BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC126008.1 - phase: 0 /pseudo
(790 letters)
Database: nr
2,540,612 sequences; 863,360,394 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-... 568 e-160
ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultiva... 567 e-160
gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cul... 565 e-159
gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cult... 564 e-159
gb|AAT38724.1| putative retrotransposon protein [Solanum demissum] 560 e-158
gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum] 559 e-157
gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cul... 558 e-157
gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cul... 558 e-157
emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar... 558 e-157
gb|AAV43966.1| putative polyprotein [Oryza sativa (japonica cult... 555 e-156
gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cul... 554 e-156
gb|AAT39297.1| putative gag-pol protein [Solanum demissum] 554 e-156
gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cul... 553 e-156
ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin clust... 553 e-156
gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cult... 553 e-156
gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-... 552 e-155
ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cu... 551 e-155
gb|AAP52327.1| putative retroelement [Oryza sativa (japonica cul... 551 e-155
ref|XP_475750.1| putative polyprotein [Oryza sativa (japonica cu... 550 e-155
ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cu... 550 e-155
>gb|AAX94938.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza
sativa (japonica cultivar-group)]
Length = 1436
Score = 568 bits (1463), Expect = e-160
Identities = 330/804 (41%), Positives = 458/804 (56%), Gaps = 52/804 (6%)
Query: 19 LATMAQVLAQGNENTAANRRNEGEAEERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERI 78
L T+A V+A + A N+G F+R PPTF +P A+ W++ +E+
Sbjct: 19 LTTLAGVMATQTQLLQAIANNQGNRGRSSFGEFMRTKPPTFTTADEPMEAEDWLRIIEKK 78
Query: 79 FRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVEFLRKYFPEDLR 138
+ + KV A + A W K E TW +F F + P +
Sbjct: 79 LTLVRVREADKVIFAVNQLEGPAGDRWDTYKEAREEDAGEPTWEEFTAAFQENFVPAAVM 138
Query: 139 TKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMC 198
K+ EF ++QG +V EY +F +L+R+ A++ K KF GL + M
Sbjct: 139 RMKKNEFRRMRQGNTTVQEYLNRFTQLARYAIGDLADEE--EKIDKFIEGLNDELRGPMI 196
Query: 199 VQEIRDFDTLVHKC-RMFDDAGKAKSNYYK----------VQNEKKGKGHGVGKPYSKDK 247
Q+ F +L++K R+ +D + N+ + V KG KP
Sbjct: 197 GQDHESFQSLINKVVRLENDQRTVEHNHKRRLAMNRPPQGVPQRLKGATSSGWKPPIVAP 256
Query: 248 GKKRESGGGSRPSLA----------------DVKCYRCGTLGHYANECMNDLNCHKCGKA 291
+ +RP + +V C+ CG GHYAN NC K
Sbjct: 257 NRPAAPSNFNRPVVIQNRTPTPTLAAPGAKKNVDCFNCGEYGHYAN------NCPHPRKT 310
Query: 292 GHKAVDCRVVAREITCYNCGEKGHISTKPKKAA-----GKVFALNAKEVEQPDNLIRGMC 346
+ + R T G + + + A G+V + A+E ++ ++ GM
Sbjct: 311 PVRTGANAMTVRGTTTPAAGRGLFKTPQTNRTATGFGRGQVNHVRAEEAQEDQGVLMGMF 370
Query: 347 FINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPV 406
INSTP+ + D+GA+HSFIS ++ L + L + M++ +P G T S C P+
Sbjct: 371 SINSTPVKVLFDSGASHSFISRKASQKHNLTLVGLRKPMIVHSPG-GEITVSHACIDVPI 429
Query: 407 NFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQ 466
DV F +L+ L + +DVI GMDWL I+C + VT + P R T +Q
Sbjct: 430 RLRDVVFPSNLLVLIPQTLDVILGMDWLTKNRGVIDCRRRKVTLTTPWRSDMRA--TMDQ 487
Query: 467 VKKSLDGEACVFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVP 526
+ ++ +F M L + G +P+VQ FP+VFPED+ +P +R++EF IDL+P
Sbjct: 488 DPRLIERAGGIFTM---LPLKG------MPIVQRFPDVFPEDLPGMPPDRDIEFIIDLIP 538
Query: 527 GTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDY 586
GT+PIS PYRM +EL ELKKQ+ EL EK F+RPS SP GAPVL VKKKDGSMR+CVDY
Sbjct: 539 GTAPISKRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAPVLFVKKKDGSMRMCVDY 598
Query: 587 RQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGH 646
R LN++TIKN+YPLPRIDD DQL GA+VFSKIDLRSGYHQ++++ D+ KTAF TRYG
Sbjct: 599 RSLNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLKIRTGDVPKTAFSTRYGL 658
Query: 647 YEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQV 706
YE++VM FG++N P FM MN++F YLD+FVVVFIDDIL+YSK EEEH EHLR+VL+
Sbjct: 659 YEFTVMSFGLTNTPAYFMNLMNKVFMDYLDKFVVVFIDDILIYSKDEEEHVEHLRLVLEK 718
Query: 707 LKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGL 766
L++++L AK SKCEFWLKEV+FLGHVIS GG+ VDP+KV+AV +W++PKSV EI++ GL
Sbjct: 719 LRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVVVDPAKVEAVTEWKAPKSVTEIRSFLGL 778
Query: 767 DGYYRRFIEGFSKLALPLTQLTQK 790
GYYRRFIEGFSK+ P+TQL +K
Sbjct: 779 AGYYRRFIEGFSKITRPMTQLLKK 802
>ref|XP_472526.1| OSJNBa0074B10.6 [Oryza sativa (japonica cultivar-group)]
gi|38346256|emb|CAE02078.2| OSJNBa0074B10.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1447
Score = 567 bits (1461), Expect = e-160
Identities = 326/807 (40%), Positives = 458/807 (56%), Gaps = 52/807 (6%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
D +AQ LA Q+ L Q +N AN +N+ + +L FLR PPTF +P
Sbjct: 18 DPTLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 77
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR E G+ +TW +F
Sbjct: 78 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAE--GEPITWQEFT 135
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+R+ P D + KF
Sbjct: 136 AAFKKTHIPAGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDE--ERQEKF 193
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKC-RMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYS 244
GL + + + DF LV K R D + + + K +G
Sbjct: 194 LEGLNDELSYALMSTDFWDFQQLVDKAIRQEDKYNRMEQKMRRAAQFKAQQGSNQRPRLV 253
Query: 245 KDKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVARE 304
S GGS + + + G+ N+ N + A ++ V ++
Sbjct: 254 TGPQAPSYSQGGSSSVIRPQRQFYNNNTGNRGNDNRNMVARPAATSAQNQPVRREQGSKP 313
Query: 305 ITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLIRGMCF 347
+ C+NCG+ GH + K K +V + A E + +++ G
Sbjct: 314 VVCFNCGDPGHYADKCPKPRRVKNALAPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFP 373
Query: 348 INSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVN 407
+NS P + D+GATHSF+S S G+ V L R ++++TP + +T + C +
Sbjct: 374 VNSIPATVLFDSGATHSFLSKSFASNHGMEVVSLGRPLLVNTPGNQVFSTQY-CPSATIE 432
Query: 408 FGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQV 467
+V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 433 IEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT---------------- 476
Query: 468 KKSLDGEACVFMMFASLKVSG----EKGASVLPVVQEFPEVFPEDITELPSEREVEFAID 523
S +GE F +F S K G + +P+VQ++P+VFPED+ +P +R++EF ID
Sbjct: 477 --SSNGETVSFFVF-SPKSHGVNLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRID 533
Query: 524 LVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLC 583
LVPGT+PI PYRM+A+EL E+K+Q+++LL+K +IRPS SP GAPV+ V+KKD + R+C
Sbjct: 534 LVPGTNPIHKRPYRMAANELAEVKRQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMC 593
Query: 584 VDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTR 643
VDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTAF TR
Sbjct: 594 VDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTR 653
Query: 644 YGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIV 703
YG +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH EHLR+
Sbjct: 654 YGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLA 713
Query: 704 LQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAI 763
L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V EI++
Sbjct: 714 LEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSF 773
Query: 764 WGLDGYYRRFIEGFSKLALPLTQLTQK 790
GL GYYRRFIE FSK+A P+T+L QK
Sbjct: 774 LGLAGYYRRFIENFSKIARPMTRLLQK 800
>gb|AAP52432.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531686|ref|NP_920145.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|21671935|gb|AAM74297.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 974
Score = 565 bits (1457), Expect = e-159
Identities = 325/815 (39%), Positives = 462/815 (55%), Gaps = 68/815 (8%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
+ +AQ LA Q+ L Q +N AN +N+ + +L FLR PPTF +P
Sbjct: 22 EPTLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 81
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR GG+ +TW +F
Sbjct: 82 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA--GGEPITWQEFT 139
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+R+ P D + KF
Sbjct: 140 AAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDE--ERQEKF 197
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSK 245
GL + + + RDF LV D A + + Y +++ +K+ + S
Sbjct: 198 LEGLNDELSYALMATDFRDFQQLV------DKAIRQEDKYNRIEQKKRRAAQFKAQQGSN 251
Query: 246 DKGK--------KRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVD 297
+ + GG S + + Y T + N+ N + C ++ V
Sbjct: 252 QRPRLITGPQAPSYPQGGSSSVARPQRQFYNNNT-SNRGNDNRNMVACPAATPVQNQPVR 310
Query: 298 CRVVAREITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDN 340
++ + C+NCG+ GH + K K +V + A E + +
Sbjct: 311 KEQGSKPVICFNCGDPGHYADKCPKPRRVKNAPVPNNPNVPAPKARVNHVAAAEAQNAPD 370
Query: 341 LIRGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFM 400
++ G +NS P + D+GATHSF+S S + G+ V L R ++++TP + +T +
Sbjct: 371 VVLGTFPVNSIPATVLFDSGATHSFLSKSFASKHGMEVVSLGRPLLVNTPGNQVFSTQY- 429
Query: 401 CAKCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGRE 460
C + +V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 430 CPSVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS------- 482
Query: 461 FLTAEQVKKSLDGEACVFMMFASLKVS-----GEKGASVLPVVQEFPEVFPEDITELPSE 515
+GE F FAS S + +P+VQ++P+VFPED+ +P +
Sbjct: 483 -----------NGETVSF--FASSPKSHGVVLNQVALQEIPIVQDYPDVFPEDLPGMPPK 529
Query: 516 REVEFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKK 575
R++EF IDLVPGT+PI PYRM+A+EL E+KKQ+++LL+K +IRPS SP GAPV+ V+K
Sbjct: 530 RDIEFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEK 589
Query: 576 KDGSMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDI 635
KD + R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDL SGYHQ+R++ EDI
Sbjct: 590 KDHTQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLHSGYHQLRIREEDI 649
Query: 636 SKTAFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEE 695
KTAF TRYG +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EE
Sbjct: 650 PKTAFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEE 709
Query: 696 HAEHLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPK 755
H EHLR+ L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK
Sbjct: 710 HEEHLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPK 769
Query: 756 SVFEIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
+V EI++ GL GYYRRFIE FSK+A P+T+L QK
Sbjct: 770 TVSEIRSFLGLAGYYRRFIENFSKIARPMTRLLQK 804
>gb|AAU44115.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1717
Score = 564 bits (1453), Expect = e-159
Identities = 325/811 (40%), Positives = 458/811 (56%), Gaps = 60/811 (7%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
D +AQ LA Q+ L Q +N AN +N+ + +L FLR PPTF +P
Sbjct: 282 DPTLAQILAQQTQLINLLVQQAQNQQANNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 341
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR E G+ +TW +F
Sbjct: 342 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAE--GEPITWQEFT 399
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+R+ P D + KF
Sbjct: 400 AAFRKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDE--ERQEKF 457
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDA------GKAKSNYYKVQNEKKGKGHGV 239
GL + + + RDF LV K +D K ++ +K Q + V
Sbjct: 458 LEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLV 517
Query: 240 GKPYSKDKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCR 299
P + GGS + + + + N+ N + A ++ V
Sbjct: 518 TGPQVPSYPQ-----GGSSSVVRPQRQFYNNNTSNRGNDNRNVVARPAATSAQNQPVRKE 572
Query: 300 VVAREITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLI 342
++ + C+NCG+ GH + K K +V + A E + +++
Sbjct: 573 QGSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNSNVPAPKARVNHVAAAEAQNAPDVV 632
Query: 343 RGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCA 402
G +NS P + D+GATHSF+S S G+ V L R ++++TP + +T + C
Sbjct: 633 LGTFPVNSIPATVLFDSGATHSFLSKSFTSNHGMEVISLERPLLVNTPGNQVFSTQY-CP 691
Query: 403 KCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFL 462
+ +V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 692 SATIEIEEVPFPSSLILLESKDLDVILGMDWLSCHRGVIDCANRKVTLT----------- 740
Query: 463 TAEQVKKSLDGEACVFMMFASLK---VSGEKGASVLPVVQEFPEVFPEDITELPSEREVE 519
S +GE F M + + + +P+VQ++P+VFPED+ +P +RE+E
Sbjct: 741 -------SSNGETVSFFMSSPKSHGVILNQVALQEIPIVQDYPDVFPEDLPGMPPKREIE 793
Query: 520 FAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGS 579
F IDLVPGT+PI PYRM+A+EL E+K+Q+E+LL+K +IRPS SP GAPV+ V+KKD +
Sbjct: 794 FRIDLVPGTNPIHKRPYRMAANELVEVKRQVEDLLQKGYIRPSTSPWGAPVIFVEKKDHT 853
Query: 580 MRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTA 639
R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTA
Sbjct: 854 QRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTA 913
Query: 640 FRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEH 699
F TRYG +E +VM FG++NAP FM MN++F YLD+ VVVFIDDIL+YSK++EEH EH
Sbjct: 914 FTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKLVVVFIDDILIYSKTKEEHEEH 973
Query: 700 LRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFE 759
LR+ L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V E
Sbjct: 974 LRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSE 1033
Query: 760 IKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
I++ GL GYYRRFIE FSK+A P+T+L QK
Sbjct: 1034 IRSFLGLAGYYRRFIENFSKIARPMTRLLQK 1064
>gb|AAT38724.1| putative retrotransposon protein [Solanum demissum]
Length = 1602
Score = 560 bits (1442), Expect = e-158
Identities = 336/850 (39%), Positives = 480/850 (55%), Gaps = 74/850 (8%)
Query: 4 VEMAGGRDDAAIAQALATMAQVLAQGNENTAANRRNEGEAEERRLDRFLRNNPPTFKGRF 63
V+ G +A +A+ ++QV+A R+EG A+ R+ FL NPP+F G
Sbjct: 86 VQDQGEVSNAEFREAIRMLSQVVAN-QVGQQRGVRHEG-ADTSRIREFLGMNPPSFMGSS 143
Query: 64 DPEGAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAK 123
E + +++ ++RIF M D ++V LA + + A W KG +WA
Sbjct: 144 TTEDPENFIEELKRIFDVMHVADTERVELAAYQLKDVARTWLDQWKGGRVENAPSASWAN 203
Query: 124 FKVEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCV 183
F+ FL +FP +L+ K EFL LKQ +SV EY+ KF +LSR+ P + A+ M ++
Sbjct: 204 FEEAFLGHFFPRELKEAKVREFLTLKQEPLSVREYSLKFTQLSRYAPEMVAD--MRNRMS 261
Query: 184 KFESGL--------------------RPVIY-QYMCVQEIRDFDTLVHK-CRMFDDAGKA 221
F +GL R ++Y Q + +++RD + K + ++ G+
Sbjct: 262 LFVAGLSRLSSKEGRAAMLIGDMDISRLMVYVQQVEEEKLRDREEFRSKRAKTGNEPGQQ 321
Query: 222 KSNYYKVQNEKKGKG---HGVGKPYSKDKGKK-------------RESGGGSRPSLADVK 265
K N + +++ KG V P + +G + SG ++ S
Sbjct: 322 KGNANRPSFQERQKGPAPSSVSAPAPRYRGGHNGQNSKDFKARPVQSSGSVAQRSSLFPA 381
Query: 266 CYRCGTLGHYANECMN-DLNCHKCGKAGHKAVDC------------RVVAREITCYNCGE 312
C RCG + +C + C KCG+ GH +C R + + +
Sbjct: 382 CARCGRT--HPGKCRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRMT 439
Query: 313 KGHISTKPKKAAGKVFALNAK-EVEQPDNLIRGMCFINSTPLIAIIDTGATHSFISASCV 371
++ A +++A+ ++ E E N++ M + + + A++D GA+ SF++
Sbjct: 440 PRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFVTPYVA 499
Query: 372 ERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKNMDVIFGM 431
+ ++ L + TP S + CPV+ +DL+ L + + DVI GM
Sbjct: 500 NKFDVLPERLCEPFCVSTPVGESILAERVYRDCPVSINHKSTMVDLIELDMVDFDVILGM 559
Query: 432 DWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVKKS----------LDGEACVFMMF 481
DWL A SI+C T+ V F P E + E+ ++ V K L + C++ +
Sbjct: 560 DWLHACYASIDCRTRVVKFQFPSEPI-LEWSSSSAVPKGRFISYLKARKLVSKGCIYHLA 618
Query: 482 ASLKVSGE-KGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPYRMSA 540
S E +P+V+EFPEVFP+D+ +P ERE++F IDL+P T PISI PYRM+
Sbjct: 619 RVNDSSVEIPYFQSVPIVREFPEVFPDDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAP 678
Query: 541 SELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKNRYPL 600
+EL ELK +LLEK FIRPSVSP GAPVL V+KKDGS+R+C+DYRQLNK+TIKN+YPL
Sbjct: 679 AELKELK----DLLEKGFIRPSVSPWGAPVLFVRKKDGSLRICIDYRQLNKVTIKNKYPL 734
Query: 601 PRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGVSNAP 660
PRIDD DQL GA FSKIDLRSGYHQ+RV+ DI KTAFRTRYGHYE+ VM FG++NAP
Sbjct: 735 PRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAP 794
Query: 661 GVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKLSKCE 720
FM+ MNR+F PYLD FV++FIDDIL+YS++EE+HA HLR VLQ LK+ +L AK SKCE
Sbjct: 795 AAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCE 854
Query: 721 FWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEGFSKL 780
FWLK V+FLGH++S GI VD K++AV W P S EI++ GL GYYRRF+EGFS +
Sbjct: 855 FWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSI 914
Query: 781 ALPLTQLTQK 790
A PLT+LTQK
Sbjct: 915 ASPLTKLTQK 924
>gb|AAT38744.1| putative gag-pol polyprotein [Solanum demissum]
Length = 1515
Score = 559 bits (1440), Expect = e-157
Identities = 336/850 (39%), Positives = 479/850 (55%), Gaps = 74/850 (8%)
Query: 4 VEMAGGRDDAAIAQALATMAQVLAQGNENTAANRRNEGEAEERRLDRFLRNNPPTFKGRF 63
V+ G +A +A+ ++QV+A R+EG A+ R+ FL NPP+F G
Sbjct: 80 VQDQGEVSNAEFREAIRMLSQVVAN-QVGQQRGVRHEG-ADTSRIREFLGMNPPSFMGSS 137
Query: 64 DPEGAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAK 123
E + +++ ++RIF M D ++V LA + + A W KG +WA
Sbjct: 138 TTEDPENFIEELKRIFDVMHVADTERVELAAYQLKDVARTWLDQWKGGRVENAPSASWAN 197
Query: 124 FKVEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCV 183
F+ FL +FP +L+ K EFL LKQ +SV EY+ KF +LSR+ P + A+ M ++
Sbjct: 198 FEEAFLGHFFPRELKEAKVREFLTLKQEPLSVREYSLKFTQLSRYAPEMVAD--MRNRMS 255
Query: 184 KFESGL--------------------RPVIY-QYMCVQEIRDFDTLVHK-CRMFDDAGKA 221
F +GL R ++Y Q + +++RD + K + ++ G+
Sbjct: 256 LFVAGLSRLSSKEGRAAMLIGDMDISRLMVYVQQVEEEKLRDREEFRSKRAKTGNEPGQQ 315
Query: 222 KSNYYKVQNEKKGKG---HGVGKPYSKDKGKK-------------RESGGGSRPSLADVK 265
K N + +++ KG V P + +G + SG ++ S
Sbjct: 316 KGNANRPSFQERQKGPAPSSVSAPAPRYRGGHNGQNSKDFKARPVQSSGSVAQRSSLFPA 375
Query: 266 CYRCGTLGHYANECMN-DLNCHKCGKAGHKAVDC------------RVVAREITCYNCGE 312
C RCG + +C + C KCG+ GH +C R + + +
Sbjct: 376 CARCGRT--HPGKCRDGQTGCFKCGQEGHFVKECPKNNQGSGSLGSRTQSSSVAPPDRMT 433
Query: 313 KGHISTKPKKAAGKVFALNAK-EVEQPDNLIRGMCFINSTPLIAIIDTGATHSFISASCV 371
++ A +++A+ ++ E E N++ M + + + A++D GA+ SF++
Sbjct: 434 PRGATSSTGGGANRLYAITSRHEQENSPNVVTAMIKVFAFYVYALLDPGASLSFVTPYVA 493
Query: 372 ERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKNMDVIFGM 431
+ ++ L + TP S + CPV+ +DL+ L + + DVI GM
Sbjct: 494 NKFDVLPERLCEPFCVSTPVGESILAERVYRDCPVSINHKSTMVDLIELDMVDFDVILGM 553
Query: 432 DWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVKKS----------LDGEACVFMMF 481
DWL A SI+C T+ V F P E + E+ ++ V K L + C++ +
Sbjct: 554 DWLHACYASIDCRTRVVKFQFPSEPI-LEWSSSSAVPKGRFISYLKARKLVSKGCIYHLA 612
Query: 482 ASLKVSGE-KGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPYRMSA 540
S E +P+V+EFPEVFP D+ +P ERE++F IDL+P T PISI PYRM+
Sbjct: 613 RVNDSSVEIPYFQSVPIVREFPEVFPNDLPGIPPEREIDFGIDLIPDTRPISIPPYRMAP 672
Query: 541 SELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKNRYPL 600
+EL ELK +LLEK FIRPSVSP GAPVL V+KKDGS+R+C+DYRQLNK+TIKN+YPL
Sbjct: 673 AELKELK----DLLEKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVTIKNKYPL 728
Query: 601 PRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGVSNAP 660
PRIDD DQL GA FSKIDLRSGYHQ+RV+ DI KTAFRTRYGHYE+ VM FG++NAP
Sbjct: 729 PRIDDLFDQLQGATCFSKIDLRSGYHQLRVRERDIPKTAFRTRYGHYEFLVMSFGLTNAP 788
Query: 661 GVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKLSKCE 720
FM+ MNR+F PYLD FV++FIDDIL+YS++EE+HA HLR VLQ LK+ +L AK SKCE
Sbjct: 789 AAFMDLMNRVFRPYLDMFVIIFIDDILIYSRNEEDHASHLRTVLQTLKDKELYAKFSKCE 848
Query: 721 FWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEGFSKL 780
FWLK V+FLGH++S GI VD K++AV W P S EI++ GL GYYRRF+EGFS +
Sbjct: 849 FWLKSVAFLGHIVSGDGIKVDTRKIEAVQNWPRPTSPTEIRSFLGLAGYYRRFVEGFSSI 908
Query: 781 ALPLTQLTQK 790
A PLT+LTQK
Sbjct: 909 ASPLTKLTQK 918
>gb|AAP52375.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531572|ref|NP_920088.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1466
Score = 558 bits (1438), Expect = e-157
Identities = 323/812 (39%), Positives = 461/812 (55%), Gaps = 62/812 (7%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
+ +AQ LA Q+ L Q +N N +N+ + +L FLR PPTF +P
Sbjct: 22 EPTLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 81
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR GG+ +TW +F
Sbjct: 82 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA--GGEPITWQEFT 139
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+R+ P D + KF
Sbjct: 140 AAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDE--ERQEKF 197
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDA------GKAKSNYYKVQNEKKGKGHGV 239
GL + + + +DF LV K +D K ++ +K Q + V
Sbjct: 198 LEGLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLV 257
Query: 240 GKPYSKDKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCR 299
P + GGS + + + G+ N+ N + ++ V
Sbjct: 258 TGPQVPSYPQ-----GGSSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRRE 312
Query: 300 VVAREITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLI 342
++ + C+NCG+ GH + K K +V + A E + +++
Sbjct: 313 QGSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVV 372
Query: 343 RGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCA 402
G +NS P + D+GATHSF+ S + G+ V L R ++++TP + + +T + C
Sbjct: 373 LGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRY-CP 431
Query: 403 KCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFL 462
+ +V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 432 SVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT----------- 480
Query: 463 TAEQVKKSLDGEACVFMMFASLKVSGEKGASV----LPVVQEFPEVFPEDITELPSEREV 518
S +GE F +S K GE V +P+VQ++P+VFPED+ +P +R++
Sbjct: 481 -------SSNGETVSFFA-SSPKSHGEVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDI 532
Query: 519 EFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDG 578
EF IDLVPGT+PI PYRM+A+EL E+KKQ+++L++K +IRPS SP GAPV+ V+KKD
Sbjct: 533 EFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYIRPSTSPWGAPVIFVEKKDH 592
Query: 579 SMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKT 638
+ R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KT
Sbjct: 593 TQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKT 652
Query: 639 AFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAE 698
AF TRYG +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH E
Sbjct: 653 AFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEE 712
Query: 699 HLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVF 758
HLR+ L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V
Sbjct: 713 HLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVS 772
Query: 759 EIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
EI++ GL GYYRRF+E FSK+A P+T+L QK
Sbjct: 773 EIRSFLGLAGYYRRFVENFSKIARPMTRLLQK 804
>gb|AAM01161.2| Putative retroelement [Oryza sativa (japonica cultivar-group)]
Length = 1661
Score = 558 bits (1438), Expect = e-157
Identities = 323/812 (39%), Positives = 461/812 (55%), Gaps = 62/812 (7%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
+ +AQ LA Q+ L Q +N N +N+ + +L FLR PPTF +P
Sbjct: 334 EPTLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 393
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR GG+ +TW +F
Sbjct: 394 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA--GGEPITWQEFT 451
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+R+ P D + KF
Sbjct: 452 AAFKKTHIPSGVVALKKREFRALNQGSRSVTEYLHDFNRLARYAPEDVRTDE--ERQEKF 509
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDA------GKAKSNYYKVQNEKKGKGHGV 239
GL + + + +DF LV K +D K ++ +K Q + V
Sbjct: 510 LEGLNDKLSYALMSTDFQDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLV 569
Query: 240 GKPYSKDKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCR 299
P + GGS + + + G+ N+ N + ++ V
Sbjct: 570 TGPQVPSYPQ-----GGSSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRRE 624
Query: 300 VVAREITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLI 342
++ + C+NCG+ GH + K K +V + A E + +++
Sbjct: 625 QGSKPVICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVV 684
Query: 343 RGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCA 402
G +NS P + D+GATHSF+ S + G+ V L R ++++TP + + +T + C
Sbjct: 685 LGTFPVNSIPATVLFDSGATHSFLCKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRY-CP 743
Query: 403 KCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFL 462
+ +V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 744 SVTIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT----------- 792
Query: 463 TAEQVKKSLDGEACVFMMFASLKVSGEKGASV----LPVVQEFPEVFPEDITELPSEREV 518
S +GE F +S K GE V +P+VQ++P+VFPED+ +P +R++
Sbjct: 793 -------SSNGETVSFFA-SSPKSHGEVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDI 844
Query: 519 EFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDG 578
EF IDLVPGT+PI PYRM+A+EL E+KKQ+++L++K +IRPS SP GAPV+ V+KKD
Sbjct: 845 EFRIDLVPGTNPIHKRPYRMAANELAEVKKQVDDLIQKGYIRPSTSPWGAPVIFVEKKDH 904
Query: 579 SMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKT 638
+ R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KT
Sbjct: 905 TQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKT 964
Query: 639 AFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAE 698
AF TRYG +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH E
Sbjct: 965 AFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEE 1024
Query: 699 HLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVF 758
HLR+ L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V
Sbjct: 1025 HLRLALEKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVS 1084
Query: 759 EIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
EI++ GL GYYRRF+E FSK+A P+T+L QK
Sbjct: 1085 EIRSFLGLAGYYRRFVENFSKIARPMTRLLQK 1116
>emb|CAD39763.2| OSJNBa0059D20.6 [Oryza sativa (japonica cultivar-group)]
gi|50930427|ref|XP_474741.1| OSJNBa0059D20.6 [Oryza
sativa (japonica cultivar-group)]
Length = 1470
Score = 558 bits (1437), Expect = e-157
Identities = 328/818 (40%), Positives = 457/818 (55%), Gaps = 44/818 (5%)
Query: 1 LCSVEMAGGRDDAAIAQALATMAQVLAQGNENTAANRRNEGEAEERRLDRFLRNNPPTFK 60
+ S A +D L T+A ++A + A N+G F+R PPTF
Sbjct: 1 MASRRRATTSNDETQTPDLNTLAGIMATQTQLLQAIASNQGNRGGSSFGEFMRTKPPTFA 60
Query: 61 GRFDPEGAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVT 120
+P A+ W++ +E+ + + KV A + A WW K E
Sbjct: 61 TAEEPMDAEDWLRIIEKKLTLVRVREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPN 120
Query: 121 WAKFKVEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVS 180
W +F F + P + K+ EF L+QG +V EY +F +L+R+ A++
Sbjct: 121 WEEFTTAFRDNFVPAAVMRMKKNEFRKLRQGNTTVQEYLNRFTQLARYATRDLADEE--E 178
Query: 181 KCVKFESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYK-----------VQ 229
K KF GL + M Q+ F +L++K ++ K + K
Sbjct: 179 KIDKFIEGLNDELRGPMIGQDHDSFQSLINKVVRLENDRKVVEHNRKRRLAMNRPPQTAP 238
Query: 230 NEKKGKGHGVGKPYSKDKGKKRESGGGSRP----------------SLADVKCYRCGTLG 273
KG +P + S RP S+ C+ CG G
Sbjct: 239 QRPKGTTPSAWRPTVVTTSRPAASSNFHRPVTIQNRAPTPNQAATGSVRPGSCFNCGEYG 298
Query: 274 HYANECMNDLNCHKCGKAGHKAVDCRVV-AREITCYNCGEKGHISTKPKKAAGKVFALNA 332
H+AN+C + A A+ A + + +T + G+V + A
Sbjct: 299 HFANKCPHPNKTPIRTGANATAIHGTATPAAGRGLFRTPQTNRTATGFGR--GQVNHVRA 356
Query: 333 KEVEQPDNLIRGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPAS 392
+E ++ ++ GM +NSTP+ + D+GA+HSFIS ++ L L + M++ +P
Sbjct: 357 EEAQEDQGVLMGMFSLNSTPVKVLFDSGASHSFISLKASQQHNLTRVKLRQPMLVHSPG- 415
Query: 393 GSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSK 452
G C P+ DV F +L+ L + +DVI GMDWL I+C + VT +
Sbjct: 416 GEIAVDTACIDVPIRLRDVVFPSNLMVLIPQTLDVILGMDWLAKHRGVIDCRRREVTLTT 475
Query: 453 PVEELGREFLTAEQVKKSLDGEACVFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITEL 512
P R T +Q + + +F M L + G +P+VQ FP+VFPED+ +
Sbjct: 476 PWGSDMRA--TMDQDPRLTERAGGIFTM---LPLKG------MPIVQRFPDVFPEDLPGM 524
Query: 513 PSEREVEFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLL 572
P +R++EF IDL+PGT+PIS PYRM +EL ELKKQ+ EL EK F+RPS SP GA VL
Sbjct: 525 PPDRDIEFIIDLIPGTAPISKRPYRMPVNELEELKKQIRELQEKGFVRPSSSPWGAQVLF 584
Query: 573 VKKKDGSMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKA 632
VKKKDGSMR+CVDYR LN++TIKN+YPLPRID+ DQL GA+VFSKIDLRSGYHQ++++
Sbjct: 585 VKKKDGSMRMCVDYRSLNEVTIKNKYPLPRIDNLFDQLKGAKVFSKIDLRSGYHQLKIRT 644
Query: 633 EDISKTAFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKS 692
EDI KTAF TRYG YE++VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK
Sbjct: 645 EDIPKTAFSTRYGLYEFTVMSFGLTNAPAYFMNLMNKVFMEYLDKFVVVFIDDILIYSKD 704
Query: 693 EEEHAEHLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWE 752
EEEHAEHLR+VLQ L++++L AK SKCEFWLKEV+FLGHVIS GG++VDP+KV+AV +W+
Sbjct: 705 EEEHAEHLRLVLQKLRKHKLYAKFSKCEFWLKEVAFLGHVISAGGVAVDPAKVEAVTEWK 764
Query: 753 SPKSVFEIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
+PKSV EI++ GL YYRRFIEGFSK+A P+TQL +K
Sbjct: 765 APKSVTEIRSFLGLARYYRRFIEGFSKIARPMTQLLKK 802
>gb|AAV43966.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 1684
Score = 555 bits (1431), Expect = e-156
Identities = 313/779 (40%), Positives = 444/779 (56%), Gaps = 38/779 (4%)
Query: 13 AAIAQALATMAQVLAQGNENTAANRRNEGEAEERRLDRFLRNNPPTFKGRFDPEGAQTWV 72
A Q L +A +A N N +L FLR+ PP F +P A W+
Sbjct: 383 AVQTQILQGLAAAIAGFQHNAHGNGHPHMGNNRSKLTDFLRSRPPKFSQTVEPVEADDWL 442
Query: 73 QGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVEFLRKY 132
+ ++R + +K +H A WW N ++ W +F F +
Sbjct: 443 KDVDRKLNLVQCTPVEKTLYTSHQLRGPAADWWENYCNAHPEPTNIA-WDEFATAFRAAH 501
Query: 133 FPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPV 192
PE K+ EF LKQG SV EY ++F +L+R+ P D K KF G+
Sbjct: 502 VPESTIDMKKEEFNRLKQGNNSVNEYLSQFNKLARYAP--EEVDTDKKKIRKFLKGIAVG 559
Query: 193 IYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSKDKGKKRE 252
+ + + F +++K + +DA K + YK +N K
Sbjct: 560 MRLQLLAPDFPTFQHMINKALLLEDARKKATEEYKKRNVTSFK----------------- 602
Query: 253 SGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVAREITCYNCGE 312
S + V+C+RC +GHYA +C + G A A + +
Sbjct: 603 ----SPLGPSAVQCFRCNQMGHYARQCPQNPTNTNSGHANGSTARTPTPAAAQSRPSSQA 658
Query: 313 KGHISTKPKK-AAGKVFALNAKEVEQPDNLIRGMCFINSTPLIAIIDTGATHSFISASCV 371
G S G+V + A+ + +++ GM +NS P I + D+GA+HSFIS + V
Sbjct: 659 SGQGSRASNNFGRGRVNHIQAETAQDTPDVVMGMFSVNSVPAIVLFDSGASHSFISQAFV 718
Query: 372 ERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKNMDVIFGM 431
+R G L M++ +P T +C + + +VDF + L +++D+I GM
Sbjct: 719 KRNGWKTQNLRVPMIVHSPWRNIRATQ-ICPEVNLRIEEVDFLAKPIVLDSQSLDIILGM 777
Query: 432 DWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVKKSLDGEACVFMMFASLKVSGEKG 491
DWL I+C KS+T P +QV+ + + + L+V+ +
Sbjct: 778 DWLAKHKGQIDCAEKSITLQGP---------GGKQVRFTSNTSTASRSILTCLQVTTLES 828
Query: 492 ASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPYRMSASELGELKKQLE 551
+P+V ++P+VFPE++T +P +RE+EFAI+L PGT+PI+ PYRM+A+EL E+K+Q+E
Sbjct: 829 ---VPIVCKYPDVFPEELTSMPPDREIEFAIELAPGTAPIAKRPYRMAANELAEVKRQIE 885
Query: 552 ELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLV 611
EL K ++RPS SP GAPVLLVKKKDGS R+ +DYR LN++TIKN+YPLPRIDD DQL
Sbjct: 886 ELESKGYVRPSSSPWGAPVLLVKKKDGSERMVIDYRALNEVTIKNKYPLPRIDDLFDQLK 945
Query: 612 GAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIF 671
GA VFSKIDLRSGYHQ+++++EDI KTAF TRYG YE++VM F ++NAP FM MN+IF
Sbjct: 946 GARVFSKIDLRSGYHQLKIRSEDIPKTAFSTRYGLYEFTVMSFELTNAPAFFMNLMNKIF 1005
Query: 672 HPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGH 731
YLD+FVVVFIDDIL+YSK+EEEHAEHLR++++ L+++QL AK SKCEFWL +V+FLGH
Sbjct: 1006 MEYLDQFVVVFIDDILIYSKNEEEHAEHLRLIMEKLRDHQLFAKFSKCEFWLDQVAFLGH 1065
Query: 732 VISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
VIS G+ VDPSKV+ VL W PK+V EI++ GL GYYRRFIEGFSKLA P+T+L +K
Sbjct: 1066 VISSNGVEVDPSKVEVVLAWNPPKNVSEIRSFLGLAGYYRRFIEGFSKLARPMTELLKK 1124
>gb|AAP52378.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531578|ref|NP_920091.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
Length = 1461
Score = 554 bits (1427), Expect = e-156
Identities = 323/806 (40%), Positives = 456/806 (56%), Gaps = 70/806 (8%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
+ +AQ LA Q+ L Q +N N +N+ + +L FLR PPTF +P
Sbjct: 22 EPTLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 81
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR GG+ +TW +F
Sbjct: 82 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRA--GGEPITWQEFT 139
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV +Y F L+ + P D + KF
Sbjct: 140 AAFKKTHIPSGVVALKKREFRALNQGSRSVTKYLHDFNRLACYAPEDVCTDE--ERQEKF 197
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSK 245
GL + + + RDF LV K +D N++ G P
Sbjct: 198 LEGLNDELSYALMSTDFRDFQQLVDKAIRQED-----------NNQRPRLVTGPQVPSYP 246
Query: 246 DKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVAREI 305
GGS + + + G+ N+ N + ++ V ++ +
Sbjct: 247 Q--------GGSSSVVRPQRQFYNNNTGNRGNDNRNVVARPAATPVQNQPVRREQGSKPV 298
Query: 306 TCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLIRGMCFI 348
C+NCG+ GH + K K +V + A E + +++ G +
Sbjct: 299 ICFNCGDPGHYADKCPKPRRVKNAPAPNNFNVPAPKARVNHVAAAEAQNAPDVVLGTFPV 358
Query: 349 NSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNF 408
NS P + D+GATHSF+S S + G+ V L R ++++TP + + +T + C +
Sbjct: 359 NSIPATVLFDSGATHSFLSKSFAIKHGMEVVSLGRPLLVNTPGNQAFSTRY-CPSVTIEI 417
Query: 409 GDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVK 468
+V F L+ L K++DVI GMDWL I+C + VT +
Sbjct: 418 EEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANRKVTLT----------------- 460
Query: 469 KSLDGEACVFMMFASLKVSGEKGASV----LPVVQEFPEVFPEDITELPSEREVEFAIDL 524
S +GE F +S K GE V +P+VQ++P+VFPED+ +P +R++EF IDL
Sbjct: 461 -SSNGETVSFFA-SSPKSHGEVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDL 518
Query: 525 VPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCV 584
VPGT+PI PYRM+A+EL E+KKQ+++LL+K +IRPS SP GAPV+ V+KKD + R+CV
Sbjct: 519 VPGTNPIHKRPYRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCV 578
Query: 585 DYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRY 644
DYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTAF TRY
Sbjct: 579 DYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRY 638
Query: 645 GHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVL 704
G +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH EHLR+ L
Sbjct: 639 GLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEEHLRLAL 698
Query: 705 QVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIW 764
+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V EI++
Sbjct: 699 EKLREHQLYAKFSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEIRSFL 758
Query: 765 GLDGYYRRFIEGFSKLALPLTQLTQK 790
GL GYYRRFIE FSK+A P+T+L QK
Sbjct: 759 GLAGYYRRFIENFSKIARPMTRLLQK 784
>gb|AAT39297.1| putative gag-pol protein [Solanum demissum]
Length = 1438
Score = 554 bits (1427), Expect = e-156
Identities = 337/857 (39%), Positives = 485/857 (56%), Gaps = 86/857 (10%)
Query: 4 VEMAGGRDDAAIAQALATMAQVLAQ--GNENTAANRRNEGEAEERRLDRFLRNNPPTFKG 61
V+ G +A +A+ ++Q + G + A R EG A+ R+ FL NP +F G
Sbjct: 27 VQDQGEVSNAEFREAIRILSQAVTNQIGQQRGA---RREG-ADTSRIHEFLGMNPLSFIG 82
Query: 62 RFDPEGAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTW 121
E + +++ +++IF M D ++V LA + + A W+ KG W
Sbjct: 83 SSTTEDPENFIEELKKIFEVMHVVDTERVELAAYQLNDVARTWFDQWKGGRVKNAPPANW 142
Query: 122 AKFKVEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSK 181
A F+ FL +FP +LR K EFL LKQ +SV EY+ KF +LSR+ P + A+ M ++
Sbjct: 143 ACFEEAFLGHFFPRELREAKVREFLTLKQESLSVHEYSLKFTQLSRYAPEMVAD--MRNR 200
Query: 182 CVKFESGL--------------------RPVIY-QYMCVQEIRDFDTLVHK-CRMFDDAG 219
F +GL R ++Y Q + +++RD + +K + ++G
Sbjct: 201 MSLFVAGLSRLSSKEGRAAMLIGDMDISRLMVYVQQVEEEKLRDREEFKNKRAKSGSESG 260
Query: 220 KAKSNYYK--VQNEKKG-------------KGHGVGKPYSKDKGKKRESG-----GGSRP 259
K N + Q ++G +G G+ K + +S G S+P
Sbjct: 261 HQKGNVNRPSFQQRQRGPAPSSARAPAPRYRGEFNGQNSKDFKARPAQSSGSVAQGSSKP 320
Query: 260 SL--------------ADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVAREI 305
+ C++CG GH+ EC ++ G G++A VV ++
Sbjct: 321 PAYAKCGRNHLGICREGSIGCFKCGQNGHFMRECPK----NRQGNGGNRAQSSSVVPLDM 376
Query: 306 TCYNCGEKGHISTKPKKAAGKVFALNAK-EVEQPDNLIRGMCFINSTPLIAIIDTGATHS 364
T +G S+ A +++A+ ++ E E N++ M + + + A++D G + S
Sbjct: 377 T----APRGATSS-TGGGANRLYAITSRHEPENSPNVVTRMIKVFAFDVYALLDPGVSLS 431
Query: 365 FISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKN 424
F++ + ++ L + TP S + CP + DLV L + +
Sbjct: 432 FVTLYVANKFDVLPERLCEPFCVSTPVGESILAERVYRDCPDSINHKSTMADLVELDMVD 491
Query: 425 MDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVKK----------SLDGE 474
DVI GM+WL A S++C T+ V F P E + E+ ++ V K L +
Sbjct: 492 FDVILGMNWLHACYASLDCRTRVVKFQFPNEPV-FEWSSSSAVPKGRFISYLKARKLVSK 550
Query: 475 ACVFMMFASLKVSGE-KGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISI 533
C++ + S E +P+V+EFP+VFP+D+ +P ERE++F IDL+P T PISI
Sbjct: 551 GCIYHLVRVHDSSVEIPHFQSVPIVREFPKVFPDDLPGIPPEREIDFGIDLIPDTHPISI 610
Query: 534 APYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLT 593
PYRM+ SEL ELK+QL++LL+K FIRPSVSP GAPVL V+KKDGS+R+C+DYRQLNK+T
Sbjct: 611 PPYRMAPSELKELKEQLKDLLDKGFIRPSVSPWGAPVLFVRKKDGSLRMCIDYRQLNKVT 670
Query: 594 IKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMP 653
IKN+YPLPRIDD +QL GA FSKIDLRSGYHQ+RV+ DI KTAFRTRYGHYE+ VM
Sbjct: 671 IKNKYPLPRIDDLFNQLQGATCFSKIDLRSGYHQLRVRECDIPKTAFRTRYGHYEFLVMS 730
Query: 654 FGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLC 713
FG++NAP FM+ MNR+F PYLD FV+VFIDDILVYS++EE+HA HLR VLQ LK+N+L
Sbjct: 731 FGLTNAPAAFMDLMNRVFKPYLDTFVIVFIDDILVYSRNEEDHASHLRTVLQTLKDNKLY 790
Query: 714 AKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRF 773
AK SKCEFWLK V+FLGH++S GI VD K++A+ W P S EI++ GL GYYRRF
Sbjct: 791 AKFSKCEFWLKSVAFLGHIVSGDGIKVDTGKIEAMQNWPRPTSPTEIRSFLGLAGYYRRF 850
Query: 774 IEGFSKLALPLTQLTQK 790
+EGFS +A PLT+LTQK
Sbjct: 851 VEGFSSIASPLTKLTQK 867
>gb|AAP52384.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531590|ref|NP_920097.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881768|gb|AAM01169.1| Putative retroelement [Oryza
sativa (japonica cultivar-group)]
Length = 1449
Score = 553 bits (1425), Expect = e-156
Identities = 319/795 (40%), Positives = 451/795 (56%), Gaps = 64/795 (8%)
Query: 29 GNENTAANRRNEGE---AEERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERIFRAMVTG 85
G+ + + N NEGE A+ L N PPTF +P A W+ +E+ +
Sbjct: 9 GSGSGSGNNNNEGEPTLAQILAQQTQLINLPPTFSSTTNPVEAGDWLHAVEKKLDLIQCT 68
Query: 86 DDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFKVEFLRKYFPEDLRTKKEVE 144
+ +KV A+H A WW + + GR GG+ +TW +F F + + P + K+ E
Sbjct: 69 EQEKVSFASHQLHGPAAEWWDHFRQGRA--GGEPITWQEFTAAFKKTHIPTGVVALKKRE 126
Query: 145 FLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMCVQEIRD 204
F L QG SV EY F L+R+ P D + KF GL + + E RD
Sbjct: 127 FRALNQGSRSVTEYLHDFNRLARYAPEDVHTDE--ERQEKFLEGLNDELSYTLMSTEFRD 184
Query: 205 FDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSKDKGK-------KRESGGGS 257
F LV D A + + Y +++ +K+ + S + + GGS
Sbjct: 185 FQQLV------DKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLIPGPQVPSYPQGGS 238
Query: 258 RPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVAREITCYNCGEKGHIS 317
+ + + G+ NE N + ++ V ++ + C+NCG+ GH +
Sbjct: 239 SSVVRPQRQFYNNNTGNRGNENRNVVARPAATPVQNQPVRKEQGSKPVICFNCGDPGHYA 298
Query: 318 TKPKKAA-----------------GKVFALNAKEVEQPDNLIRGMCFINSTPLIAIIDTG 360
K K +V + A E + +++ G +NS P + D+G
Sbjct: 299 DKCPKPRHVKNVPVPNNSNVPAPKARVNHVAAAEAQNAPDVVLGTFPVNSIPATVLFDSG 358
Query: 361 ATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCL 420
ATHSF+S S + G+ V L R ++++TP + +T + C + V F L+ L
Sbjct: 359 ATHSFLSKSFATKHGMEVVSLGRPLLVNTPGNQVFSTRY-CPSVTIEIEGVPFPSSLILL 417
Query: 421 PLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLTAEQVKKSLDGEACVFMM 480
K++DVI GMDWL I+C + VT + +GE F
Sbjct: 418 ESKDLDVILGMDWLSRHRGVIDCANRKVTLTNS------------------NGETVSF-- 457
Query: 481 FASLKVS-----GEKGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAP 535
FAS S + +P+VQ++P+VFPED+ +P +R++EF IDLVPGT+PI P
Sbjct: 458 FASSPKSHGVVLNQVALQEIPIVQDYPDVFPEDLPGMPPKRDIEFRIDLVPGTNPIHKRP 517
Query: 536 YRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIK 595
YRM+A+EL E+KKQ+++LL+K +IRPS SP GAPV+ V+KKD + R+CVDYR LN++TIK
Sbjct: 518 YRMAANELAEVKKQVDDLLQKGYIRPSTSPWGAPVIFVEKKDHTQRMCVDYRALNEVTIK 577
Query: 596 NRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFG 655
N+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTAF TRYG +E +VM FG
Sbjct: 578 NKYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFTTRYGLFECTVMSFG 637
Query: 656 VSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAK 715
++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH EHLR+ L+ L+E+QL AK
Sbjct: 638 LTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHKEHLRLALEKLREHQLYAK 697
Query: 716 LSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIE 775
SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V E+++ GL GYYRRFIE
Sbjct: 698 FSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVSEVRSFLGLAGYYRRFIE 757
Query: 776 GFSKLALPLTQLTQK 790
FSK+A P+T+L QK
Sbjct: 758 NFSKIARPMTRLLQK 772
>ref|XP_493959.1| Similar to Sorghum bicolor 22 kDa kafirin cluster; polyprotein.
(AF061282) [Oryza sativa (japonica cultivar-group)]
Length = 1524
Score = 553 bits (1425), Expect = e-156
Identities = 318/770 (41%), Positives = 451/770 (58%), Gaps = 36/770 (4%)
Query: 45 ERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYW 104
+ +L FLR PPTF +P A W+ +E+ + + +KV ATH A W
Sbjct: 90 QSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLNLLQCNEQEKVAFATHQLQGPASVW 149
Query: 105 WINAKGRLELGGDVVTWAKFKVEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEE 164
W N G +V TW +F+ F + PE + +K+ EF +L+QG +V EY +F
Sbjct: 150 WDNYMVTRPAGAEV-TWTEFRHSFNKAQVPEGIVAQKKREFRSLQQGTRTVIEYLHEFNL 208
Query: 165 LSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSN 224
L+R+ P DA K KF SGL + + ++ DF+ LV D A + + +
Sbjct: 209 LARYAPEDVRTDA--EKQEKFMSGLDDELTNQLISRDYEDFEKLV------DKAIRQEEH 260
Query: 225 YYKVQNEKKGKGHGVGKPYS-KDKGKKRESGGGSRPSLADVKCYRCGTLG-HYANECMND 282
K+ ++K + S K + GG S + + Y G ++ N N+
Sbjct: 261 CNKINRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTMIIRQHRPYHPGNFNKNHHNGSHNN 320
Query: 283 LNCHKCG------KAGHKAVDC-------RVVAREITCYNCGEKGHISTK--------PK 321
H K ++V R+ + C+NC + GH K PK
Sbjct: 321 SEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPELCFNCNKPGHTVGKCPKPRRAGPK 380
Query: 322 KAAGKVFALNAKEVEQPDNLIRGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPL 381
+V +A+E + +I G +NSTP + + D+GATHSFIS GL + L
Sbjct: 381 FVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILFDSGATHSFISKRFAGAHGLSLVKL 440
Query: 382 LRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSI 441
M + TP G TT + C V + F +L+ L K++DVI GMDWL I
Sbjct: 441 KIPMRVHTPGGGMTTTHY-CPSVTVEIQGLIFPANLILLESKDLDVILGMDWLTRHRGVI 499
Query: 442 NCLTKSVTFSKPV-EELGREFLTAEQVKKSLDGEACVFMMFASLKVSGEKGASVLPVVQE 500
+C ++++ + EE+ + L + SL+ A A K + K +P+V+E
Sbjct: 500 DCASRTIKLTNAKGEEVTFQSLVPRKPGVSLNQAAGEEQEVAVEKTT--KKLEDIPIVRE 557
Query: 501 FPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIR 560
+PEVFP+D+T +P +R++EF IDLVPGT+PI PYRM A+EL E+KKQ++E L+K +IR
Sbjct: 558 YPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPYRMGANELAEVKKQVDEQLQKGYIR 617
Query: 561 PSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKID 620
PS SP GAPV+ V+KKD + R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKID
Sbjct: 618 PSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKNKYPLPRIDDLFDQLKGATVFSKID 677
Query: 621 LRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVV 680
LRSGYHQ+R++ EDI KTAF TRYG +E +VM FG++NAP FM MN++F +LD+FVV
Sbjct: 678 LRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVV 737
Query: 681 VFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISV 740
VFIDDIL+YSKSEEEH +HLR+VL+ LKE+QL AK SKC+FWLKEV FLGH+++ G++V
Sbjct: 738 VFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKFSKCDFWLKEVQFLGHIVNAQGVAV 797
Query: 741 DPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
DP+ V++V +W P++V ++++ GL GYYRRFIE FSK+A P+TQL +K
Sbjct: 798 DPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIENFSKIAKPMTQLLKK 847
>gb|AAV31373.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
Length = 2408
Score = 553 bits (1425), Expect = e-156
Identities = 323/812 (39%), Positives = 457/812 (55%), Gaps = 62/812 (7%)
Query: 12 DAAIAQALATMAQV---LAQGNENTAANRRNEGEAE--ERRLDRFLRNNPPTFKGRFDPE 66
+ +AQ LA Q+ L Q +N N +N+ + +L FLR PPTF +P
Sbjct: 22 EPTLAQILAQQTQLINLLVQQAQNQQGNNQNQNPPPPPQNKLADFLRVRPPTFSSTTNPV 81
Query: 67 GAQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAK-GRLELGGDVVTWAKFK 125
A W+ +E+ + + +KV A+H A WW + + GR E G+ +TW +F
Sbjct: 82 EAGDWLHAVEKKLDLIQCTEQEKVSFASHQLHGPAAEWWDHFRQGRAE--GEPITWQEFT 139
Query: 126 VEFLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKF 185
F + + P + K+ EF L QG SV EY F L+ + P D + KF
Sbjct: 140 AAFKKTHIPTGVVALKKREFRALNQGSRSVTEYLHDFNRLAHYAPEDVRTDE--ERQEKF 197
Query: 186 ESGLRPVIYQYMCVQEIRDFDTLVHKCRMFDDA------GKAKSNYYKVQNEKKGKGHGV 239
GL + + + RDF LV K +D K ++ +K Q + +
Sbjct: 198 LEGLNDELSYALMSTDFRDFQQLVDKAIRQEDKYNRMEQKKRRAAQFKAQQGSNQRPRLI 257
Query: 240 GKPYSKDKGKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCR 299
P + GGS + + + G+ N+ N + A ++ V
Sbjct: 258 TGPQDPSYPQ-----GGSSSVVRPQRQFYNNNTGNRGNDNRNMVARPAATPAQNQPVRKE 312
Query: 300 VVAREITCYNCGEKGHISTKPKKAA-----------------GKVFALNAKEVEQPDNLI 342
++ C+NCG+ GH + K K +V + A E + +++
Sbjct: 313 QGSKPGVCFNCGDPGHYADKCPKPRRVKNAPAPNNSNAPAPKARVNHVAAAEAQNAPDVV 372
Query: 343 RGMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCA 402
G +NS P + D+GATHSF+S S G+ V L R ++++TP + +T + C
Sbjct: 373 LGTFPVNSIPASVLFDSGATHSFLSKSFASNYGMEVISLGRHLLVNTPGNQVFSTQY-CP 431
Query: 403 KCPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFL 462
+ +V F L+ L K++DVI GMDWL I+C VT +
Sbjct: 432 SATIEIEEVPFPSSLILLESKDLDVILGMDWLSRHRGVIDCANCKVTLT----------- 480
Query: 463 TAEQVKKSLDGEACVFMMFASLKVSG----EKGASVLPVVQEFPEVFPEDITELPSEREV 518
S +GE F + +S K G + +P+VQ++P+VFPED+ +P +R++
Sbjct: 481 -------SSNGETVSFFV-SSPKYHGVILNQVALQEIPIVQDYPDVFPEDLPGMPPKRDI 532
Query: 519 EFAIDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDG 578
EF IDLVPGT+PI PYRM+A+EL E+K+Q+E+LL+K +IRPS S GAPV+ V+KKD
Sbjct: 533 EFRIDLVPGTNPIDKRPYRMAANELAEVKRQVEDLLQKGYIRPSTSLWGAPVIFVEKKDH 592
Query: 579 SMRLCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKT 638
+ R+CVDYR LN++TIKN+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KT
Sbjct: 593 TQRMCVDYRALNEVTIKNKYPLPRIDDLFDQLEGATVFSKIDLRSGYHQLRIREEDIPKT 652
Query: 639 AFRTRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAE 698
AF TRYG +E +VM FG++NAP FM MN++F YLD+FVVVFIDDIL+YSK++EEH E
Sbjct: 653 AFTTRYGLFECTVMSFGLTNAPAFFMNLMNKVFMEYLDKFVVVFIDDILIYSKTKEEHEE 712
Query: 699 HLRIVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVF 758
HLR+ L+ L+E+QL AK SKCEFWL EV FLGHVIS GG++VDPS V++VL W+ PK+V
Sbjct: 713 HLRLALEKLREHQLYAKSSKCEFWLSEVKFLGHVISSGGVAVDPSNVESVLSWKQPKTVT 772
Query: 759 EIKAIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
EI++ GL GYYRRFIE FSK+A P+T+L QK
Sbjct: 773 EIRSFLGLAGYYRRFIENFSKIARPMTRLLQK 804
>gb|AAX96450.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
(japonica cultivar-group)]
Length = 1723
Score = 552 bits (1422), Expect = e-155
Identities = 322/807 (39%), Positives = 452/807 (55%), Gaps = 47/807 (5%)
Query: 17 QALATMAQVLAQGNENTAANRRNEGEAEER---------RLDRFLRNNPPTFKGRFDPEG 67
Q +A M Q + Q ++ E + + +L FLR PPTF +P
Sbjct: 254 QMMAAMMQQMQQQHQQMHQRMMQHTEQQHQQFGPPPPQSKLPEFLRVRPPTFSSTTNPME 313
Query: 68 AQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVE 127
A W+ +E+ + D +KV ATH A WW N G +V TWA+F
Sbjct: 314 ANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEV-TWAEFCRS 372
Query: 128 FLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFES 187
F + P+ + +K+ EF L QG +V EY +F L+R+ P DA K KF +
Sbjct: 373 FRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLARYAPEDVRTDA--EKQEKFMA 430
Query: 188 GLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSKDK 247
GL + + + DF+ LV K +D + + ++K K P +
Sbjct: 431 GLDDELTNQLISGDYADFERLVDKAIRQEDQ--------RNKMDRKRKAAQFRAPQGSHQ 482
Query: 248 GKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVA----- 302
+ G P+ V+ +R ++ N H+ G++ A +A
Sbjct: 483 RPRFTPGQQGGPTTMIVRQHRPFNPSNFPQGASGSQNHHR-GQSNRGAAPRPPMAPAQSG 541
Query: 303 -----------REITCYNCGEKGHISTK--------PKKAAGKVFALNAKEVEQPDNLIR 343
+ +C+NCGE GH + K P+ +V +A+E + ++
Sbjct: 542 PLAQAKKETGAKPGSCFNCGELGHFADKCPKPRRARPRFVLARVNHASAEEAQAAPEVVL 601
Query: 344 GMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAK 403
G +NS P + D+GATHSFIS V GL L M + TP + S + SF +
Sbjct: 602 GTFPVNSIPTTVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTSVSFSPSV 661
Query: 404 CPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGREFLT 463
+ F +L+ L K++DVI GMDWL F I+C ++VT + E + +
Sbjct: 662 L-IEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTNEKGETV-VYKS 719
Query: 464 AEQVKKSLDGEACVFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFAID 523
+ K+ + + K +P+V E+PEVFPED+T +P +RE+EF ID
Sbjct: 720 PDSPKQGVSLNQIEAEIPVDTVEKNLKKLEDIPIVSEYPEVFPEDLTTMPPKREIEFRID 779
Query: 524 LVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLC 583
L PGT+PI PYRM+A+EL E+KKQ++E L+K +IRPS SP GAPV+ V+KKD + R+C
Sbjct: 780 LAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMC 839
Query: 584 VDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTR 643
VDYR LN++TIKN+YPLPRIDD DQL GA+VFSKIDLRSGYHQ+R++ EDI KTAF TR
Sbjct: 840 VDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFTTR 899
Query: 644 YGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIV 703
YG YE +VM FG++NAP FM MN++F +LD+FVVVFIDDIL+YSKSEEEH +HLR+V
Sbjct: 900 YGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLV 959
Query: 704 LQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAI 763
L+ LKE+QL AK SKC+FWL EV FLGHVI+ G++VDPS V++V +W PK+V +I++
Sbjct: 960 LEKLKEHQLYAKFSKCDFWLTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIRSF 1019
Query: 764 WGLDGYYRRFIEGFSKLALPLTQLTQK 790
GL GYYRRFIE FSK+A P+TQL +K
Sbjct: 1020 LGLAGYYRRFIENFSKIARPMTQLLKK 1046
>ref|NP_908336.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|52353682|gb|AAU44248.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|52353613|gb|AAU44179.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|20804440|dbj|BAB92137.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
gi|15128451|dbj|BAB62635.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 551 bits (1421), Expect = e-155
Identities = 322/794 (40%), Positives = 459/794 (57%), Gaps = 39/794 (4%)
Query: 24 QVLAQGNENTAANRRN---EGEAEERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERIFR 80
QVL Q + ++N + +L FLR PPTF +P A W+ +E+
Sbjct: 66 QVLQQVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLN 125
Query: 81 AMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVEFLRKYFPEDLRTK 140
+ + +KV ATH A WW N G +V TW +F+ F + PE + +
Sbjct: 126 LLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPAGAEV-TWTEFRHSFNKAQVPEGIVAQ 184
Query: 141 KEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMCVQ 200
K+ EF +L+QG +V EY +F L+R+ P DA + KF SGL + + +
Sbjct: 185 KKREFRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDA--ERQEKFLSGLDDELTNQLISR 242
Query: 201 EIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYS-KDKGKKRESGGGSRP 259
+ DF+ LV D A + + + K+ ++K + S K + GG S
Sbjct: 243 DYEDFEKLV------DKAIRQEEHCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTM 296
Query: 260 SLADVKCYRCGTLG-HYANECMNDLNCHKCG------KAGHKAVDC-------RVVAREI 305
+ + Y G+ ++ N N+ H K ++V R+ +
Sbjct: 297 IIRQHRPYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE 356
Query: 306 TCYNCGEKGHISTK--------PKKAAGKVFALNAKEVEQPDNLIRGMCFINSTPLIAII 357
C+NC + GH K PK +V +A+E + +I G +NSTP + +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 358 DTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDL 417
D+GATHSFIS GL + L M + TP G TT + C V + F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY-CPSVTVEIQGLIFPANL 475
Query: 418 VCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGR-EFLTAEQVKKSLDGEAC 476
+ L K++DVI GMDWL I+C ++++ + E+ + L + SL+ A
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVTFQSLVPRKPGISLNQAAG 535
Query: 477 VFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPY 536
A K + K +P+V+E+PEVFP+D+T +P +R++EF IDLVPGT+PI PY
Sbjct: 536 EEQEVAVEKTT--KKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPY 593
Query: 537 RMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKN 596
RM ASEL E+KKQ++E L+K +IRPS SP GAPV+ V+KKD + R+CVDYR LN++TIKN
Sbjct: 594 RMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKN 653
Query: 597 RYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGV 656
+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTAF TRYG +E +VM FG+
Sbjct: 654 KYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGL 713
Query: 657 SNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKL 716
+NAP FM MN++F +LD+FVVVFIDDIL+YSKSEEEH +HLR+VL+ LKE+QL AK
Sbjct: 714 TNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKF 773
Query: 717 SKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEG 776
SKC+FWLKEV FLGH+++ G++VDP+ V++V +W P++V ++++ GL GYYRRFIE
Sbjct: 774 SKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIEN 833
Query: 777 FSKLALPLTQLTQK 790
FSK+A P+TQL +K
Sbjct: 834 FSKIAKPMTQLLKK 847
>gb|AAP52327.1| putative retroelement [Oryza sativa (japonica cultivar-group)]
gi|37531476|ref|NP_920040.1| putative retroelement
[Oryza sativa (japonica cultivar-group)]
gi|19881618|gb|AAM01019.1| Putative retroelement [Oryza
sativa]
Length = 1475
Score = 551 bits (1420), Expect = e-155
Identities = 321/809 (39%), Positives = 453/809 (55%), Gaps = 51/809 (6%)
Query: 17 QALATMAQVLAQGNENTAANRRNEGEAEER---------RLDRFLRNNPPTFKGRFDPEG 67
Q +A M Q + Q ++ E + + +L FLR PPTF +P
Sbjct: 52 QMMAAMMQQMQQQHQQMHQRMMQHVEQQHQHFGPPPPQSKLPEFLRVRPPTFSSTTNPME 111
Query: 68 AQTWVQGMERIFRAMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVE 127
A W+ +E+ + D +KV ATH A WW N G +V TWA+F
Sbjct: 112 ANDWLHAIEKKLNLLQCNDQEKVAFATHQLQGPASAWWDNHMATRPPGTEV-TWAEFCRS 170
Query: 128 FLRKYFPEDLRTKKEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFES 187
F + P+ + +K+ EF L QG +V EY +F L+R+ P DA K KF +
Sbjct: 171 FRKAQVPDGVVAQKKREFRALHQGNRTVTEYLHEFNRLTRYAPEDVRTDA--EKQEKFMA 228
Query: 188 GLRPVIYQYMCVQEIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYSKDK 247
GL + + + DF+ LV K +D + + ++K K P +
Sbjct: 229 GLDDELTNQLISGDYADFERLVDKAIRQEDQ--------RNKMDRKRKATQFRAPQGSHQ 280
Query: 248 GKKRESGGGSRPSLADVKCYRCGTLGHYANECMNDLNCHKCGKAGHKAVDCRVVA----- 302
+ G P+ V+ YR ++ N H G++ A +A
Sbjct: 281 RPRFTPGQQGGPTTMIVRQYRPFNPSNFPQGSSGSQN-HHGGQSNRGAAPRPPMAPAQSG 339
Query: 303 -----------REITCYNCGEKGHISTK--------PKKAAGKVFALNAKEVEQPDNLIR 343
+ +C+NCGE GH + K P+ +V +A+E + ++
Sbjct: 340 PSAQAKKETGAKPGSCFNCGELGHFADKCPKPRRAGPRFIQARVNHASAEEAQAAPEVVL 399
Query: 344 GMCFINSTPLIAIIDTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAK 403
G +NS P I + D+GATHSFIS V GL+ L M + TP + S + F
Sbjct: 400 GTFPVNSIPAIVLFDSGATHSFISKKFVGMHGLIREKLSTPMRVHTPGNSSTSVQFS-PS 458
Query: 404 CPVNFGDVDFKLDLVCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGRE--F 461
+ F +L+ L K++DVI GMDWL F I+C ++VT + E G+ +
Sbjct: 459 ITIEIQRSPFLANLILLESKDLDVILGMDWLTKFKGVIDCANRTVTLTN---EKGKTVVY 515
Query: 462 LTAEQVKKSLDGEACVFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFA 521
+ + K+ + + + +P+V E+PEVFPED+T +P +RE+EF
Sbjct: 516 KSPDSPKQGVSLNQIEAEIPVDTVEKNLRKLEDIPIVSEYPEVFPEDLTTMPPKREIEFR 575
Query: 522 IDLVPGTSPISIAPYRMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMR 581
IDL PGT+PI PYRM+A+EL E+KKQ++E L+K +IRPS SP GAPV+ V+KKD + R
Sbjct: 576 IDLAPGTAPIYKRPYRMAANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKR 635
Query: 582 LCVDYRQLNKLTIKNRYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFR 641
+CVDYR LN++TIKN+YPLPRIDD DQL GA+VFSKIDLRSGYHQ+R++ EDI KTAF
Sbjct: 636 MCVDYRALNEVTIKNKYPLPRIDDLFDQLKGAKVFSKIDLRSGYHQLRIREEDIPKTAFT 695
Query: 642 TRYGHYEYSVMPFGVSNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLR 701
TRYG YE +VM FG++NAP FM MN++F +LD+FVVVFIDDIL+YSKSEEEH +HLR
Sbjct: 696 TRYGLYECTVMSFGLTNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLR 755
Query: 702 IVLQVLKENQLCAKLSKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIK 761
+VL+ LKE+QL AK SKC+FW+ EV FLGHVI+ G++VDPS V++V +W PK+V +I+
Sbjct: 756 LVLEKLKEHQLYAKFSKCDFWMTEVKFLGHVITAQGVAVDPSNVESVTKWTPPKTVSQIR 815
Query: 762 AIWGLDGYYRRFIEGFSKLALPLTQLTQK 790
+ GL GYYRRFIE FS++A P+TQL +K
Sbjct: 816 SFLGLAGYYRRFIENFSRIARPMTQLLKK 844
>ref|XP_475750.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|48843822|gb|AAT47081.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1524
Score = 550 bits (1417), Expect = e-155
Identities = 322/794 (40%), Positives = 459/794 (57%), Gaps = 39/794 (4%)
Query: 24 QVLAQGNENTAANRRN---EGEAEERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERIFR 80
QVL Q + ++N + +L FLR PPTF +P A W+ +E+
Sbjct: 66 QVLQQVQQQAQLQQQNLQFGPPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLN 125
Query: 81 AMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVEFLRKYFPEDLRTK 140
+ + +KV ATH A WW N G +V TW +F F + PE + +
Sbjct: 126 LLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPTGAEV-TWTEFCHSFNKAQVPEGIVAQ 184
Query: 141 KEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMCVQ 200
K+ EF +L+QG +V EY +F L+R+ P DA + KF SGL + + +
Sbjct: 185 KKREFRSLQQGTRTVIEYLHEFNRLARYAPEDVRTDA--ERQEKFLSGLDDELTNQLISR 242
Query: 201 EIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYS-KDKGKKRESGGGSRP 259
+ DF+ LV D A + + + K+ ++K + S K + GG S
Sbjct: 243 DYEDFEKLV------DKAIRQEEHCNKINRKRKAAQFRTPQGKSQKPRFTMGHHGGPSTM 296
Query: 260 SLADVKCYRCGTL------GHYANECMNDLNCHKCG-KAGHKAVDC-------RVVAREI 305
+ + Y G+ G + N + LN K ++V R+V +
Sbjct: 297 IIRQHRPYHPGSFNKNHHSGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLVEKPE 356
Query: 306 TCYNCGEKGHISTK--------PKKAAGKVFALNAKEVEQPDNLIRGMCFINSTPLIAII 357
C+NC + GH K PK +V +A+E + +I G +NSTP + +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 358 DTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDL 417
D+GATHSFIS GL + L M + TP G TT + C V F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY-CPSVTVEIQGSIFPANL 475
Query: 418 VCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGR-EFLTAEQVKKSLDGEAC 476
+ L K++DVI GMDWL I+C ++++ + E+ + ++ + SL+ A
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVTFQSPVPQKPRISLNQAAG 535
Query: 477 VFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPY 536
A K + K +P+V+E+PEVFP+D+T +P +R++EF IDLVPGT+PI PY
Sbjct: 536 EEQEVAVEKTT--KKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPY 593
Query: 537 RMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKN 596
RM A+EL E+KKQ++E L+K +IRPS SP GAPV+ V+KKD + R+CVDYR LN++TIKN
Sbjct: 594 RMGANELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKN 653
Query: 597 RYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGV 656
+YPLPRIDD DQL GA VFSKIDLRSGYHQ+R++ EDI KTAF TRYG +E +VM FG+
Sbjct: 654 KYPLPRIDDLFDQLKGATVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGL 713
Query: 657 SNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKL 716
+NAP FM MN++F +LD+FVVVFIDDIL+YSKSEEEH +HLR+VL+ LKE+QL AK
Sbjct: 714 TNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKF 773
Query: 717 SKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEG 776
SKC+FWLKEV FLGH+++ G++VDP+ V++V +W P++V ++++ GL GYYRRFIE
Sbjct: 774 SKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIEN 833
Query: 777 FSKLALPLTQLTQK 790
FSK+A P+TQL +K
Sbjct: 834 FSKIAKPMTQLLKK 847
>ref|XP_475471.1| putative polyprotein [Oryza sativa (japonica cultivar-group)]
gi|50080316|gb|AAT69650.1| putative polyprotein [Oryza
sativa (japonica cultivar-group)]
Length = 1458
Score = 550 bits (1417), Expect = e-155
Identities = 321/794 (40%), Positives = 458/794 (57%), Gaps = 39/794 (4%)
Query: 24 QVLAQGNENTAANRRN---EGEAEERRLDRFLRNNPPTFKGRFDPEGAQTWVQGMERIFR 80
QVL Q + ++N + +L FLR PPTF +P A W+ +E+
Sbjct: 66 QVLQQVQQQAQLQQQNLQFGSPPPQSKLLEFLRVKPPTFSSTTNPIEAHDWLHAIEKKLN 125
Query: 81 AMVTGDDQKVRLATHMFAEEAEYWWINAKGRLELGGDVVTWAKFKVEFLRKYFPEDLRTK 140
+ + +KV ATH A WW N G +V TW +F+ F + PE + +
Sbjct: 126 LLQCNEQEKVAFATHQLQGPASIWWDNYMVTRPAGAEV-TWTEFRHSFNKAQVPEGIVAQ 184
Query: 141 KEVEFLNLKQGIMSVAEYAAKFEELSRFCPYINAEDAMVSKCVKFESGLRPVIYQYMCVQ 200
K+ EF +L+QG +V EY +F L+R+ P DA + KF SGL + + +
Sbjct: 185 KKREFRSLQQGTRTVIEYLHEFNLLARYAPEDVRTDA--ERQEKFLSGLDDELTNQLISR 242
Query: 201 EIRDFDTLVHKCRMFDDAGKAKSNYYKVQNEKKGKGHGVGKPYS-KDKGKKRESGGGSRP 259
+ DF+ LV D A + + + K+ ++K + S K + GG S
Sbjct: 243 DYEDFEKLV------DKAIRQEEHCNKINRKRKAAQFRTPQGKSQKPRFTMGRHGGPSTM 296
Query: 260 SLADVKCYRCGTLG-HYANECMNDLNCHKCG------KAGHKAVDC-------RVVAREI 305
+ + Y G+ ++ N N+ H K ++V R+ +
Sbjct: 297 IIRQHRPYHPGSFNKNHHNGSHNNSEQHSLNPTPSSLKIPAQSVQPALPEQPKRLGEKPE 356
Query: 306 TCYNCGEKGHISTK--------PKKAAGKVFALNAKEVEQPDNLIRGMCFINSTPLIAII 357
C+NC + GH K PK +V +A+E + +I G +NSTP + +
Sbjct: 357 LCFNCNKPGHTVGKCPKPRRAGPKFVQARVNHASAEEAQSAPEVILGTFPVNSTPAVILF 416
Query: 358 DTGATHSFISASCVERLGLVVTPLLRGMVIDTPASGSGTTSFMCAKCPVNFGDVDFKLDL 417
D+GATHSFIS GL + L M + TP G TT + C V + F +L
Sbjct: 417 DSGATHSFISKRFAGAHGLSLVKLKIPMRVHTPGGGMTTTHY-CPSVTVEIQGLIFPANL 475
Query: 418 VCLPLKNMDVIFGMDWLLAFGVSINCLTKSVTFSKPVEELGR-EFLTAEQVKKSLDGEAC 476
+ L K++DVI GMDWL I+C ++++ + E+ + L + SL+ A
Sbjct: 476 ILLESKDLDVILGMDWLTRHRGVIDCASRTIKLTNAKGEVVTFQSLVPRKPGISLNQAAG 535
Query: 477 VFMMFASLKVSGEKGASVLPVVQEFPEVFPEDITELPSEREVEFAIDLVPGTSPISIAPY 536
A K + K +P+V+E+PEVFP+D+T +P +R++EF IDLVPGT+PI PY
Sbjct: 536 EEQEVAVEKTT--KKLEDIPIVREYPEVFPDDLTTMPPKRDIEFRIDLVPGTAPIHKRPY 593
Query: 537 RMSASELGELKKQLEELLEKQFIRPSVSPRGAPVLLVKKKDGSMRLCVDYRQLNKLTIKN 596
RM ASEL E+KKQ++E L+K +IRPS SP GAPV+ V+KKD + R+CVDYR LN++TIKN
Sbjct: 594 RMGASELAEVKKQVDEQLQKGYIRPSTSPWGAPVIFVEKKDKTKRMCVDYRALNEVTIKN 653
Query: 597 RYPLPRIDD*MDQLVGAEVFSKIDLRSGYHQIRVKAEDISKTAFRTRYGHYEYSVMPFGV 656
+YPLPRIDD DQL G VFSKIDLRSGYHQ+R++ EDI KTAF TRYG +E +VM FG+
Sbjct: 654 KYPLPRIDDLFDQLKGVTVFSKIDLRSGYHQLRIREEDIPKTAFITRYGLFECTVMSFGL 713
Query: 657 SNAPGVFMEYMNRIFHPYLDRFVVVFIDDILVYSKSEEEHAEHLRIVLQVLKENQLCAKL 716
+NAP FM MN++F +LD+FVVVFIDDIL+YSKSEEEH +HLR+VL+ LKE+QL AK
Sbjct: 714 TNAPAFFMNLMNKVFMEFLDKFVVVFIDDILIYSKSEEEHEQHLRLVLEKLKEHQLYAKF 773
Query: 717 SKCEFWLKEVSFLGHVISKGGISVDPSKVDAVLQWESPKSVFEIKAIWGLDGYYRRFIEG 776
SKC+FWLKEV FLGH+++ G++VDP+ V++V +W P++V ++++ GL GYYRRFIE
Sbjct: 774 SKCDFWLKEVQFLGHIVNAQGVAVDPANVESVTKWTPPRTVTQVRSFLGLAGYYRRFIEN 833
Query: 777 FSKLALPLTQLTQK 790
FSK+A P+TQL +K
Sbjct: 834 FSKIAKPMTQLLKK 847
Database: nr
Posted date: Jul 5, 2005 12:34 AM
Number of letters in database: 863,360,394
Number of sequences in database: 2,540,612
Lambda K H
0.321 0.138 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,344,424,017
Number of Sequences: 2540612
Number of extensions: 58521055
Number of successful extensions: 256436
Number of sequences better than 10.0: 38365
Number of HSP's better than 10.0 without gapping: 2740
Number of HSP's successfully gapped in prelim test: 35632
Number of HSP's that attempted gapping in prelim test: 179094
Number of HSP's gapped (non-prelim): 49876
length of query: 790
length of database: 863,360,394
effective HSP length: 136
effective length of query: 654
effective length of database: 517,837,162
effective search space: 338665503948
effective search space used: 338665503948
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)
Medicago: description of AC126008.1