BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146854.1 + phase: 0 /pseudo
         (1390 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g35830 hypothetical protein                                         35  0.23
At4g26350 putative protein                                             32  2.0
At4g36780 unknown protein                                              31  4.4
At2g31240 putative kinesin light chain protein (At2g31240)             31  5.7
At2g15920 putative retroelement pol polyprotein                        30  7.4

>At1g35830 hypothetical protein
          Length = 302

 Score = 35.4 bits (80), Expect = 0.23
 Identities = 32/120 (26%), Positives = 50/120 (41%), Gaps = 13/120 (10%)

Query: 763 HFKLIEQNYNLEPESVFS*-VTSLDSKVQFF------LTYIPEKSLFQEMLFSMN*YYLT 815
           +F+ + Q +   P S FS   +S   +   F      LTY P + + Q+ L       L 
Sbjct: 120 NFRAMVQEFTGVPASPFSHPFSSTTRRFDIFRSPSDPLTYNPFRPIPQKPLNPSTSSLLN 179

Query: 816 IHHHPLLPLKIGNIFLPLPLIFLILRILIFHNHHLLSHHLHSPLLHNLHHYLLMSLYLLE 875
           +HHH    +   ++ LP        + L+ H HH      H P L +LH    M+L  L+
Sbjct: 180 LHHHTTTSMTFPDLPLPQTHQVSTFQSLLSHQHH------HQPTLSSLHDLDSMNLGALQ 233


>At4g26350 putative protein
          Length = 431

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 23/72 (31%), Positives = 36/72 (49%), Gaps = 5/72 (6%)

Query: 883 HLHIYMTTFAMHLFLLLITVSVNIPFPILFHMLVYLTLILFL---LCLLLLILNQNPMMR 939
           H ++   T+A  L++ L    V  P+ ++FHMLV LT+         LL  +L  +P +R
Sbjct: 269 HKYLKEITYAKGLYVCLSVSEVMNPYDMIFHMLVDLTICTCTQGWWDLLTHMLQGSPKLR 328

Query: 940 QSNMTAGNKQCR 951
              +T  N  CR
Sbjct: 329 FLTLT--NDHCR 338


>At4g36780 unknown protein
          Length = 169

 Score = 31.2 bits (69), Expect = 4.4
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 7/84 (8%)

Query: 846 HNHHLLSHHLH-------SPLLHNLHHYLLMSLYLLELPSEIKLHLHIYMTTFAMHLFLL 898
           H H +    L        S  +HN   + ++ L   E+ S     +H+ MT   +H F  
Sbjct: 86  HQHQIFQELLQTSAQIHQSNQVHNHQLFQVLHLRTTEVQSHHPSRVHLAMTETLLHTFFF 145

Query: 899 LITVSVNIPFPILFHMLVYLTLIL 922
               +  + F + FH+L Y T+ L
Sbjct: 146 RSYTTSLLRFLLTFHLLEYPTVRL 169


>At2g31240 putative kinesin light chain protein (At2g31240)
          Length = 617

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 21/62 (33%), Positives = 31/62 (49%), Gaps = 4/62 (6%)

Query: 2  RL*FHKLTPIPFTMSIQVKDQILLRSLLFSPAPIISLGVVR*NVRLVRRTNLPSLMDPFR 61
          RL FHK+ PIP ++ +         S L SPA  IS    R N  + R+      ++P+R
Sbjct: 11 RLHFHKIRPIPLSIHLNAASSSSSSSSLISPAREISTSCRRTNDLIKRQ----FWVNPYR 66

Query: 62 SL 63
          +L
Sbjct: 67 NL 68


>At2g15920 putative retroelement pol polyprotein
          Length = 1100

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 732 FSNINLLIMFYMIHCLIFILSKFLVAFVMLLHFKLIEQNYNLEPESVFS*VTSL 785
           F  I LL+ F M+  L    S+ LVA+V +LH +  + +++L+ + V S  T L
Sbjct: 496 FFQIRLLMRFSMVLLLSMDSSEHLVAYVTVLHHRSKDISFSLDQKLVSSWDTRL 549


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.357    0.162    0.524 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,342,432
Number of Sequences: 26719
Number of extensions: 905357
Number of successful extensions: 4740
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 4734
Number of HSP's gapped (non-prelim): 7
length of query: 1390
length of database: 11,318,596
effective HSP length: 112
effective length of query: 1278
effective length of database: 8,326,068
effective search space: 10640714904
effective search space used: 10640714904
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 66 (30.0 bits)