BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147472.6 + phase: 0 /pseudo
         (180 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g02410 unknown protein                                             282  6e-77
At3g06010 putative transcriptional regulator                           30  0.54
At4g21450 unknown protein                                              28  3.5
At5g41950 unknown protein                                              27  4.5
At3g61960 serine/threonine-protein kinase-like protein                 27  5.9
At3g30450 putative protein on FARE2.5  (cds2)                          27  5.9

>At1g02410 unknown protein
          Length = 287

 Score =  282 bits (722), Expect = 6e-77
 Identities = 137/170 (80%), Positives = 149/170 (87%), Gaps = 1/170 (0%)

Query: 6   LTGLAFGMGVLTIFASPPLYRTFCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQ 65
           LT + FGM  LT +A+ PLYRTFCQAT Y GTV R+E VEEKIARH  + TVT REIVVQ
Sbjct: 97  LTAVVFGMVGLT-YAAVPLYRTFCQATGYGGTVQRKETVEEKIARHSESGTVTEREIVVQ 155

Query: 66  FNADISDGMPWKFLPTQREVRVKPGESALAFYTVENQSSTPITGVSTYNVTPMKLGVYFN 125
           FNAD++DGM WKF PTQREVRVKPGESALAFYT EN+SS PITGVSTYNVTPMK GVYFN
Sbjct: 156 FNADVADGMQWKFTPTQREVRVKPGESALAFYTAENKSSAPITGVSTYNVTPMKAGVYFN 215

Query: 126 KIQCFCFEEQRLLPGEKIDMPVFFYIDPEIEDDPKMNGINNIILSYTFFK 175
           KIQCFCFEEQRLLPGE+IDMPVFFYIDPE E DP+M+GINN+ILSYTFFK
Sbjct: 216 KIQCFCFEEQRLLPGEQIDMPVFFYIDPEFETDPRMDGINNLILSYTFFK 265


>At3g06010 putative transcriptional regulator
          Length = 1132

 Score = 30.4 bits (67), Expect = 0.54
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 2/63 (3%)

Query: 34  YDGTVTRRERVEEKIARHDS-NQTVTSREIVVQFNADISDGMPWKFLPTQREVRVKPGES 92
           YDG +  R+ + EKIA     N  +T  +++++  A +   + W ++      R+K  ES
Sbjct: 513 YDGRLEERKAIREKIAGEGKFNVLITHYDLIMRDKAFLKK-IEWYYMIVDEGHRLKNHES 571

Query: 93  ALA 95
           ALA
Sbjct: 572 ALA 574


>At4g21450 unknown protein
          Length = 295

 Score = 27.7 bits (60), Expect = 3.5
 Identities = 26/88 (29%), Positives = 39/88 (43%), Gaps = 5/88 (5%)

Query: 78  FLPTQREVRVKPGESALAFYTVENQ--SSTPITGVSTYNVTPMKLGVYFNKIQCFCFEEQ 135
           FLPT+R +++ P E     Y    Q  S+  I   S  +V   K      K  CF     
Sbjct: 101 FLPTKRRLKLDPSEKLYFPYEPGKQVRSAIKIKNTSKSHVA-FKFQTTAPK-SCFMRPPG 158

Query: 136 RLL-PGEKIDMPVFFYIDPEIEDDPKMN 162
            +L PGE I   VF +++P   ++  M+
Sbjct: 159 AILAPGETIIATVFKFVEPPENNEKPMD 186


>At5g41950 unknown protein
          Length = 565

 Score = 27.3 bits (59), Expect = 4.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 52  DSNQTVTSREIVVQFNADISDGMPWKFL-PTQREVRVKPGES 92
           D N+T T RE++ +  ++  DG P     P  RE   +P E+
Sbjct: 140 DGNKTFTMRELLSELKSEEGDGTPHSSASPFSRESASQPAEN 181


>At3g61960 serine/threonine-protein kinase-like protein
          Length = 626

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 21/93 (22%), Positives = 40/93 (42%), Gaps = 8/93 (8%)

Query: 28  FCQATSYDGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWKFLPTQREVR- 86
           +C      G + R  +V E +A+H   Q     +++ + +    D  P   L + +EV  
Sbjct: 88  YCSGGDLAGYINRHGKVPEAVAKHFMRQLALGLQVLQEKHFIHRDLKPQNLLLSSKEVTP 147

Query: 87  -VKPGESALAFYTVENQSSTPITGVSTYNVTPM 118
            +K G+   A      +S TP +   T+  +P+
Sbjct: 148 LLKIGDFGFA------RSLTPESMAETFCGSPL 174


>At3g30450 putative protein on FARE2.5  (cds2)
          Length = 800

 Score = 26.9 bits (58), Expect = 5.9
 Identities = 16/58 (27%), Positives = 27/58 (45%), Gaps = 4/58 (6%)

Query: 35  DGTVTRRERVEEKIARHDSNQTVTSREIVVQFNADISDGMPWKFLPTQREVRVKPGES 92
           D  + R E  EEK+ +HD       +E  +    ++SD       PT++E + K  E+
Sbjct: 506 DEEMEREEGKEEKVEKHDEYNDAADQEAYI----NLSDDEDNDTAPTEKESQQKKEET 559


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.322    0.138    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,984,480
Number of Sequences: 26719
Number of extensions: 153956
Number of successful extensions: 334
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 6
length of query: 180
length of database: 11,318,596
effective HSP length: 93
effective length of query: 87
effective length of database: 8,833,729
effective search space: 768534423
effective search space used: 768534423
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)