BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148483.5 + phase: 0 /pseudo
         (281 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g60170 putative protein                                             33  0.13
At3g61330 copia-type polyprotein                                       30  1.9
At3g59720 copia-type reverse transcriptase-like protein                30  1.9
At1g58140 hypothetical protein                                         30  1.9
At1g48710 hypothetical protein                                         30  1.9

>At3g60170 putative protein
          Length = 1339

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 21/67 (31%), Positives = 31/67 (45%)

Query: 27  DLETVYLVLDNFSRRIEQLCLRKILENVYHDERGIVMSTQMSTNRMFMISAPIIVPESLK 86
           +L    L L     R   + +R     VYH  +G +M T MS NRMF + A      SL 
Sbjct: 363 ELRNNLLSLGQLQERGLAILIRDGTCKVYHPSKGAIMETNMSGNRMFFLLASKPQKNSLC 422

Query: 87  LKNVKML 93
           L+  +++
Sbjct: 423 LQTEEVM 429



 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 261 ERKNRTLKNMVRSMLRSK 278
           ERKNRT+ N VRSML  +
Sbjct: 600 ERKNRTIMNAVRSMLSER 617


>At3g61330 copia-type polyprotein
          Length = 1352

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 261 ERKNRTLKNMVRSMLRSK 278
           ERKNRT+  M RSML+SK
Sbjct: 632 ERKNRTILEMARSMLKSK 649


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 261 ERKNRTLKNMVRSMLRSK 278
           ERKNRT+  M RSML+SK
Sbjct: 632 ERKNRTILEMARSMLKSK 649


>At1g58140 hypothetical protein
          Length = 1320

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 261 ERKNRTLKNMVRSMLRSK 278
           ERKNRT+  M RSML+SK
Sbjct: 632 ERKNRTILEMARSMLKSK 649


>At1g48710 hypothetical protein
          Length = 1352

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)

Query: 261 ERKNRTLKNMVRSMLRSK 278
           ERKNRT+  M RSML+SK
Sbjct: 632 ERKNRTILEMARSMLKSK 649


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.355    0.157    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,697,475
Number of Sequences: 26719
Number of extensions: 160030
Number of successful extensions: 875
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 865
Number of HSP's gapped (non-prelim): 10
length of query: 281
length of database: 11,318,596
effective HSP length: 98
effective length of query: 183
effective length of database: 8,700,134
effective search space: 1592124522
effective search space used: 1592124522
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 59 (27.3 bits)