BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147875.9 + phase: 0 
         (122 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g66840 hypothetical protein                                         37  0.003
At5g38150 putative protein                                             28  1.4
At1g68790 putative nuclear matrix constituent protein 1 (NMCP1)        26  5.4
At2g14680 unknown protein                                              25  7.1
At3g28770 hypothetical protein                                         25  9.2

>At1g66840 hypothetical protein
          Length = 607

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 23/63 (36%), Positives = 36/63 (56%), Gaps = 9/63 (14%)

Query: 1   MKNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGVMVVRRNENYEYAQVMRELEYLKKEL 60
           +K L+  IEES+ + K++  DIE +  +          R + N  Y ++MRELE +K+EL
Sbjct: 71  VKELTLRIEESNRRLKSRRIDIEAVMNES---------RIDGNGGYVRIMRELEDMKQEL 121

Query: 61  FKL 63
            KL
Sbjct: 122 SKL 124


>At5g38150 putative protein
          Length = 574

 Score = 27.7 bits (60), Expect = 1.4
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 15/63 (23%)

Query: 1   MKNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGVMVVRRNENYEYAQVMRELEYLKKEL 60
           ++ L+ +I+ S+  A  + KD+E L+ + K               YA+VMR LE +K+E+
Sbjct: 63  VEELALLIKRSNRSAGFQEKDMEVLKMEEK---------------YAEVMRVLEVVKEEV 107

Query: 61  FKL 63
            ++
Sbjct: 108 SRV 110


>At1g68790 putative nuclear matrix constituent protein 1 (NMCP1)
          Length = 1085

 Score = 25.8 bits (55), Expect = 5.4
 Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 6   SMIEESSYKAKAKMKDIETLEKKGKGQHGVMVVRRNENYEYAQVMRE-LEYLKKEL 60
           S++   S + + K+K++ET EK  + +H  +V  R  +       RE L+  +K+L
Sbjct: 195 SVMNRKSSELERKLKEVETREKVHQREHLSLVTEREAHEAVFYKQREDLQEWEKKL 250


>At2g14680 unknown protein
          Length = 629

 Score = 25.4 bits (54), Expect = 7.1
 Identities = 17/59 (28%), Positives = 29/59 (48%)

Query: 2  KNLSSMIEESSYKAKAKMKDIETLEKKGKGQHGVMVVRRNENYEYAQVMRELEYLKKEL 60
          +NL + I++  ++     KDIE L  +  G   + V  R      A + +E+E LK +L
Sbjct: 9  ENLKARIKQLEHERNELQKDIEQLCMQQGGPSILGVAARMHFQRTASLEQEIESLKLKL 67


>At3g28770 hypothetical protein
          Length = 2081

 Score = 25.0 bits (53), Expect = 9.2
 Identities = 16/51 (31%), Positives = 25/51 (48%)

Query: 9    EESSYKAKAKMKDIETLEKKGKGQHGVMVVRRNENYEYAQVMRELEYLKKE 59
            +E S   KAK K+ ET EKK    H        + +E  + M++ E  K++
Sbjct: 1052 KEESRDLKAKKKEEETKEKKESENHKSKKKEDKKEHEDNKSMKKEEDKKEK 1102


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,797,077
Number of Sequences: 26719
Number of extensions: 44894
Number of successful extensions: 113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 5
length of query: 122
length of database: 11,318,596
effective HSP length: 87
effective length of query: 35
effective length of database: 8,994,043
effective search space: 314791505
effective search space used: 314791505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)