BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148227.2 + phase: 0 /pseudo
(1075 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g13940 putative retroelement pol polyprotein 148 1e-35
At2g07010 putative retroelement pol polyprotein 140 4e-33
At2g23330 putative retroelement pol polyprotein 121 2e-27
At1g36620 hypothetical protein 121 2e-27
At2g24660 putative retroelement pol polyprotein 120 3e-27
At2g07420 putative retroelement pol polyprotein 115 1e-25
At1g70010 hypothetical protein 112 9e-25
At2g16670 putative retroelement pol polyprotein 108 2e-23
At1g47650 hypothetical protein 105 1e-22
At1g26990 polyprotein, putative 103 5e-22
At2g16000 putative retroelement pol polyprotein 103 7e-22
At2g20460 putative retroelement pol polyprotein 102 9e-22
At4g14460 retrovirus-related like polyprotein 99 1e-20
At4g17450 retrotransposon like protein 84 4e-16
At1g53810 84 4e-16
At4g10690 retrotransposon like protein 77 5e-14
At1g60020 hypothetical protein 72 2e-12
At2g17490 putative retroelement pol polyprotein 70 5e-12
At4g19790 putative LTR retrotransposon (fragment) 62 1e-09
At2g11230 putative retroelement pol polyprotein 61 4e-09
>At2g13940 putative retroelement pol polyprotein
Length = 1501
Score = 148 bits (374), Expect = 1e-35
Identities = 113/365 (30%), Positives = 165/365 (44%), Gaps = 27/365 (7%)
Query: 1 CNLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQI 60
C L+SVSKL+ +C F DT C QD S I S ++ GG+YYL D
Sbjct: 464 CTLISVSKLLKQTQCLATFTDTLCFLQDRSSKTLIGSGEERGGVYYLTDVTPA------- 516
Query: 61 SSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSSFQCEIYEFSKQHRS 120
+N D LWH RLGHPSF L + +S C++ +KQ R
Sbjct: 517 -----KIHTANVDSDQALWHQRLGHPSFSVLSSLPLFSKTSSTVTSHSCDVCFRAKQTRE 571
Query: 121 SFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*KKNQR*DKL 180
FP K + FS+IH DVWGP R+ P G L I+ D+ ++ ++
Sbjct: 572 VFPESINKTEECFSLIHCDVWGPYRV---PASCGAVYFLTIVDDYSRAVWTYLLLEKSEV 628
Query: 181 SRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITER 240
++L N + + K ++ N + +F ENGI+ Q++CV +PQQNG ER
Sbjct: 629 RQVLTNFLKYAEKQFGKTVKMVRSDNGTEFMCLSSYFRENGIIHQTSCVGTPQQNGRVER 688
Query: 241 KNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLKILSKCPY 300
K+RH+L +ARALLF G + L S S R ++L +
Sbjct: 689 KHRHILNVARALLFQASLPIKFWGESILTAAYLINRTPSSIL----SGRTPYEVL----H 740
Query: 301 FSRFAFKNIRMH----YFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFLVT 356
S+ + +R+ Y T+ + R+ +FVGY +KG+K D+ FLV+
Sbjct: 741 GSKPVYSQLRVFGSACYVHRVTRDKDKFGQRSRSCIFVGYPFGKKGWKVYDIERNEFLVS 800
Query: 357 MDVTF 361
DV F
Sbjct: 801 RDVIF 805
>At2g07010 putative retroelement pol polyprotein
Length = 1413
Score = 140 bits (353), Expect = 4e-33
Identities = 114/372 (30%), Positives = 166/372 (43%), Gaps = 41/372 (11%)
Query: 1 CNLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQI 60
C+L+SVSKL+ +C F DT C+ QD S I + ++ G+YYL D T I
Sbjct: 447 CSLISVSKLVKQIKCLALFTDTICVLQDRFSRTLIGTGEERDGVYYLTDAATTTVHKVDI 506
Query: 61 SSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHD--FSSFQCEIYEFSKQH 118
++ D LWH RLGHPSF L + LF G SS C++ +KQ
Sbjct: 507 TT------------DHALWHQRLGHPSFSVLSSL--PLFSGSSCSVSSRSCDVCFRAKQT 552
Query: 119 RSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*KKNQR*D 178
R FP + K + FS+IH DVWGP R+ P+ G L I+ DF ++
Sbjct: 553 REVFPDSSNKSTDCFSLIHCDVWGPYRV---PSSCGAVYFLTIVDDFSRSVWTYLLLAKS 609
Query: 179 KLSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGIT 238
++ +L N + K ++ N + +F E GIV Q++CV +PQQNG
Sbjct: 610 EVRSVLTNFLAYTEKQFGKSVKIIRSDNGTEFMCLSSYFKEQGIVHQTSCVGTPQQNGRV 669
Query: 239 ERKNRHLLEMARALLFFH*SSKILMG*GCINCCTL---------NKLYVISCFKP*DSSR 289
ERK+RH+L ++RALLF G + L N L
Sbjct: 670 ERKHRHILNVSRALLFQASLPIKFWGEAVMTAAYLINRTPSSIHNGLSPYELLHGCKPDY 729
Query: 290 NLLKILSKCPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLN 349
+ L++ Y R T+ + R+ +FVGY +KG+K DL+
Sbjct: 730 DQLRVFGSACYAHRV-------------TRDKDKFGERSRLCIFVGYPFGQKGWKVYDLS 776
Query: 350 SKRFLVTMDVTF 361
+ F+V+ DV F
Sbjct: 777 TNEFIVSRDVVF 788
>At2g23330 putative retroelement pol polyprotein
Length = 1496
Score = 121 bits (304), Expect = 2e-27
Identities = 106/368 (28%), Positives = 160/368 (42%), Gaps = 30/368 (8%)
Query: 1 CNLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQI 60
C L+SVSKL+ F DT C QD I + ++ G+YY TG ++
Sbjct: 434 CTLISVSKLLKQTSSIAIFTDTFCFLQDRFLRTLIGAGEEREGVYYF-----TGVLAPRV 488
Query: 61 SSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSSFQ-CEIYEFSKQHR 119
S F +S + LWH RLGHPS L + F C+ SKQ R
Sbjct: 489 HKASSDFAISGD-----LWHRRLGHPSTSVLLSLPECNRSSQGFDKIDSCDTCFRSKQTR 543
Query: 120 SSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*KKNQR*DK 179
FP+ K + FS+IH DVWGP R P+ G L ++ D+ ++ +
Sbjct: 544 EVFPISNNKTMECFSLIHGDVWGPYRT---PSTTGAVYFLTLVDDYSRSVWTYLMSSKTE 600
Query: 180 LSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITE 239
+S+++ N C +S K + N T +F +GI+ Q++CV +PQQNG E
Sbjct: 601 VSQLIKNFCAMSERQFGKQVKAFRTDNGTEFMCLTPYFQTHGILHQTSCVDTPQQNGRVE 660
Query: 240 RKNRHLLEMARALLF------FH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLK 293
RK+RH+L +ARA LF IL IN L + ++ R
Sbjct: 661 RKHRHILNVARACLFQGNLPVKFWGESILTATHLINRTPSAVLKGKTPYELLFGERPSYD 720
Query: 294 ILSKCPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRF 353
+L F + +IR + + +R+ K VF+GY +K ++ DL + +
Sbjct: 721 MLRS---FGCLCYAHIR-------PRNKDKFTSRSRKCVFIGYPHGKKAWRVYDLETGKI 770
Query: 354 LVTMDVTF 361
+ DV F
Sbjct: 771 FASRDVRF 778
>At1g36620 hypothetical protein
Length = 1152
Score = 121 bits (303), Expect = 2e-27
Identities = 114/374 (30%), Positives = 170/374 (44%), Gaps = 40/374 (10%)
Query: 1 CNLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQI 60
C L+SV++L+ + C F D C+ QD S I ++ G+Y+L+ +
Sbjct: 446 CTLISVARLLRELHCFAIFTDKVCVIQDRTSKMLIGVGTESNGVYHLQ----------RA 495
Query: 61 SSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSSFQ------CEIYEF 114
+ S V K + LWH+RLGHPS K L V P L DF S C++
Sbjct: 496 EVVATSANVVKWKTNKALWHMRLGHPSSKVLSSVLPSL---EDFDSCSSDLKTICDVCVR 552
Query: 115 SKQHRSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*KKN 174
+KQ R+SF K + FS IH DVWGP + + + G L I+ D ++
Sbjct: 553 AKQTRASFSESFNKAEECFSFIHYDVWGPYK---HASSCGAHYFLTIVDDHSRAVWIHLM 609
Query: 175 QR*DKLSRILLN*CRLSLIPLYKFSELTMELNILTQF*E-TFFFMENGIVQQSTCVSSPQ 233
+++ +L ++ K T+ N T+F +F E GIV Q +CV + Q
Sbjct: 610 LAKSEVASLLQQFIAMASRQFNK-QVKTVRSNNGTEFMSLKSYFAERGIVHQISCVYTHQ 668
Query: 234 QNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVIS-CFKP*DSSRNLL 292
QNG ERK+RH+L +AR+LLF + + L Y+I+ P +
Sbjct: 669 QNGRVERKHRHILNVARSLLF-----QAELPISFWEESVLTAAYLINRTPTPILDGKTPY 723
Query: 293 KILSKCP--YFSRFAFKNI---RMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLD 347
KIL P Y S F ++ R H T + R K +FVGY +KG++ D
Sbjct: 724 KILYSQPPSYASLRVFGSLCFARKH-----TGRLDKFQERGRKCIFVGYPHGQKGWRIYD 778
Query: 348 LNSKRFLVTMDVTF 361
+ S+ F V+ DV F
Sbjct: 779 IESQIFFVSRDVVF 792
>At2g24660 putative retroelement pol polyprotein
Length = 1156
Score = 120 bits (302), Expect = 3e-27
Identities = 104/344 (30%), Positives = 157/344 (45%), Gaps = 39/344 (11%)
Query: 28 DSISGKTIVSAKKNGGLYYLEDELETGHQLGQISSFSESFFVSNNKDDVMLWHLRLGHPS 87
D S I S ++ G+YYL D ++SS D LWH RLGHPS
Sbjct: 52 DRFSRTLIGSGEERDGVYYLTDVATAKIHTAKVSS------------DQALWHQRLGHPS 99
Query: 88 FKYLKIVFPKLFFGHDFSSFQCEIYEFSKQHRSSFPVQTYKPSKLFSIIHSDVWGPNRIN 147
F L + S C++ +KQ R FPV T K + FS+IH DVWGP R+
Sbjct: 100 FSVLSSLPVLTSSSLSVGSRSCDVCFRAKQTREVFPVSTNKSIECFSLIHCDVWGPYRV- 158
Query: 148 SYPTKDGLSPLLMIILDFIGYIY*KKNQR*DKLSRILLN*CRLSLIPLYKFSELTMELNI 207
P+ G L I+ DF ++ ++ +L N +Y + + +
Sbjct: 159 --PSSCGAVYFLTIVDDFSRAVWTYLLLAKSEVRTVLTN------FLVYTEKQFGKSVKV 210
Query: 208 LTQF*ETFF------FMENGIVQQSTCVSSPQQNGITERKNRHLLEMARALLFFH*SSKI 261
L T F F E+GIV Q++CV +PQQNG ERK+RH+L +ARA+LF +
Sbjct: 211 LRSDNGTEFMCLASYFREHGIVHQTSCVGTPQQNGRVERKHRHILNVARAILF-----QA 265
Query: 262 LMG*GCINCCTLNKLYVISCFKP*DSSRNLLKILSKCPYFSRFAFKNIRMH----YFCP* 317
+ L Y+I+ + S N L + + S+ ++++R+ Y
Sbjct: 266 SLPIQFWGEAVLTAAYLIN--RTPTSLHNGLSPY-EILHNSKPNYEHLRVFGSACYVHRA 322
Query: 318 TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFLVTMDVTF 361
++ + R+ VF+GY +KG+K D+ K FLV+ DV F
Sbjct: 323 SRDKDKFGERSRLCVFIGYPFAQKGWKVFDMEKKEFLVSRDVVF 366
>At2g07420 putative retroelement pol polyprotein
Length = 1664
Score = 115 bits (289), Expect = 1e-25
Identities = 102/369 (27%), Positives = 160/369 (42%), Gaps = 35/369 (9%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NLLSV K D C F FQD + + + GLY LED T + S
Sbjct: 374 NLLSVKKATTDLNCYAIFGPNEVHFQDIETSRVLGQGVTKDGLYVLED---TKPSVPLSS 430
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSSFQCEIYEFSKQHRSS 121
FS +N++ WH RLGHP + LK++ P F +D +CE K +S
Sbjct: 431 HFSSILGNANSES----WHARLGHPHSRALKLLLPSTSFKND----ECEACILGKHCKSV 482
Query: 122 FPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*KKNQR*DKLS 181
FP + K F +IHSDVW + +++ + I + + + D++
Sbjct: 483 FPKSSTIYEKCFDLIHSDVW----TSPCLSRENHKYFVTFIDEKSKFTWFTLLPSKDRVL 538
Query: 182 RILLN*CRLSLIPLYKFSELTMELNIL--------TQF*ETFFFMENGIVQQSTCVSSPQ 233
N Y + ++ IL T ++GI+ Q++C +PQ
Sbjct: 539 EAFTN------FQTYVTNHYDAKIKILRSDNRGEYTSHAFKQHLNKHGIIHQTSCPYTPQ 592
Query: 234 QNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLK 293
QNG+ ERKNRHL+E+ R ++F K G ++ C L DSS +
Sbjct: 593 QNGVAERKNRHLMEVRRVMMFHTNVPKHFWIDGVVSACYLINQTPTKILL--DSSP--FE 648
Query: 294 ILSKC-PYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKR 352
+L+K P+ + Q N+ +++K +F+GYS +KGYKC L +++
Sbjct: 649 VLNKVKPFINHLRVFGCVCFVLISGEQRNKLQ-PKSTKGMFIGYSINQKGYKCYVLETRK 707
Query: 353 FLVTMDVTF 361
L++ DV F
Sbjct: 708 VLISRDVKF 716
>At1g70010 hypothetical protein
Length = 1315
Score = 112 bits (281), Expect = 9e-25
Identities = 125/479 (26%), Positives = 197/479 (41%), Gaps = 96/479 (20%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NLLSVS L C+ F +T C+ QD+ + K+ LY ++ L++ G S
Sbjct: 337 NLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVGMGKQVANLYIVD--LDSLSHPGTDS 394
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSS--FQCEIYEFSKQHR 119
S + + S++ LWH RLGHPS + L+ + L F ++ F C + SKQ
Sbjct: 395 SITVASVTSHD-----LWHKRLGHPSVQKLQPMSSLLSFPKQKNNTDFHCRVCHISKQKH 449
Query: 120 SSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKNQR* 177
F K S+ F +IH D WGP S T DG L I+ D+ ++Y +N+
Sbjct: 450 LPFVSHNNKSSRPFDLIHIDTWGP---FSVQTHDGYRYFLTIVDDYSRATWVYLLRNK-- 504
Query: 178 DKLSRILLN*CRLSLIPLYKF--------------SELTMELNILTQF*ETFFFMENGIV 223
S + L++IP + S+ ELN T F+ GIV
Sbjct: 505 ---SDV------LTVIPTFVTMVENQFETTIKGVRSDNAPELNF------TQFYHSKGIV 549
Query: 224 QQSTCVSSPQQNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCF- 282
+C +PQQN + ERK++H+L +AR+L F S I + C L +Y+I+
Sbjct: 550 PYHSCPETPQQNSVVERKHQHILNVARSLFF---QSHIPI--SYWGDCILTAVYLINRLP 604
Query: 283 KP*DSSRNLLKILSK-CPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRK 341
P + ++L+K P + + Y + + RA F+GY K
Sbjct: 605 APILEDKCPFEVLTKTVPTYDHIKVFGC-LCYASTSPKDRHKFSPRAKACAFIGYPSGFK 663
Query: 342 GYKCLDLNSKRFLVTMDVTFF*K*TFFFRTIIFKGGNQMKIHLIFFEDLILFENMFMSHS 401
GYK LDL + +V+ H++F E+L F +S
Sbjct: 664 GYKLLDLETHSIIVSR-------------------------HVVFHEELFPFLGSDLSQE 698
Query: 402 SRPFVSKENAPDNVSEHTPSMSEDVTKLVATNQNSNNDSLEPNDNQELIQMSLHEHPYN 460
+ F N TP M Q ++D + P+D+ +++ +P N
Sbjct: 699 EQNFFPDLNP-------TPPM-----------QRQSSDHVNPSDSSSSVEILPSANPTN 739
>At2g16670 putative retroelement pol polyprotein
Length = 1333
Score = 108 bits (270), Expect = 2e-23
Identities = 98/375 (26%), Positives = 164/375 (43%), Gaps = 48/375 (12%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
+L+S+ +L+ + RC D + QD S + + ++ GG ++ +
Sbjct: 327 DLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAGRRVGGTFHFRS-----------T 375
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIV-FPKLFFGHDFSSFQCEIYEFSKQHRS 120
+ S V K+ LWH R+GHP+ + + ++ + + C++ +KQ R+
Sbjct: 376 EIAASVTVKEEKN-YELWHSRMGHPAARVVSLIPESSVSVSSTHLNKACDVCHRAKQTRN 434
Query: 121 SFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIG----YIY*KKNQR 176
SFP+ K ++F +I+ D+WGP R P+ G L II D+ Y+ K++
Sbjct: 435 SFPLSINKTLRIFELIYCDLWGPYRT---PSHTGARYFLTIIDDYSRGVWLYLLNDKSEA 491
Query: 177 *DKLSRILLN*CRLSLIPLYKF-SELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQN 235
L R + + S+ E LT+ FF E G++ + +CV++P++N
Sbjct: 492 PCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLCLTK-----FFQEQGVIHERSCVATPERN 546
Query: 236 GITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLKIL 295
ERK+RHLL +ARAL F G C L Y+I +R +L
Sbjct: 547 DRVERKHRHLLNVARALRFQANLPIQFWG-----ECVLTAAYLI--------NRTPSSVL 593
Query: 296 SKCPYFSRFAFKNIRMHY------FCP*TQTNR---QT*TRASKRVFVGYSPTRKGYKCL 346
+ + R K R + C NR + R+ + VFVGY +KG++
Sbjct: 594 NDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRLF 653
Query: 347 DLNSKRFLVTMDVTF 361
DL F V+ DV F
Sbjct: 654 DLEQNEFFVSRDVVF 668
>At1g47650 hypothetical protein
Length = 1409
Score = 105 bits (262), Expect = 1e-22
Identities = 102/378 (26%), Positives = 161/378 (41%), Gaps = 70/378 (18%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NL+S+S L D + F T C QD I + + ++ LY L+ E
Sbjct: 396 NLISISSLTDDIGSRVIFDKTSCEIQDPIKARMLGQGRRIANLYVLDIE----------- 444
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGH--DFSSFQCEIYEFSKQHR 119
+ N D+ +WH RLGH S + L ++ L + S C + +KQ +
Sbjct: 445 ---DPIVSVNAVVDISMWHRRLGHASLQRLDVISDSLGTTKPKNKGSDYCHVCHLAKQRK 501
Query: 120 SSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKNQR* 177
FP Q +++F ++H D+WGP + T DG L I+ D +IY +N+
Sbjct: 502 LPFPSQNKVCNEIFDLLHIDIWGPFSVE---TVDGYKYFLTIVDDHSRATWIYLLRNK-- 556
Query: 178 DKLSRILLN*CRLSLIPL--------YKFSELTMELNILTQF*ETFFFMENGIVQQSTCV 229
S +L ++ P YK + + + T + + GIV +C
Sbjct: 557 ---SEVL------TVFPAFIEQVENQYKVRVKAVRSDNAPELKFTSLYQQKGIVSFHSCP 607
Query: 230 SSPQQNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSR 289
+P+QN + ERK++H+L ++RAL+F L G C L +++I +R
Sbjct: 608 ETPEQNLVVERKHQHILNVSRALMFQSQVPLSLWG-----DCVLTAVFLI--------NR 654
Query: 290 NLLKILS-KCPY-----FSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGY 343
++LS K PY F F R H F P R+ VF+GY KGY
Sbjct: 655 TPSQLLSNKTPYEILTGTVPFYFAKKR-HKFQP----------RSKACVFLGYPAGYKGY 703
Query: 344 KCLDLNSKRFLVTMDVTF 361
K +DL S ++ +V F
Sbjct: 704 KLMDLESHTVFISRNVVF 721
>At1g26990 polyprotein, putative
Length = 1436
Score = 103 bits (257), Expect = 5e-22
Identities = 119/467 (25%), Positives = 193/467 (40%), Gaps = 56/467 (11%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NLLSVS L + + F C+ Q + + G LY L + L +S
Sbjct: 485 NLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLD----KSLVDVS 540
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLK-----IVFPKLFFGHDFSSFQCEIYEFSK 116
SF S+ K++ +WH RLGHPSF + ++ PK D S C + SK
Sbjct: 541 SFPGKSVCSSVKNESEMWHKRLGHPSFAKIDTLSDVLMLPKQKINKD--SSHCHVCHLSK 598
Query: 117 QHRSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKN 174
Q F + K F ++H D WGP S PT D L I+ DF +IY K
Sbjct: 599 QKHLPFKSVNHIREKAFELVHIDTWGP---FSVPTVDSYRYFLTIVDDFSRATWIYLLK- 654
Query: 175 QR*DKLSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQ 234
Q+ D L+ + + ++ + Y ++ + + F + GI C +P+Q
Sbjct: 655 QKSDVLT-VFPSFLKM-VETQYHTKVCSVRSDNAHELKFNELFAKEGIKADHPCPETPEQ 712
Query: 235 NGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVIS-CFKP*DSSRNLLK 293
N + ERK++HLL +ARAL+F G C L +++I+ P ++ +
Sbjct: 713 NFVVERKHQHLLNVARALMFQSGIPLEYWG-----DCVLTAVFLINRLLSPVINNETPYE 767
Query: 294 ILS--KCPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSK 351
L+ K Y S AF + P ++T RA +F+GY KGYK LD+ +
Sbjct: 768 RLTKGKPDYSSLKAFGCLCYCSTSPKSRTKFD--PRAKACIFLGYPMGYKGYKLLDIETY 825
Query: 352 RFLVTMDVTFF*K*TFFFRTIIFKGGNQMKIHLIFFEDLILFENMFMSHSSRPFVSKENA 411
++ H+IF+ED+ F + ++ +++ F
Sbjct: 826 SVSISR-------------------------HVIFYEDIFPFASSNITDAAKDFFPHIYL 860
Query: 412 P-DNVSEHTPSMSEDVTKLVATNQNSNNDSLEPNDNQELIQMSLHEH 457
P N EH P + + + + S++ P++ + Q L H
Sbjct: 861 PAPNNDEHLP-LVQSSSDAPHNHDESSSMIFVPSEPKSTRQRKLPSH 906
>At2g16000 putative retroelement pol polyprotein
Length = 1454
Score = 103 bits (256), Expect = 7e-22
Identities = 104/384 (27%), Positives = 166/384 (43%), Gaps = 68/384 (17%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NL+S+S L D + F C QD I G+ + ++ LY L+ G Q
Sbjct: 495 NLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLLD----VGDQ----- 545
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFF------GHDFSSFQCEIYEFS 115
S S + V D+ +WH RLGH S + L + L G DF C + +
Sbjct: 546 SISVNAVV-----DISMWHRRLGHASLQRLDAISDSLGTTRHKNKGSDF----CHVCHLA 596
Query: 116 KQHRSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KK 173
KQ + SFP ++F ++H DVWGP S T +G L I+ D ++Y K
Sbjct: 597 KQRKLSFPTSNKVCKEIFDLLHIDVWGP---FSVETVEGYKYFLTIVDDHSRATWMYLLK 653
Query: 174 NQR*DKLSRILLN*CRLSLIPL--------YKFSELTMELNILTQF*ETFFFMENGIVQQ 225
+ S + L++ P YK + + + T F+ E GIV
Sbjct: 654 TK-----SEV------LTVFPAFIQQVENQYKVKVKAVRSDNAPELKFTSFYAEKGIVSF 702
Query: 226 STCVSSPQQNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP* 285
+C +P+QN + ERK++H+L +ARAL+F L G C L +++I+
Sbjct: 703 HSCPETPEQNSVVERKHQHILNVARALMFQSQVPLSLWG-----DCVLTAVFLIN----- 752
Query: 286 DSSRNLLKILSKCPY----FSRFAFKNIR----MHYFCP*TQTNRQT*TRASKRVFVGYS 337
+ LL ++K PY + ++ +R + Y + + R+ +F+GY
Sbjct: 753 RTPSQLL--MNKTPYEILTGTAPVYEQLRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYP 810
Query: 338 PTRKGYKCLDLNSKRFLVTMDVTF 361
KGYK +DL S ++ +V F
Sbjct: 811 SGYKGYKLMDLESNTVFISRNVQF 834
>At2g20460 putative retroelement pol polyprotein
Length = 1461
Score = 102 bits (255), Expect = 9e-22
Identities = 104/367 (28%), Positives = 164/367 (44%), Gaps = 34/367 (9%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NL+S+S L D + F + C QD G T+ K+ G LY L+ +
Sbjct: 506 NLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLDTQ----------- 554
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGH--DFSSFQCEIYEFSKQHR 119
S + V N DV +WH RLGHPSF L + L + S C + +KQ +
Sbjct: 555 --SPAISV-NAVVDVSVWHKRLGHPSFSRLDSLSEVLGTTRHKNKKSAYCHVCHLAKQKK 611
Query: 120 SSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKNQR* 177
SFP + F ++H DVWGP S T +G L I+ D +IY K+
Sbjct: 612 LSFPSANNICNSTFELLHIDVWGP---FSVETVEGYKYFLTIVDDHSRATWIYLLKS--- 665
Query: 178 DKLSRILLN*CRLSLIP-LYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNG 236
K + + + L+ Y ++ + + T F+ GIV +C +P+QN
Sbjct: 666 -KSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELAFTEFYKAKGIVSFHSCPETPEQNS 724
Query: 237 ITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVIS-CFKP*DSSRNLLKIL 295
+ ERK++H+L +ARAL+F S G C L +++I+ S++ ++L
Sbjct: 725 VVERKHQHILNVARALMFQSNMSLPYWG-----DCVLTAVFLINRTPSALLSNKTPFEVL 779
Query: 296 S-KCPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFL 354
+ K P +S+ + Y ++ + R+ VF+GY KGYK LDL S
Sbjct: 780 TGKLPDYSQLKTFGC-LCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVH 838
Query: 355 VTMDVTF 361
++ +V F
Sbjct: 839 ISRNVEF 845
>At4g14460 retrovirus-related like polyprotein
Length = 1489
Score = 99.0 bits (245), Expect = 1e-20
Identities = 104/364 (28%), Positives = 158/364 (42%), Gaps = 43/364 (11%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NL+SVS L+ C HF+ CL Q+ G I G LY+ LET + S
Sbjct: 529 NLMSVSSLVKTISCSAHFYVDCCLIQELSQGLMI----GRGRLYHNLYILETENTSPSTS 584
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFSSFQCEIYEFSKQHRSS 121
+ + F + +D LWH RLGHPS +V KL R +
Sbjct: 585 TPAACLFTGSVLNDGHLWHQRLGHPS----SVVLQKL-------------------KRLA 621
Query: 122 FPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKNQR*DK 179
+ S F ++H D+WGP I S +G L ++ D ++Y +N++
Sbjct: 622 YISHNNLASNPFDLVHLDIWGPFSIESI---EGFRYFLTVVDDCTRTTWVYMLRNKK--D 676
Query: 180 LSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITE 239
+S + +L + + + + + T E+G++ +C +PQQN + E
Sbjct: 677 VSSVFPEFIKL-VSTQFNAKIKAIRSDNAPELGFTEIVKEHGMLHHFSCAYTPQQNSVVE 735
Query: 240 RKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLK-ILSKC 298
RK++H+L +ARALLF S I M +C T + P ++++ + IL+K
Sbjct: 736 RKHQHILNVARALLF---QSNIPMQ-YWSDCVTTAVFLINRLPSPLLNNKSPYELILNKQ 791
Query: 299 PYFSRFAFKNIRMHYFCP*TQTNRQT*T-RASKRVFVGYSPTRKGYKCLDLNSKRFLVTM 357
P +S KN F R T RA VF+GY KGYK LDL S V+
Sbjct: 792 PDYS--LLKNFGCLCFVSTNAHERTKFTPRARACVFLGYPSGYKGYKVLDLESHSVTVSR 849
Query: 358 DVTF 361
+V F
Sbjct: 850 NVVF 853
>At4g17450 retrotransposon like protein
Length = 1433
Score = 84.0 bits (206), Expect = 4e-16
Identities = 94/345 (27%), Positives = 137/345 (39%), Gaps = 63/345 (18%)
Query: 42 GGLYYLEDELETGHQL---GQISSFSESFFVSNNKDDVMLWHLRLGHPSFK-------YL 91
G LY L D E H + G S E S+ D + WH RLGHP++ L
Sbjct: 514 GNLYVL-DFNENNHTVSLKGTTSMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVL 572
Query: 92 KIVFPKLFFGHDFSSFQCEIYEFSKQHRSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPT 151
+ K+ H C + SKQ SF + S F ++H D WGP S PT
Sbjct: 573 NLKVKKINKEHSPVCHVCHVCHLSKQKHLSFQSRQNMCSAAFDLVHIDTWGP---FSVPT 629
Query: 152 KDGL--------SPLLMIILDFIGYIY*KKNQR*DKLSRILLN*CRLSLIPLYKFSELTM 203
D S +L + FI ++ Q KL + R KF++L
Sbjct: 630 NDATWIYLLKNKSDVLHVFPAFINMVH---TQYQTKLKSV-----RSDNAHELKFTDL-- 679
Query: 204 ELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITERKNRHLLEMARALLFFH*SSKILM 263
F +GIV +C +P+QN + ERK++H+L +ARALLF
Sbjct: 680 -------------FAAHGIVAYHSCPETPEQNSVVERKHQHILNVARALLFQSNIPLEFW 726
Query: 264 G*GCINCCT--LNKL--YVISCFKP*DSSRNLLKILSKCPYFSRFAFKNI---RMHYFCP 316
G C+ +N+L V++ P + +N+ F + + + H F P
Sbjct: 727 G-DCVLTAVFLINRLPTPVLNNKSPYEKLKNIPPAYESLKTFGCLCYSSTSPKQRHKFEP 785
Query: 317 *TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFLVTMDVTF 361
RA VF+GY KGYK LD+ + ++ V F
Sbjct: 786 ----------RARACVFLGYPLGYKGYKLLDIETHAVSISRHVIF 820
>At1g53810
Length = 1522
Score = 84.0 bits (206), Expect = 4e-16
Identities = 96/380 (25%), Positives = 159/380 (41%), Gaps = 53/380 (13%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLED-ELETGHQLGQI 60
+LLSVSKL D C F D + K +V + GLY LE+ +L+ + Q
Sbjct: 394 SLLSVSKLTSDYPCSVEFDADSVRINDKATKKLLVMGRNRDGLYSLEEPKLQVLYSTRQN 453
Query: 61 SSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPK--LFFGHDFSSFQCEIYEFSKQH 118
S+ SE +WH RLGH + + L + + + CE K
Sbjct: 454 SASSE------------VWHRRLGHANAEVLHQLASSKSIIIINKVVKTVCEACHLGKST 501
Query: 119 RSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYI-Y*KKNQR* 177
R F + T+ S+ IH D+WGP+ +S G ++ I + + + +
Sbjct: 502 RLPFMLSTFNASRPLERIHCDLWGPSPTSSV---QGFRYYVVFIDHYSRFTWFYPLKLKS 558
Query: 178 DKLSRILLN*CRLSLIPLYKFSELTMELNILT-----QF*ETFF---FMENGIVQQSTCV 229
D S + + ++L ++ I +F + F ++GI Q +C
Sbjct: 559 DFFSTFV-------MFQKLVENQLGHKIKIFQCDGGGEFISSQFLKHLQDHGIQQNMSCP 611
Query: 230 SSPQQNGITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSR 289
+PQQNG+ ERK+RH++E+ +++F SK+ + + T N +VI+
Sbjct: 612 YTPQQNGMAERKHRHIVELGLSMIF---QSKLPLKYWLESFFTAN--FVINLLPTSSLDN 666
Query: 290 N---LLKILSKCPYFSRFAFKNIRMHYFCP*TQTNRQT*T-----RASKRVFVGYSPTRK 341
N K+ K P +S + C T R + R+ K VF+GY+ K
Sbjct: 667 NESPYQKLYGKAPEYSALRV------FGCACYPTLRDYASTKFDPRSLKCVFLGYNEKYK 720
Query: 342 GYKCLDLNSKRFLVTMDVTF 361
GY+CL + R ++ V F
Sbjct: 721 GYRCLYPPTGRIYISRHVVF 740
>At4g10690 retrotransposon like protein
Length = 1515
Score = 77.0 bits (188), Expect = 5e-14
Identities = 90/367 (24%), Positives = 151/367 (40%), Gaps = 28/367 (7%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
+LLSVSKL D C F + +D + + + K+ GLY L+D
Sbjct: 392 SLLSVSKLTDDYPCSFTFDSDSVVIKDKRTQQLLTQGNKHKGLYVLKD-----------V 440
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLK-IVFPKLFFGHDFSSFQCEIYEFSKQHRS 120
F + D +WH RLGHP+ + L+ ++ K + SS CE + K R
Sbjct: 441 PFQTYYSTRQQSSDDEVWHQRLGHPNKEVLQHLIKTKAIVVNKTSSNMCEACQMGKVCRL 500
Query: 121 SFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYI-Y*KKNQR*DK 179
F + S+ IH D+WGP + S G ++ I ++ + + + D
Sbjct: 501 PFVASEFVSSRPLERIHCDLWGPAPVTS---AQGFQYYVIFIDNYSRFTWFYPLKLKSDF 557
Query: 180 LSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFF---FMENGIVQQSTCVSSPQQNG 236
S +L + + Y+ + + +F F GI Q +C +PQQNG
Sbjct: 558 FSVFVL--FQQLVENQYQHKIAMFQCDGGGEFVSYKFVAHLASCGIKQLISCPHTPQQNG 615
Query: 237 ITERKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFKP*DSSRNLLKILS 296
I ER++R+L E+ +L+F SK+ T N L + +++ ++L
Sbjct: 616 IAERRHRYLTELGLSLMF---HSKVPHKLWVEAFFTSNFLSNLLPSSTLSDNKSPYEMLH 672
Query: 297 KCP--YFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFL 354
P Y + F + Y P + ++ VF+GY+ KGY+CL + +
Sbjct: 673 GTPPVYTALRVFGSACYPYLRP--YAKNKFDPKSLLCVFLGYNNKYKGYRCLHPPTGKVY 730
Query: 355 VTMDVTF 361
+ V F
Sbjct: 731 ICRHVLF 737
>At1g60020 hypothetical protein
Length = 1194
Score = 71.6 bits (174), Expect = 2e-12
Identities = 90/377 (23%), Positives = 146/377 (37%), Gaps = 48/377 (12%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQLGQIS 61
NL+SV ++ + FF H +D +G ++ + LY
Sbjct: 356 NLISVYRMCNANKVSVEFFPAHFQVKDLKTGVQLLQGRTKDELYEWPVNPPKP------- 408
Query: 62 SFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFGHDFS---SFQCEIYEFSKQH 118
S F + K D+ WH RLGHPS LK+V + S F C +K H
Sbjct: 409 --SSHFTTTTPKTDLTSWHSRLGHPSLSTLKVVVSQFSLPVSNSLQKQFNCSDCLLNKTH 466
Query: 119 RSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGY--IY*KKNQR 176
+ F T ++ ++ D+W + + D L+I+ + Y Y K +
Sbjct: 467 KLPFHTNTITSTQPLEYLYIDLW----TSPIVSIDNFKYYLVIVDHYTRYSWFYPIKQKS 522
Query: 177 *DK-----LSRILLN*CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSS 231
K ++ N + +I LY S+ E L F NGI +T +
Sbjct: 523 HVKDVFMTFKALVANKFQRKIIHLY--SDNGGEFIALRS-----FLSSNGITHLTTPPHT 575
Query: 232 PQQNGITERKNRHLLEMARALL------FFH*SSKILMG*GCINCCTLNKLYVISCFKP* 285
P+ NGI+ERK+RH++E LL + S + IN + + + IS +K
Sbjct: 576 PEHNGISERKHRHIVETGLTLLGQASMPKSYWSYAFTIAIYLINRMSSDVIGGISPYK-- 633
Query: 286 DSSRNLLKILSKCP-YFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYK 344
++ + P Y F + + P T + R + VF+GYS T+ Y
Sbjct: 634 -------RLFGQAPNYLKLRVFGCLCFPWLRP--YTTHKLDDRPAPCVFLGYSQTQSAYL 684
Query: 345 CLDLNSKRFLVTMDVTF 361
CL+ + R + V F
Sbjct: 685 CLNRTTGRVYTSRHVQF 701
>At2g17490 putative retroelement pol polyprotein
Length = 822
Score = 70.5 bits (171), Expect = 5e-12
Identities = 94/365 (25%), Positives = 155/365 (41%), Gaps = 52/365 (14%)
Query: 32 GKTIVSAKK---NGGLYYLEDELETGH-----QLGQISSFSESFFVS--NNKDDVM---- 77
GK ++S + NG L++ T H ++G++ ++SF + +N++ M
Sbjct: 95 GKNLLSVPQMIINGYQVTLKNNYCTIHDSARKKIGEVEMVNKSFHLRWLSNEETAMVAKD 154
Query: 78 ----LWHLRLGHPSFKYLKIVFPKLFFG----HDFSSFQCEIYEFSKQHRSSFPVQTYKP 129
LWH RLGH LKI+ K + +CE SK R FP ++
Sbjct: 155 EATELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVEEGKCESCILSKHSRDPFPKESETR 214
Query: 130 SK-LFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*KKN-----QR*DKLS 181
+K +IHSDV GP + +S +G +L I D + ++Y K Q K
Sbjct: 215 AKHKLELIHSDVCGPMQNSSI---NGSRYILTFIDDATRMVWVYFLKAKSEVFQTFKKFK 271
Query: 182 RILLN*--CRLSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITE 239
++ N CR+ + + + +E + +F E F NGI +Q T SPQQN ++E
Sbjct: 272 NLVENNANCRIKKLRIDRGTEYLSK-----EFSE--FLEGNGIERQLTAAYSPQQNEVSE 324
Query: 240 RKNRHLLEMARALLFFH*SSKILMG*GCINCCTLNKLYVISCFK---P*DSSRNLLKILS 296
R+NR L+EMARA++ L K P ++ + +S
Sbjct: 325 RRNRSLVEMARAMIKAKDLPLKLWAEAVHVAAYAQNRTPTRTLKNKTPLEAWSDSKPSVS 384
Query: 297 KCPYFSRFAFKNIRMHYFCP*TQTNRQT*TRASKRVFVGYSPTRKGYKCLDLNSKRFLVT 356
F + +I + R+ ++ + +FVGYS KGY+ L + ++
Sbjct: 385 HMKVFGSICYVHIP-------DEKRRKWDDKSKRAIFVGYSSQTKGYRVYLLKENKIDIS 437
Query: 357 MDVTF 361
DV F
Sbjct: 438 RDVIF 442
>At4g19790 putative LTR retrotransposon (fragment)
Length = 281
Score = 62.4 bits (150), Expect = 1e-09
Identities = 56/183 (30%), Positives = 77/183 (41%), Gaps = 13/183 (7%)
Query: 2 NLLSVSKLIWDKRCQTHFFDTHCLFQDSISGKTIVSAKKNGGLYYLEDELETGHQL---G 58
NL+SVS L + + F Q+ I + G LY L D E H + G
Sbjct: 67 NLISVSVLTKFLKTKVSFTSDEFFVQELTKELMIGRGSEVGNLYVL-DFNENNHIVSLKG 125
Query: 59 QISSFSESFFVSNNKDDVMLWHLRLGHPSFKYLKIVFPKLFFG----HDFSSFQCEIYEF 114
S E S+ D + WH RLGHP++ + ++ L + S C +
Sbjct: 126 TASMCPEFSVCSSVVVDSVTWHKRLGHPAYSKIDLLSDVLNLKDKKINKEHSPVCHVCHL 185
Query: 115 SKQHRSSFPVQTYKPSKLFSIIHSDVWGPNRINSYPTKDGLSPLLMIILDF--IGYIY*K 172
SKQ SF + S F ++H D WGP S PT DG L I+ DF +IY
Sbjct: 186 SKQKHLSFQYRQNMCSAAFDLVHIDTWGP---FSVPTNDGFKYFLTIVDDFSRATWIYLL 242
Query: 173 KNQ 175
KN+
Sbjct: 243 KNK 245
>At2g11230 putative retroelement pol polyprotein
Length = 962
Score = 60.8 bits (146), Expect = 4e-09
Identities = 54/184 (29%), Positives = 89/184 (48%), Gaps = 14/184 (7%)
Query: 79 WHLRLGHPSFKYLKIVFPK-LFFGHDFSSFQ---CEIYEFSKQHRSSFPVQT-YKPSKLF 133
WH RL H + +K + K L G + C++ F KQ R FP T Y+ +K+
Sbjct: 753 WHSRLRHTNLDTIKSMIQKELVRGIPHVKIEKEVCDLCLFGKQSRQVFPQGTSYRAAKIL 812
Query: 134 SIIHSDVWGPNRINSYPTKDGLSPLLMIILDFIGYIY*----KKNQR*DKLSRILLN*CR 189
++H D+ GP +++ G + +II D Y++ +K+ +K + +
Sbjct: 813 ELVHGDLCGPITPSTHA---GNKYIFVIIDDKSRYMWTALLKEKSDSFNKFKQFRALVEQ 869
Query: 190 LSLIPLYKFSELTMELNILTQF*ETFFFMENGIVQQSTCVSSPQQNGITERKNRHLLEMA 249
+ I + F IL +F T F E+GI + T SPQQNG+ ER+NR L+ M
Sbjct: 870 ETRIKIQTFRTNRGGEFILHEF--TKFCEESGIKRHLTAPYSPQQNGVVERRNRTLMGMT 927
Query: 250 RALL 253
R+++
Sbjct: 928 RSVM 931
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.355 0.158 0.554
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,876,412
Number of Sequences: 26719
Number of extensions: 817916
Number of successful extensions: 4390
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4089
Number of HSP's gapped (non-prelim): 211
length of query: 1075
length of database: 11,318,596
effective HSP length: 110
effective length of query: 965
effective length of database: 8,379,506
effective search space: 8086223290
effective search space used: 8086223290
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148227.2