BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146589.2 + phase: 0
(277 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g31230 ethylene reponse factor-like AP2 domain transcription ... 147 5e-36
At1g06160 ethylene response factor, putative 144 4e-35
At3g23240 ethylene response factor 1 141 3e-34
At4g17490 ethylene responsive element binding factor-like protein 109 2e-24
At5g51190 unknown protein 105 2e-23
At4g17500 ethylene responsive element binding factor 1 (frameshi... 100 7e-22
At5g47230 ethylene responsive element binding factor 5 (ATERF5) ... 100 1e-21
At5g47220 ethylene responsive element binding factor 2 (ATERF2) ... 100 1e-21
At3g23230 ethylene responsive element binding protein, putative 97 7e-21
At5g61600 DNA binding protein - like 97 1e-20
At3g23220 ethylene responsive element binding protein, putative 96 2e-20
At5g43410 Nicotiana EREBP-3 like 96 3e-20
At4g18450 EREBP - like protein 96 3e-20
At2g33710 putative AP2 domain transcription factor 94 8e-20
At2g44840 putative ethylene response element binding protein (ER... 93 1e-19
At1g04370 hypothetical protein 93 2e-19
At5g61590 ethylene responsive element binding factor - like 92 2e-19
At5g07580 transcription factor-like protein (emb|CAB87947.1) 92 2e-19
At3g16770 AP2 domain containing protein RAP2.3 91 7e-19
At4g11140 unknown protein with Ap2 domain 90 2e-18
>At2g31230 ethylene reponse factor-like AP2 domain transcription
factor
Length = 243
Score = 147 bits (372), Expect = 5e-36
Identities = 89/190 (46%), Positives = 113/190 (58%), Gaps = 15/190 (7%)
Query: 97 SLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARV 156
S P K + + +++S + +R RGVR+RPWGKFAAEIRDSTR G RV
Sbjct: 52 SFESPEMMIKEEIQNGDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRV 111
Query: 157 WLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKDSLKEMAINSEPLEEGTSPVLAI 216
WLGTF+ EEAALAYDQAAF+ KGSLA LNFP +VV++SLK+M + L +G SPV+A+
Sbjct: 112 WLGTFDKAEEAALAYDQAAFATKGSLATLNFPVEVVRESLKKM--ENVNLHDGGSPVMAL 169
Query: 217 KRKIKREH----IARKSSNEVSKKKIKIDHNGDRTKRETNTKSKH---------VFVFED 263
KRK + R SS+ S + T + + SK + VFED
Sbjct: 170 KRKHSLRNRPRGKKRSSSSSSSSSNSSSCSSSSSTSSTSRSSSKQSVVKQESGTLVVFED 229
Query: 264 LGAEYLEQLL 273
LGAEYLEQLL
Sbjct: 230 LGAEYLEQLL 239
>At1g06160 ethylene response factor, putative
Length = 244
Score = 144 bits (364), Expect = 4e-35
Identities = 100/264 (37%), Positives = 143/264 (53%), Gaps = 44/264 (16%)
Query: 30 LEDVVNYFNGDINFKKDSQSQ--TKESLLLPLSLYAESNSSFPLLSNGSLEVSYNNTTIY 87
+E N+ +G+ + + S S ++ES L S +S LLS+ + +
Sbjct: 1 MEYQTNFLSGEFSPENSSSSSWSSQESFLWEESFLHQSFDQSFLLSSPTDNYCDDFFAFE 60
Query: 88 TQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIR 147
+ +IKE + K +++A+ E ++ RGVR+RPWGKFAAEIR
Sbjct: 61 SSIIKE--------------EGKEATVAA--------EEEEKSYRGVRKRPWGKFAAEIR 98
Query: 148 DSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKDSLKEMAINSEPLE 207
DSTRKG RVWLGTF+T E AALAYDQAAF+ KGSLAVLNFP DVV++SL++M + L
Sbjct: 99 DSTRKGIRVWLGTFDTAEAAALAYDQAAFALKGSLAVLNFPADVVEESLRKM--ENVNLN 156
Query: 208 EGTSPVLAIKRKIKREHIAR------KSSNEVSKKKIKIDHNGDRTKRETNTKSKH---- 257
+G SPV+A+KRK + R SS S ++ + +++S+
Sbjct: 157 DGESPVIALKRKHSMRNRPRGKKKSSSSSTLTSSPSSSSSYSSSSSSSSLSSRSRKQSVV 216
Query: 258 --------VFVFEDLGAEYLEQLL 273
+ V EDLGAEYLE+L+
Sbjct: 217 MTQESNTTLVVLEDLGAEYLEELM 240
>At3g23240 ethylene response factor 1
Length = 218
Score = 141 bits (356), Expect = 3e-34
Identities = 80/160 (50%), Positives = 102/160 (63%), Gaps = 16/160 (10%)
Query: 115 ASSLPLPAIKE-SNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQ 173
+ LP+ ++ +++ RGVRRRPWGKFAAEIRDSTR G RVWLGTF + EEAALAYDQ
Sbjct: 65 SQDLPIKSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQ 124
Query: 174 AAFSAKGSLAVLNFPEDVVKDSLKEMAINSEPLEEGTSPVLAIKRKIKREHIARKSSNEV 233
AAFS +GS A+LNF + V++SL E+ E+G SPV+A+KRK H R+
Sbjct: 125 AAFSMRGSSAILNFSAERVQESLSEIKYT---YEDGCSPVVALKRK----HSMRRRMTNK 177
Query: 234 SKKKIKIDHNGDRTKRETNTKSKHVFVFEDLGAEYLEQLL 273
K DH + K +V VFEDLG +YLE+LL
Sbjct: 178 KTKDSDFDHR--------SVKLDNVVVFEDLGEQYLEELL 209
>At4g17490 ethylene responsive element binding factor-like protein
Length = 282
Score = 109 bits (272), Expect = 2e-24
Identities = 58/127 (45%), Positives = 74/127 (57%)
Query: 67 SSFPLLSNGSLEVSYNNTTIYTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKES 126
S P SN S N + Q ++ ++ P++ + T + LP+P +
Sbjct: 73 SEIPSESNDSFTFQSNPPRVTVQSNRKPPLKIAPPNRTKWIQFATGNPKPELPVPVVAAE 132
Query: 127 NKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLN 186
KR RGVR RPWGKFAAEIRD TR+G RVWLGTF T EAA AYD+ AF +GS A+LN
Sbjct: 133 EKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILN 192
Query: 187 FPEDVVK 193
FP +V K
Sbjct: 193 FPLEVDK 199
>At5g51190 unknown protein
Length = 221
Score = 105 bits (263), Expect = 2e-23
Identities = 57/138 (41%), Positives = 86/138 (62%), Gaps = 11/138 (7%)
Query: 102 SKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTF 161
S ++ K +++A P ++E+++R RGVRRRPWGK+AAEIRD +KG RVWLGTF
Sbjct: 43 STLSQRKPPLATIAVPTTAPVVQENDQRHYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTF 102
Query: 162 NTEEEAALAYDQAAFSAKGSLAVLNFPEDVVKDSLKEMAINSEPLEEGTSPVLAIKRKIK 221
+T EAA YD+AAF +GS A+LNFP + K +++ N + +++K K K
Sbjct: 103 DTAMEAARGYDKAAFKLRGSKAILNFPLEAGKH--EDLGDNKK--------TISLKAKRK 152
Query: 222 REHIARKSSNEVSKKKIK 239
R+ + S +S+K +K
Sbjct: 153 RQ-VTEDESQLISRKAVK 169
>At4g17500 ethylene responsive element binding factor 1 (frameshift
!)
Length = 246
Score = 100 bits (250), Expect = 7e-22
Identities = 73/198 (36%), Positives = 101/198 (50%), Gaps = 24/198 (12%)
Query: 52 KESLLLPLSLYAESNSSFPLLSNGSLEVSYNNTTIYTQVIKETETSLSLPSKKNKNKKKT 111
KE+ + +Y N +F S S + + + V ET S + K+KT
Sbjct: 52 KENDSEDMLVYGILNDAFHGGWEPSSSSSDEDRSSFPSVKIETPESFAAVDSVPVKKEKT 111
Query: 112 SSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAY 171
S +++ A+ + + RGVR+RPWGKFAAEIRD + GARVWLGTF T E+AALAY
Sbjct: 112 SPVSA-----AVTAAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAY 166
Query: 172 DQAAFSAKGSLAVLNFPEDVVKDSLKEMAINS-EPLEEGTSPVLAIKRKIKREHIARKSS 230
D+AAF +GS A+LNFP + +NS EP PV + K KR + +
Sbjct: 167 DRAAFRMRGSRALLNFP----------LRVNSGEP-----DPV---RIKSKRSSFSSSNE 208
Query: 231 NEVSKKKIKIDHNGDRTK 248
N KK+ + G K
Sbjct: 209 NGAPKKRRTVAAGGGMDK 226
>At5g47230 ethylene responsive element binding factor 5 (ATERF5)
(sp|O80341)
Length = 300
Score = 100 bits (248), Expect = 1e-21
Identities = 51/103 (49%), Positives = 69/103 (66%), Gaps = 1/103 (0%)
Query: 91 IKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDST 150
I++ +SLP+K + + + P + E K+ RGVR+RPWGKFAAEIRD
Sbjct: 117 IRKPPLKISLPAKTEWIQFAAENTKPEVTKP-VSEEEKKHYRGVRQRPWGKFAAEIRDPN 175
Query: 151 RKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVK 193
++G+RVWLGTF+T EAA AYD+AAF +GS A+LNFP +V K
Sbjct: 176 KRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFPLEVGK 218
>At5g47220 ethylene responsive element binding factor 2 (ATERF2)
(sp|O80338)
Length = 243
Score = 100 bits (248), Expect = 1e-21
Identities = 59/124 (47%), Positives = 76/124 (60%), Gaps = 12/124 (9%)
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFP--- 188
RGVR+RPWGKFAAEIRD + GARVWLGTF T E+AALAYD AAF +GS A+LNFP
Sbjct: 118 RGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPLRV 177
Query: 189 ----EDVVKDSLKEMAINSEPLEEGTSPVLAIKRKIKREHIARKSSNEVSKKKIKIDHNG 244
D V+ + K + +S TS + K+KR A ++EV + K ++ G
Sbjct: 178 NSGEPDPVRITSKRSSSSSSSSSSSTSS--SENGKLKRRRKAENLTSEVVQVKCEV---G 232
Query: 245 DRTK 248
D T+
Sbjct: 233 DETR 236
>At3g23230 ethylene responsive element binding protein, putative
Length = 122
Score = 97.4 bits (241), Expect = 7e-21
Identities = 44/59 (74%), Positives = 51/59 (85%)
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPED 190
RGVRRRPWGKFAAEIRD +R GAR+WLGTF T EEAA AYD+AAF+ +G LA+LNFP +
Sbjct: 21 RGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILNFPNE 79
>At5g61600 DNA binding protein - like
Length = 241
Score = 96.7 bits (239), Expect = 1e-20
Identities = 45/79 (56%), Positives = 57/79 (71%)
Query: 113 SLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYD 172
S++ ++ KE +R RGVRRRPWGK+AAEIRD +KG R+WLGT++T EA AYD
Sbjct: 70 SVSRTVSTKTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYD 129
Query: 173 QAAFSAKGSLAVLNFPEDV 191
QAAF +G A+LNFP DV
Sbjct: 130 QAAFQLRGRKAILNFPLDV 148
>At3g23220 ethylene responsive element binding protein, putative
Length = 128
Score = 96.3 bits (238), Expect = 2e-20
Identities = 43/59 (72%), Positives = 50/59 (83%)
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPED 190
RGVR+RPWGK+AAEIRDS R GARVWLGTFNT E+AA AYD+AAF +G A+LNFP +
Sbjct: 4 RGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGMRGQRAILNFPHE 62
>At5g43410 Nicotiana EREBP-3 like
Length = 131
Score = 95.5 bits (236), Expect = 3e-20
Identities = 43/59 (72%), Positives = 50/59 (83%)
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPED 190
RGVRRRPWGK+AAEIRDS + G RVWLGTF+T EEAA AYDQAA+S +G A+LNFP +
Sbjct: 16 RGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQAAILNFPHE 74
>At4g18450 EREBP - like protein
Length = 303
Score = 95.5 bits (236), Expect = 3e-20
Identities = 91/287 (31%), Positives = 127/287 (43%), Gaps = 59/287 (20%)
Query: 42 NFKKDSQSQTKESLLLPLSLYAESNSSFPLLSNGSLEV--SYNNTTIYTQVIKETETSLS 99
N+ Q+ T+ + +S E+ + + GS E+ S + +T + + + S
Sbjct: 20 NYIGTPQTDTRSIQVPEVSRTWEALPTLDDIPEGSREMLQSLDMSTEDQEWTEILDAIAS 79
Query: 100 LPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLG 159
P+K N + T+ S L + R RGVR+RPWGKFAAEIRDSTR G RVWLG
Sbjct: 80 FPNKTNHDPL-TNPTIDSCSLSSRVSCKTRKYRGVRKRPWGKFAAEIRDSTRNGVRVWLG 138
Query: 160 TFNTEEEAALAYDQAAFSAKGS-LAVLNFPEDVVKDSLKEMAINSEP-----LEEGTSPV 213
TF T EEAA+AYD+AA +G+ A NF + V +K M ++ P TS
Sbjct: 139 TFQTAEEAAMAYDKAAVRIRGTQKAHTNFQLETV---IKAMEMDCNPNYYRMNNSNTSDP 195
Query: 214 LAIKRKI------------------------------KREHI----------------AR 227
L RKI +EH R
Sbjct: 196 LRSSRKIGLRTGKEAVKAYDEVVDGMVENHCALSYCSTKEHSETRGLRGSEETWFDLRKR 255
Query: 228 KSSNEVSKKKIKIDHNGDRTKRETNTKSKHVFVFEDLGAEYLEQLLS 274
+ SNE S + +++ T ET +F FEDLG++YLE LLS
Sbjct: 256 RRSNEDSMCQ-EVEMQKTVTGEETVCDVFGLFEFEDLGSDYLETLLS 301
>At2g33710 putative AP2 domain transcription factor
Length = 218
Score = 94.0 bits (232), Expect = 8e-20
Identities = 49/77 (63%), Positives = 57/77 (73%), Gaps = 1/77 (1%)
Query: 115 ASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQA 174
+SSL L S +R RGVR+RPWGK+AAEIRD K ARVWLGTF+T EEAALAYD+A
Sbjct: 54 SSSLTLQEKSNSRQRNYRGVRQRPWGKWAAEIRDPN-KAARVWLGTFDTAEEAALAYDKA 112
Query: 175 AFSAKGSLAVLNFPEDV 191
AF +G A LNFPE +
Sbjct: 113 AFEFRGHKAKLNFPEHI 129
>At2g44840 putative ethylene response element binding protein
(EREBP)
Length = 226
Score = 93.2 bits (230), Expect = 1e-19
Identities = 63/180 (35%), Positives = 91/180 (50%), Gaps = 6/180 (3%)
Query: 67 SSFPLLSNGSLEVSYNNTTIYTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPAIKES 126
S PL + S +++ NT + V S+ + + K ++ AS P K
Sbjct: 32 SDLPLSVDDSQDMAIYNT-LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM 90
Query: 127 NKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLN 186
RGVRRRPWGKFAAEIRD + GARVWLGT+ T E+AA+AYD+AAF +GS A LN
Sbjct: 91 Q---YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLN 147
Query: 187 FPEDVVKDSLKEMAINSEPLEEGTSPVLAIKRKIKREHIARKSSNEVSKKKIKIDHNGDR 246
FP + S K + P P ++ + +++ + E S ++D D+
Sbjct: 148 FPHLI--GSCKYEPVRIRPRRRSPEPSVSDQLTSEQKRESHVDDGESSLVVPELDFTVDQ 205
>At1g04370 hypothetical protein
Length = 133
Score = 92.8 bits (229), Expect = 2e-19
Identities = 41/59 (69%), Positives = 50/59 (84%)
Query: 132 RGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPED 190
RGVRRRPWGK+AAEIRDS + G RVWLGTF+T E+AA AYD+AA+S +G A+LNFP +
Sbjct: 21 RGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPHE 79
>At5g61590 ethylene responsive element binding factor - like
Length = 201
Score = 92.4 bits (228), Expect = 2e-19
Identities = 53/123 (43%), Positives = 70/123 (56%), Gaps = 16/123 (13%)
Query: 94 TETSLSLPSKKNKNKKKTSSLASSLPLPAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKG 153
+ T+ S + N+KKT + R RGVRRRPWGKFAAEIRD +KG
Sbjct: 81 SSTTTSPEVETVSNRKKTKRFEET-----------RHYRGVRRRPWGKFAAEIRDPAKKG 129
Query: 154 ARVWLGTFNTEEEAALAYDQAAFSAKGSLAVLNFPEDVVK-----DSLKEMAINSEPLEE 208
+R+WLGTF ++ +AA AYD AAF +G AVLNFP D K +S ++ P +
Sbjct: 130 SRIWLGTFESDIDAARAYDYAAFKLRGRKAVLNFPLDAGKYDAPVNSCRKRRRTDVPQPQ 189
Query: 209 GTS 211
GT+
Sbjct: 190 GTT 192
>At5g07580 transcription factor-like protein (emb|CAB87947.1)
Length = 207
Score = 92.4 bits (228), Expect = 2e-19
Identities = 44/70 (62%), Positives = 53/70 (74%)
Query: 124 KESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSLA 183
+E + R RGVRRRPWGKFAAEIRD +KG+R+WLGTF ++ +AA AYD AAF +G A
Sbjct: 103 EEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKA 162
Query: 184 VLNFPEDVVK 193
VLNFP D K
Sbjct: 163 VLNFPLDAGK 172
>At3g16770 AP2 domain containing protein RAP2.3
Length = 248
Score = 90.9 bits (224), Expect = 7e-19
Identities = 44/69 (63%), Positives = 51/69 (73%), Gaps = 1/69 (1%)
Query: 121 PAIKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKG 180
P + K V RG+R+RPWGK+AAEIRD RKG RVWLGTFNT EEAA+AYD AA +G
Sbjct: 69 PGKRRKRKNVYRGIRKRPWGKWAAEIRDP-RKGVRVWLGTFNTAEEAAMAYDVAAKQIRG 127
Query: 181 SLAVLNFPE 189
A LNFP+
Sbjct: 128 DKAKLNFPD 136
>At4g11140 unknown protein with Ap2 domain
Length = 287
Score = 89.7 bits (221), Expect = 2e-18
Identities = 54/136 (39%), Positives = 74/136 (53%), Gaps = 13/136 (9%)
Query: 64 ESNSSFPLLSNGSLEVS-YNNTTIYTQVIKETETSLSLPSKKNKNKKKTSSLASSLPLPA 122
E F LS V Y + V+ + E P KK + K+ + +P
Sbjct: 30 EEEVDFDALSTKRRRVKKYVKEVVLDSVVSDKEK----PMKKKRKKRVVT-------VPV 78
Query: 123 IKESNKRVLRGVRRRPWGKFAAEIRDSTRKGARVWLGTFNTEEEAALAYDQAAFSAKGSL 182
+ + R RGVR+RPWGK+AAEIRD +R+ RVWLGTF+T EEAA+ YD AA +G
Sbjct: 79 VVTTATRKFRGVRQRPWGKWAAEIRDPSRR-VRVWLGTFDTAEEAAIVYDNAAIQLRGPN 137
Query: 183 AVLNFPEDVVKDSLKE 198
A LNFP V ++++E
Sbjct: 138 AELNFPPPPVTENVEE 153
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.310 0.127 0.346
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,055,175
Number of Sequences: 26719
Number of extensions: 255297
Number of successful extensions: 1190
Number of sequences better than 10.0: 184
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 910
Number of HSP's gapped (non-prelim): 206
length of query: 277
length of database: 11,318,596
effective HSP length: 98
effective length of query: 179
effective length of database: 8,700,134
effective search space: 1557323986
effective search space used: 1557323986
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (27.3 bits)
Medicago: description of AC146589.2