BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.1 + phase: 0
(131 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49770 putative bHLH transcription factor (bHLH095) 65 8e-12
At2g41240 putative bHLH transcription factor (bHLH100) 34 0.019
At5g43650 putative protein 34 0.024
At1g18400 bHLH transcription like factor (bHLH044) 34 0.024
At4g28790 bHLH transcription factor like protein (bHLH023) 33 0.042
At4g17880 putative transcription factor BHLH4 33 0.042
At4g01460 putative bHLH transcription factor (bHLH057) 32 0.071
At2g22760 putative bHLH transcription factor (bHLH019) 32 0.071
At2g46810 unknown protein 32 0.092
At3g56980 putative bHLH transcription factor (bHLH039) 32 0.12
At3g43930 putative protein 31 0.16
At2g22750 putative bHLH transcription factor (bHLH018) 31 0.16
At4g28800 putative protein 31 0.21
At3g56970 putative bHLH transcription factor (bHLH038) 31 0.21
At3g25430 unknown protein 31 0.21
At5g65320 bHLH transcription factor (bHLH099) like protein 30 0.27
At5g56960 putative protein 30 0.27
At5g04150 myc - like protein 30 0.35
At4g37850 putative bHLH transcription factor (bHLH025) 30 0.35
At5g67111 putative bHLH transcription factor (bHLH073/ALCATRAZ) 30 0.46
>At1g49770 putative bHLH transcription factor (bHLH095)
Length = 296
Score = 65.5 bits (158), Expect = 8e-12
Identities = 39/103 (37%), Positives = 56/103 (53%), Gaps = 11/103 (10%)
Query: 21 LWGDLPNSDHNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEE 80
+WG + NSD + G KR++ +PL + E + ++ T +
Sbjct: 1 MWG-ISNSDDSGGGC--KRIEKEPLPSHPSHPSPEIQTT--------TVKKGKKRTKRND 49
Query: 81 KDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLPELPSKVN 123
K+ + DHE+HI TERERRKKMR+MF LHALLP+LP K +
Sbjct: 50 KNHEEESPDHEIHIWTERERRKKMRDMFSKLHALLPQLPPKAD 92
>At2g41240 putative bHLH transcription factor (bHLH100)
Length = 181
Score = 34.3 bits (77), Expect = 0.019
Identities = 17/38 (44%), Positives = 23/38 (59%)
Query: 93 HILTERERRKKMRNMFDSLHALLPELPSKVNSFSSSIS 130
H +ERERRKK+ MF SL + LP S S+++S
Sbjct: 6 HNASERERRKKINTMFSSLRSCLPPTNQTKLSVSATVS 43
>At5g43650 putative protein
Length = 247
Score = 33.9 bits (76), Expect = 0.024
Identities = 19/56 (33%), Positives = 29/56 (50%), Gaps = 12/56 (21%)
Query: 61 KRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
++NW E T EK++ R H+L ER RR+K + + +LH+LLP
Sbjct: 70 RKNW------EEKKNTVAPEKERSRR------HMLKERTRREKQKQSYLALHSLLP 113
>At1g18400 bHLH transcription like factor (bHLH044)
Length = 260
Score = 33.9 bits (76), Expect = 0.024
Identities = 26/102 (25%), Positives = 48/102 (46%), Gaps = 15/102 (14%)
Query: 27 NSDHNLGESSKKR---VDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDK 83
+SDHN+ + +KKR + T ++ G+++ ++ + G + R + EE+D+
Sbjct: 81 HSDHNIVDETKKRKALLPTLSSSETSGVSDNTNVIATET---GSLRRGKRLKKKKEEEDE 137
Query: 84 KYRDFDH---------EMHILTERERRKKMRNMFDSLHALLP 116
K R+ H + H L ER RR K+ L ++P
Sbjct: 138 KEREVVHVRARRGQATDSHSLAERVRRGKINERLRCLQDMVP 179
>At4g28790 bHLH transcription factor like protein (bHLH023)
Length = 413
Score = 33.1 bits (74), Expect = 0.042
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 24/91 (26%)
Query: 26 PNSDHNLGESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKY 85
P ++ ++ + K++ + +N+G EA S KR+ +
Sbjct: 239 PATETDITDERKRKTREETNVENQGTEEARDSTSSKRSRAAI------------------ 280
Query: 86 RDFDHEMHILTERERRKKMRNMFDSLHALLP 116
MH L+ER RR+K+ M +L LLP
Sbjct: 281 ------MHKLSERRRRQKINEMMKALQELLP 305
>At4g17880 putative transcription factor BHLH4
Length = 589
Score = 33.1 bits (74), Expect = 0.042
Identities = 23/75 (30%), Positives = 39/75 (51%), Gaps = 2/75 (2%)
Query: 52 NEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSL 111
++ EA V+K+ VV+ E K R+ + H+ ER+RR+K+ F SL
Sbjct: 377 SDLEASVAKEAESNRVVVEPEKKPRKRGRKPANGRE-EPLNHVEAERQRREKLNQRFYSL 435
Query: 112 HALLPELPSKVNSFS 126
A++P + SK++ S
Sbjct: 436 RAVVPNV-SKMDKAS 449
>At4g01460 putative bHLH transcription factor (bHLH057)
Length = 315
Score = 32.3 bits (72), Expect = 0.071
Identities = 19/57 (33%), Positives = 28/57 (48%), Gaps = 10/57 (17%)
Query: 70 RSENNITTGEEKDKKYR----------DFDHEMHILTERERRKKMRNMFDSLHALLP 116
R+EN T +EK K+ R + HI ER RR++M +SL +L+P
Sbjct: 84 RTENGAVTVKEKRKRKRTRAPKNKDEVENQRMTHIAVERNRRRQMNEHLNSLRSLMP 140
>At2g22760 putative bHLH transcription factor (bHLH019)
Length = 295
Score = 32.3 bits (72), Expect = 0.071
Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 93 HILTERERRKKMRNMFDSLHALLPEL--PSKVNSFSSSIS 130
H+L ER+RR+K+ F +L ALLP L KV +IS
Sbjct: 120 HVLAERKRREKLSEKFIALSALLPGLKKADKVTILDDAIS 159
>At2g46810 unknown protein
Length = 371
Score = 32.0 bits (71), Expect = 0.092
Identities = 21/81 (25%), Positives = 35/81 (42%), Gaps = 12/81 (14%)
Query: 48 NEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKYR------------DFDHEMHIL 95
NE I+ E P + N R NN+ + ++K+ R + HI
Sbjct: 138 NEAISNQELPFNPLENARSRRKRKNNNLASLMTREKRKRRRTKPTKNIEEIESQRMTHIA 197
Query: 96 TERERRKKMRNMFDSLHALLP 116
ER RR++M +SL +++P
Sbjct: 198 VERNRRRQMNVHLNSLRSIIP 218
>At3g56980 putative bHLH transcription factor (bHLH039)
Length = 258
Score = 31.6 bits (70), Expect = 0.12
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
Query: 54 AEAPVSKKRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHA 113
A V++ +N GV + SE N E D H +ER+RR+K+ ++F SL +
Sbjct: 47 AVTAVTQHQNSFGVSVSSEGN-----EIDNNPVVVKKLNHNASERDRRRKINSLFSSLRS 101
Query: 114 LLP 116
LP
Sbjct: 102 CLP 104
>At3g43930 putative protein
Length = 404
Score = 31.2 bits (69), Expect = 0.16
Identities = 31/94 (32%), Positives = 47/94 (49%), Gaps = 13/94 (13%)
Query: 34 ESSKKRVDT---KPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEK------DKK 84
ES+KK + +PLN + ++ +S+ + V+I S +N E K D K
Sbjct: 210 ESAKKTMGKTLIQPLNLSSLLDSISWTISEPTSTASVIIDSFSNNDDIERKSLSAFFDAK 269
Query: 85 YRD-FDHEMHILTERERRKKM-RNMFDSLHALLP 116
D F H M +LTE ER + + +N F +L LLP
Sbjct: 270 SNDSFTHSMRLLTESERMELVYKNHFITL--LLP 301
>At2g22750 putative bHLH transcription factor (bHLH018)
Length = 304
Score = 31.2 bits (69), Expect = 0.16
Identities = 14/26 (53%), Positives = 19/26 (72%)
Query: 93 HILTERERRKKMRNMFDSLHALLPEL 118
HIL ER+RR+K+ F +L AL+P L
Sbjct: 127 HILAERKRREKLTQRFVALSALIPGL 152
>At4g28800 putative protein
Length = 478
Score = 30.8 bits (68), Expect = 0.21
Identities = 30/102 (29%), Positives = 43/102 (41%), Gaps = 4/102 (3%)
Query: 30 HNLGESSKKRVDTKPLNQNEGINEAEA-PVSKKRNWGGVVIRSENNITTGEEKDK--KYR 86
H+LG K + G+ +AE PV + + E T E + + R
Sbjct: 194 HDLGRKGKAVAVEAAGTPSSGVCKAETEPVQIQPATESKLKAREETHGTEEARGSTSRKR 253
Query: 87 DFDHEMHILTERERRKKMRNMFDSLHALLPELPSKVNSFSSS 128
EMH L ER RR+K+ +L L+P +KV S S S
Sbjct: 254 SRTAEMHNLAERRRREKINEKMKTLQQLIPRC-NKVESDSVS 294
>At3g56970 putative bHLH transcription factor (bHLH038)
Length = 253
Score = 30.8 bits (68), Expect = 0.21
Identities = 21/59 (35%), Positives = 29/59 (48%), Gaps = 5/59 (8%)
Query: 58 VSKKRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
V+ +N GV + SE N E D H +ER+RRKK+ +F SL + LP
Sbjct: 46 VTHHQNSLGVSVSSEGN-----EIDNNPVVVKKLNHNASERDRRKKINTLFSSLRSCLP 99
>At3g25430 unknown protein
Length = 618
Score = 30.8 bits (68), Expect = 0.21
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Query: 79 EEKDKKYRDFDHEMHILTERERRKKMRNM---FDSLHA-LLPELPSKVNSFSSSISS 131
+E++++ R F + ++ ++ +N F S+HA L LPS V+ FSSS+SS
Sbjct: 301 KEENRRVRGFREVVDFISSSQKPVVSQNYLSDFTSIHAKFLGPLPSNVDDFSSSLSS 357
>At5g65320 bHLH transcription factor (bHLH099) like protein
Length = 296
Score = 30.4 bits (67), Expect = 0.27
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 47 QNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKYRDFDHEMHILTERERRKKMRN 106
Q + E +P+ ++ G + R + DK+ + +H I ER RRK+M +
Sbjct: 61 QKSHLTEKLSPLRERYGCGDFLSRKRRRRSEKTIVDKENQRMNH---IAVERNRRKQMNH 117
Query: 107 MFDSLHALLPELPSKVNSFSSSI 129
L +++P S+ N +S I
Sbjct: 118 FLSILKSMMPLSYSQPNDQASII 140
>At5g56960 putative protein
Length = 466
Score = 30.4 bits (67), Expect = 0.27
Identities = 11/24 (45%), Positives = 19/24 (78%)
Query: 93 HILTERERRKKMRNMFDSLHALLP 116
H+++ER+RR+K+ F +L +LLP
Sbjct: 290 HMISERKRREKLNESFQALRSLLP 313
>At5g04150 myc - like protein
Length = 240
Score = 30.0 bits (66), Expect = 0.35
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 93 HILTERERRKKMRNMFDSLHALLP 116
H +ER+RR+K+ ++ SL ALLP
Sbjct: 70 HNASERDRRRKLNALYSSLRALLP 93
>At4g37850 putative bHLH transcription factor (bHLH025)
Length = 304
Score = 30.0 bits (66), Expect = 0.35
Identities = 13/26 (50%), Positives = 19/26 (73%)
Query: 93 HILTERERRKKMRNMFDSLHALLPEL 118
HI+ ER+RR+K+ F +L AL+P L
Sbjct: 129 HIIAERKRREKLTQRFVALSALVPGL 154
>At5g67111 putative bHLH transcription factor (bHLH073/ALCATRAZ)
Length = 210
Score = 29.6 bits (65), Expect = 0.46
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 72 ENNITTGEEKDKKYRDFDHEMHILTERERRKKMRNMFDSLHALLP 116
E+ + ++++ R+ D + H L+E++RR K+ +L L+P
Sbjct: 77 EHKRSGAKQRNSLKRNIDAQFHNLSEKKRRSKINEKMKALQKLIP 121
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,263,543
Number of Sequences: 26719
Number of extensions: 138977
Number of successful extensions: 479
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 423
Number of HSP's gapped (non-prelim): 82
length of query: 131
length of database: 11,318,596
effective HSP length: 88
effective length of query: 43
effective length of database: 8,967,324
effective search space: 385594932
effective search space used: 385594932
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Medicago: description of AC148528.1