BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC146752.12 + phase: 2 /pseudo
         (127 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At1g27710 unknown protein                                              26  4.7
At3g01430 unknown protein                                              25  8.1

>At1g27710 unknown protein
          Length = 212

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 9/14 (64%), Positives = 11/14 (78%)

Query: 7   GKGVVVGNGVGGCG 20
           G GV++G G GGCG
Sbjct: 173 GGGVIIGGGGGGCG 186


>At3g01430 unknown protein
          Length = 180

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)

Query: 6   GGKGVVVGNGVGGCGCG 22
           GG G  VGN  GGCG G
Sbjct: 97  GGGGGRVGNSSGGCGGG 113


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.358    0.167    0.583 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,542,837
Number of Sequences: 26719
Number of extensions: 91786
Number of successful extensions: 615
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 610
Number of HSP's gapped (non-prelim): 5
length of query: 127
length of database: 11,318,596
effective HSP length: 87
effective length of query: 40
effective length of database: 8,994,043
effective search space: 359761720
effective search space used: 359761720
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 54 (25.4 bits)