BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127428.20 + phase: 0 /pseudo
         (1425 letters)

Database: nr 
           2,540,612 sequences; 863,360,394 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_704962.1| hypothetical protein [Plasmodium falciparum 3D7...    38  2.2
gb|AAG59452.1| orf; Unknown function [Escherichia coli O157:H7 E...    37  3.7

>ref|NP_704962.1| hypothetical protein [Plasmodium falciparum 3D7]
            gi|23615207|emb|CAD52197.1| hypothetical protein
            [Plasmodium falciparum 3D7]
          Length = 715

 Score = 38.1 bits (87), Expect = 2.2
 Identities = 31/97 (31%), Positives = 44/97 (44%), Gaps = 12/97 (12%)

Query: 916  TIQKHIVLKNQCT*SLMIESLEVKLQSKVKVLQVNKILKMHQNLI*HSTLKRVQKLNQIQ 975
            TI  ++ LKN     ++    + KL+   K     +IL   QN I HS  K + KL    
Sbjct: 425  TIANNLALKNPMIKGVLYNEQKNKLKQNKK-----EILLYGQNHIYHSYNKYIYKLGANT 479

Query: 976  KFNPHQKLNQYQKHLMKMLLKIFQKTLSKQFHQSLNT 1012
             F P+Q LNQY       +++I  K + K    S NT
Sbjct: 480  FFQPNQYLNQY-------IIRIISKIIEKYKINSSNT 509


>gb|AAG59452.1| orf; Unknown function [Escherichia coli O157:H7 EDL933]
            gi|25501232|pir||H86123 hypothetical protein yjgL
            [imported] - Escherichia coli  (strain O157:H7, substrain
            EDL933) gi|15804845|ref|NP_290886.1| hypothetical protein
            Z5865 [Escherichia coli O157:H7 EDL933]
          Length = 596

 Score = 37.4 bits (85), Expect = 3.7
 Identities = 27/82 (32%), Positives = 41/82 (49%), Gaps = 7/82 (8%)

Query: 948  QVNKILKMHQNLI*HSTLKRVQKLNQIQKFNPHQKLNQYQKHLMKMLLKIFQKTLSKQFH 1007
            ++ ++L  HQ L     L  +QKLN +QK N  QKLN  QK     L  I +   S++ +
Sbjct: 181  EIARLLNNHQKLNNLQKLNNLQKLNNLQKLNNLQKLNNIQK-----LNNIQELNNSQELN 235

Query: 1008 --QSLNTNHHILKS*SLETKKV 1027
              Q LN +  +  S  L+  +V
Sbjct: 236  NSQELNNSQELNNSQDLKNSQV 257


  Database: nr
    Posted date:  Jul 5, 2005 12:34 AM
  Number of letters in database: 863,360,394
  Number of sequences in database:  2,540,612
  
Lambda     K      H
   0.377    0.169    0.647 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,647,858,303
Number of Sequences: 2540612
Number of extensions: 51025572
Number of successful extensions: 323433
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 323415
Number of HSP's gapped (non-prelim): 7
length of query: 1425
length of database: 863,360,394
effective HSP length: 141
effective length of query: 1284
effective length of database: 505,134,102
effective search space: 648592186968
effective search space used: 648592186968
T: 11
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.6 bits)
S2: 82 (36.2 bits)