E C+ ML + +L PG ++ K+ + L K+
Sbjct: 114 NDVADDLSQMLQDAKEDCESEKGAHKLDKMLEDHRTSLYPGCEQRHKKLDTTLEFLQWKA 173
Query: 171 KHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKISRKKKCAQTHAPLIIPSD 230
K+ +S F D++K ++ N P + K+ + P + +K HA P+D
Sbjct: 174 KNGVSDKAFGDLLKLVKNILPEGNKLPETTYEAKKIVCPLGLEVQK----IHA---CPND 226
Query: 231 TVQTHANQ 238
+ H +
Sbjct: 227 CILYHGEE 234
>gb|AAF70384.1| GABA-A receptor epsilon-like subunit [Mus musculus]
Length = 910
Score = 83.2 bits (204), Expect = 1e-14
Identities = 54/150 (36%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 224 PLIIPSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ-QSQPQLFLQPQ 282
PL +P Q QP P+ +P+ + P+ T Q++ Q + +PQ QPQ
Sbjct: 184 PLPLPLPEPQPEPQPDPQPEPQPEPQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQ 243
Query: 283 PTQPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQP 342
P +PQ QP+P QPQ PQ +PQP + Q + + QP+P QP+ QP+ + P+P QP
Sbjct: 244 P-EPQPEPQPEP-QPQPEPQPEPEPQP-EPEPQPEPEPQPEP-QPEPQPEPKPEPEP-QP 298
Query: 343 RPQPQIRLQPQPTQHTSPPPPPPPQSRIQP 372
P+PQ QP+P P P P P+ + +P
Sbjct: 299 EPEPQPEPQPEPQPEPKPEPEPQPEPKPEP 328
Score = 78.2 bits (191), Expect = 4e-13
Identities = 62/205 (30%), Positives = 93/205 (45%), Gaps = 23/205 (11%)
Query: 228 PSDTVQTHANQATQPPPRTKPRT-------KFNRPRP---PKALTRLQLRNQSQ---QSQ 274
P Q QP P+ +P+T + RPRP P+ Q Q + Q +
Sbjct: 200 PQPEPQPEPQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPE 259
Query: 275 PQLFLQPQPT-QPQRRLQPQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQL 333
PQ +PQP +PQ +PQP +PQ PQ KP+P Q + + QP+P QP+ QP+
Sbjct: 260 PQPEPEPQPEPEPQPEPEPQP-EPQPEPQPEPKPEP---EPQPEPEPQPEP-QPEPQPEP 314
Query: 334 RMRPQPTQPRPQPQIRLQPQPTQHTSPPPPPPPQSRIQPIMSQTIPTQDLEWQDFAMINE 393
+ P+P QP P+P+ QP+P P P P P+ + +P Q P + E +
Sbjct: 315 KPEPEP-QPEPKPEPEPQPEPEPEPEPEPQPEPEPKPEP---QPEPEPEPEPEPEPEPEP 370
Query: 394 TPSSTTSHSSEESSGNRIPILPEAD 418
P E S + + + PE +
Sbjct: 371 EPEPEPEPEPEPESESELDLEPEPE 395
Score = 75.5 bits (184), Expect = 3e-12
Identities = 54/148 (36%), Positives = 74/148 (49%), Gaps = 18/148 (12%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPT---QPQRRLQPQPTQP 297
QP P+ +P +P P L L Q +PQ QP+P QP+ + +PQP +P
Sbjct: 163 QPEPQPQPLAG-RQPLPQPLPWPLPLPLPEPQPEPQPDPQPEPQPEPQPEPQPEPQP-EP 220
Query: 298 QAPPQLR--RKPQPT-QGRSQRQLDLQPQPT---QPQLQPQLRMRPQPT-------QPRP 344
Q P Q++ R+P+P Q Q Q + QP+P QPQ +PQ PQP +P+P
Sbjct: 221 QTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPEPQPEPEPQPEPEPQPEPEPQP 280
Query: 345 QPQIRLQPQPTQHTSPPPPPPPQSRIQP 372
+PQ QP+P P P P PQ QP
Sbjct: 281 EPQPEPQPEPKPEPEPQPEPEPQPEPQP 308
Score = 69.3 bits (168), Expect = 2e-10
Identities = 50/154 (32%), Positives = 70/154 (44%), Gaps = 20/154 (12%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQ---------SQPQLFLQPQPTQPQRRLQ 291
QP P +P T P + Q + Q++ SQPQ QPQP Q
Sbjct: 41 QPQPVPQPLTPPESPAGDTVVFGPQPQPQAESPGHDDVVFSSQPQPMPQPQPMPEP---Q 97
Query: 292 PQPTQPQAPPQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQPRPQPQIRLQ 351
PQP +P+ PQ + +PQP GR PQP P PQ + P+P +P P+P+ +
Sbjct: 98 PQP-EPEPEPQPQPQPQPLAGRQPL-----PQPL-PWPMPQPQPEPEP-EPEPEPEPEPE 149
Query: 352 PQPTQHTSPPPPPPPQSRIQPIMSQTIPTQDLEW 385
P+P P P P P+ + QP+ + Q L W
Sbjct: 150 PEPEPEPEPEPEPQPEPQPQPLAGRQPLPQPLPW 183
Score = 67.8 bits (164), Expect = 6e-10
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 6/136 (4%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ-QSQPQLFLQPQPT-QPQRRLQPQPT-QP 297
QP P+ +P+ + PK Q + + + +PQ +P+P QP+ +P+P +P
Sbjct: 307 QPEPQPEPKPEPEPQPEPKPEPEPQPEPEPEPEPEPQPEPEPKPEPQPEPEPEPEPEPEP 366
Query: 298 QAPPQLRRKPQPT-QGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQPRPQPQIRLQPQPTQ 356
+ P+ +P+P + S+ +LDL+P+P +P P P+P +P P+P+ +P+P
Sbjct: 367 EPEPEPEPEPEPEPEPESESELDLEPEP-EPHPHPHPHPHPEP-EPEPEPEPEPEPEPEP 424
Query: 357 HTSPPPPPPPQSRIQP 372
P P P P+ + +P
Sbjct: 425 EPEPEPEPEPEMKSEP 440
Score = 65.1 bits (157), Expect = 4e-09
Identities = 49/181 (27%), Positives = 74/181 (40%), Gaps = 40/181 (22%)
Query: 228 PSDTVQTHANQATQPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQ 287
P Q +P P+ +P+ R P+ L + + +P+ +P+P +P+
Sbjct: 92 PMPEPQPQPEPEPEPQPQPQPQPLAGRQPLPQPLP-WPMPQPQPEPEPEPEPEPEP-EPE 149
Query: 288 RRLQPQPTQPQAPPQLRRKPQPTQGRS-------------------QRQLDLQPQPTQPQ 328
+P+P +P+ PQ +PQP GR + Q D QP+P QP+
Sbjct: 150 PEPEPEP-EPEPEPQPEPQPQPLAGRQPLPQPLPWPLPLPLPEPQPEPQPDPQPEP-QPE 207
Query: 329 LQPQLRMRPQPT-----------------QPRPQPQIRLQPQPTQHTSPPPPPPPQSRIQ 371
QP+ + PQP QP PQPQ QP+P P P P P+ Q
Sbjct: 208 PQPEPQPEPQPEPQTPGQVQAGRQPRPRPQPEPQPQPEPQPEPQPEPQPQPEPQPEPEPQ 267
Query: 372 P 372
P
Sbjct: 268 P 268
Score = 57.8 bits (138), Expect = 6e-07
Identities = 42/146 (28%), Positives = 66/146 (44%), Gaps = 16/146 (10%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQQSQPQLFLQPQPTQPQRRLQPQPTQPQAP 300
QP P +P+ + P P L + QP + PQP QP+ +P+P +P+
Sbjct: 91 QPMPEPQPQPE-PEPEPQPQPQPQPLAGRQPLPQPLPWPMPQP-QPEPEPEPEP-EPEPE 147
Query: 301 PQLRRKPQPTQGRSQRQLDLQPQPTQPQLQPQLRMRPQPTQ-----PRPQPQIRLQPQPT 355
P+ +P+P + + +PQP +PQ QP +P P P P P+ + +PQP
Sbjct: 148 PEPEPEPEP-------EPEPEPQP-EPQPQPLAGRQPLPQPLPWPLPLPLPEPQPEPQPD 199
Query: 356 QHTSPPPPPPPQSRIQPIMSQTIPTQ 381
P P P P+ + +P P Q
Sbjct: 200 PQPEPQPEPQPEPQPEPQPEPQTPGQ 225
Score = 38.1 bits (87), Expect = 0.51
Identities = 26/108 (24%), Positives = 53/108 (49%), Gaps = 9/108 (8%)
Query: 241 QPPPRTKPRTKFNRPRPPKALTRLQLRNQSQ---QSQPQLFLQPQPTQPQRRLQPQPTQP 297
+P P +P + P++ + L L + + P +P+P +P+ +P+P +P
Sbjct: 365 EPEPEPEPEPEPEPEPEPESESELDLEPEPEPHPHPHPHPHPEPEP-EPEPEPEPEP-EP 422
Query: 298 QAPPQLRRKPQPTQGRSQRQLDLQPQPT---QPQLQPQLRMRPQPTQP 342
+ P+ +P+P +S+ Q L+PQP+ P +P+L + +P
Sbjct: 423 EPEPEPEPEPEPEM-KSEPQSQLEPQPSGKKLPAKEPELTVDCMTERP 469
>ref|XP_476080.1| putative TNP2 transposable element [Oryza sativa (japonica
cultivar-group)] gi|47777437|gb|AAT38070.1| putative
TNP2 transposable element [Oryza sativa (japonica
cultivar-group)]
Length = 1087
Score = 82.4 bits (202), Expect = 2e-14
Identities = 68/246 (27%), Positives = 113/246 (45%), Gaps = 34/246 (13%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY R + EF+ G+ FL A + +G ISCPC CKN++ + T +
Sbjct: 3 RQWMYADRRS------KEFIDGMHYFLGVANDNKR---NGFISCPCDKCKNQKEYSTTRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMP----YSSQQDTGFGDAGLDDQ 121
++ H+ Q GF Y WTSHGE + E ++ + +P Y ++ G+A LD +
Sbjct: 54 IHAHLFQWGFMRSYNCWTSHGEVGVAME-EDEVEDENIPDWAQYGGFEENTMGEAELDVE 112
Query: 122 N---------FVQD--EEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLSLK 169
+QD E+ + E + ML + L PG +K K+S + L K
Sbjct: 113 GNHGADELGQILQDLQEDCKSEKEMQKLERMLADHRTMLYPGCEKGYKKLSTILEFLQWK 172
Query: 170 SKHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQPTKISRKKKCAQTHAPLIIPS 229
+K+ +S F +++K ++ N P ++ K+T+ P + +K HA P+
Sbjct: 173 AKNGVSDKAFGELLKLVKNILPEGNELPESTYEAKKTVYPLGLEVQK----IHA---CPN 225
Query: 230 DTVQTH 235
D + H
Sbjct: 226 DCILYH 231
>gb|AAF79374.1| F15O4.30 [Arabidopsis thaliana]
Length = 1180
Score = 82.0 bits (201), Expect = 3e-14
Identities = 62/234 (26%), Positives = 106/234 (44%), Gaps = 37/234 (15%)
Query: 6 HRTWMYNR--RITGRKGFTAEFLQGLKEFLDFACQQPQYLE-DGVISCPCMLCKNER-FL 61
+R WMY R +TG +AE++ G++EF+ FA QP G CPC +CKNE+ +
Sbjct: 14 YRDWMYKRFDEVTGN--LSAEYVAGVEEFMTFANSQPIVQSCRGKFHCPCSVCKNEKHII 71
Query: 62 TPKGVNVHIRQKGFTPGYWYWTSHGEEAPQINLE-------------------------- 95
+ + V+ H+ +GF P Y+ W HGEE +N++
Sbjct: 72 SGRRVSSHLFSQGFMPDYYVWYKHGEE---LNMDIGTSYTDRTYFSENHEEVGNVVEDPY 128
Query: 96 VDLHSDAMPYSSQQDTGFG-DAGLDDQNFVQDEEVPTNVETTEFCDMLNSTQQTLRPG-D 153
VD+ +DA ++ D G D Q+ E P + +F D+L L G
Sbjct: 129 VDMVNDAFNFNVGYDDNVGHDDCYHHDGSYQNVEEPVRNHSNKFYDLLEGANNLLYDGCR 188
Query: 154 KNTSKMSAAIAMLSLKSKHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTM 207
+ S++S A ++ K+++NMS+ + V + + N ++ T++ M
Sbjct: 189 EGQSQLSLASRLMHNKAEYNMSEKLVDSVCEMFTDFLPEGNQATTSHYQTEKLM 242
>pir||A84505 probable TNP2-like transposon protein [imported] - Arabidopsis
thaliana
Length = 1040
Score = 81.6 bits (200), Expect = 4e-14
Identities = 52/198 (26%), Positives = 94/198 (47%), Gaps = 23/198 (11%)
Query: 22 TAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNERFLTPKGVNVHIRQKGFTPGYWY 81
T E+ L+ F+ +P E+G I CPC C NE++L V H+ +GF P Y+
Sbjct: 185 TIEYYDELRGFMYQTTNEPFARENGTILCPCRKCLNEKYLEFNVVKKHLYNRGFMPNYYV 244
Query: 82 WTSHG---EEAPQINLEVDLHS--------------DAMPYSSQQDTGFGDAGLDD---- 120
W HG E A ++ +++ + S D Y Q+ F D +
Sbjct: 245 WLRHGDVVEIAHELVIQIMVSSNLVILIMMRIMQVPDQFGYGYNQENRFHDMVTNAFHET 304
Query: 121 -QNFVQDEEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLSLKSKHNMSQDC 178
+F ++ NV+ F DML++ Q + G + SK+S A +M+++K+ +N+S+ C
Sbjct: 305 IASFPENISEEPNVDAQHFYDMLDAANQPIYEGCREGNSKLSLASSMMTIKADNNLSEKC 364
Query: 179 FNDVIKFMRESNHTENVT 196
+ + ++E +N++
Sbjct: 365 MDSWAELIKEYLPPDNIS 382
>gb|AAV44156.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1882
Score = 81.3 bits (199), Expect = 5e-14
Identities = 59/220 (26%), Positives = 99/220 (44%), Gaps = 27/220 (12%)
Query: 7 RTWMYNRRITGRKGFTAEFLQGLKEFLDFACQQPQYLEDGVISCPCMLCKNER-FLTPKG 65
R WMY R + EF+ G+ FL A Q G I CPC CKN++ + +
Sbjct: 3 RQWMYADRRS------KEFIDGVHYFLRVAEANRQR---GFICCPCNKCKNQKEYSASRT 53
Query: 66 VNVHIRQKGFTPGYWYWTSHGEEAPQINLEVDLHSDAMPYSSQ------QDTGFGDAGLD 119
++ H+ + GF P Y WTSHGE+ ++ E ++ D +P +Q TG + D
Sbjct: 54 IHFHLFESGFMPSYNCWTSHGEQGVEME-EDEVEDDNIPDFAQYVGFEGNQTGEEEIAAD 112
Query: 120 DQNFVQD---------EEVPTNVETTEFCDMLNSTQQTLRPG-DKNTSKMSAAIAMLSLK 169
+ D E+ + E + ML + +L PG ++ K+ + +L K
Sbjct: 113 GNDVADDLGQMLQDAREDCESEKEAHKLDKMLEDHRTSLYPGCEQGHKKLDTTLELLQWK 172
Query: 170 SKHNMSQDCFNDVIKFMRESNHTENVTPSNSRGTKRTMQP 209
+K+ +S F D++K ++ EN P + K+ + P
Sbjct: 173 AKNGVSDKAFGDLLKLIKNILPGENKLPETTYEAKKIVCP 212
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.314 0.130 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 841,885,951
Number of Sequences: 2540612
Number of extensions: 44683752
Number of successful extensions: 557960
Number of sequences better than 10.0: 14314
Number of HSP's better than 10.0 without gapping: 3452
Number of HSP's successfully gapped in prelim test: 11539
Number of HSP's that attempted gapping in prelim test: 282620
Number of HSP's gapped (non-prelim): 83806
length of query: 419
length of database: 863,360,394
effective HSP length: 131
effective length of query: 288
effective length of database: 530,540,222
effective search space: 152795583936
effective search space used: 152795583936
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 76 (33.9 bits)
Medicago: description of AC135796.2