BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146330.6 + phase: 0
(230 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g19350 DNA binding protein ACBF - like 355 1e-98
At5g54900 unknown protein 267 4e-72
At1g11650 putative DNA binding protein 262 1e-70
At3g19130 nuclear acid binding protein, putative 256 5e-69
At4g27000 putative DNA binding protein 255 2e-68
At1g49600 DNA binding protein ACBF, putative 252 1e-67
At1g47500 unknown protein 244 3e-65
At1g47490 unknown protein 242 1e-64
At3g14100 oligouridylate binding protein, putative 109 1e-24
At1g54080 unknown protein 108 3e-24
At1g17370 oligouridylate binding protein, putative 102 2e-22
At2g18510 putative spliceosome associated protein 100 1e-21
At3g52380 RNA-binding protein cp33 precursor 97 5e-21
At5g50250 RNA-binding protein-like 91 5e-19
At4g24770 31 kDa RNA binding protein (rbp31) 90 9e-19
At2g37220 putative RNA-binding protein 88 3e-18
At1g60000 unknown protein 86 1e-17
At4g34110 poly(A)-binding protein 85 3e-17
At2g33410 putative RNA-binding protein 82 2e-16
At2g23350 putative poly(A) binding protein 82 3e-16
>At5g19350 DNA binding protein ACBF - like
Length = 425
Score = 355 bits (910), Expect = 1e-98
Identities = 169/225 (75%), Positives = 188/225 (83%), Gaps = 1/225 (0%)
Query: 4 TYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEF 63
+YH P +LEEVRTLWIGDLQYWVDENYLT CFS TGE++S+K+IRNKITGQPEGYGFIEF
Sbjct: 13 SYHHPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEF 72
Query: 64 VSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYL 123
+SH+AAER LQTYNGTQMPGTE TFRLNWASFG G++ DAGPDHSIFVGDLAPDVTDYL
Sbjct: 73 ISHAAAERTLQTYNGTQMPGTELTFRLNWASFGSGQK-VDAGPDHSIFVGDLAPDVTDYL 131
Query: 124 LQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRIS 183
LQETFR HY SVRGAKVVTDP+TGRSKGYGFVKF++ESERNRAM+EMNG+YCSTRPMRIS
Sbjct: 132 LQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRIS 191
Query: 184 AATPKKTTGYQQNPYAAVVAAAPVPKGITKPYTFFIIRIISIIKC 228
AATPKK G QQ V VP + P ++ S + C
Sbjct: 192 AATPKKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTC 236
Score = 45.1 bits (105), Expect = 3e-05
Identities = 47/187 (25%), Positives = 77/187 (41%), Gaps = 33/187 (17%)
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P S T+ + +L V E L FS GEVI +KI K GYG+++F +
Sbjct: 230 PESDVTCTTISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRP 283
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
+AE +Q G Q+ G +Q R++W+ + G D + D
Sbjct: 284 SAEEAVQRMQG-QVIG-QQAVRISWSK--------NPGQDGWVTQAD----------PNQ 323
Query: 128 FRTHYGSVRGAK-----VVTDPNTGRSKGYGFVKFSDESERNRAMSE--MNGVYCSTRPM 180
+ +YG +G DP+ GYG+ ++ + E + +S GV + + +
Sbjct: 324 WNGYYGYGQGYDAYAYGATQDPSVYAYGGYGYPQYPQQGEGTQDISNSAAGGVAGAEQEL 383
Query: 181 RISAATP 187
ATP
Sbjct: 384 YDPLATP 390
>At5g54900 unknown protein
Length = 387
Score = 267 bits (682), Expect = 4e-72
Identities = 128/192 (66%), Positives = 149/192 (76%), Gaps = 1/192 (0%)
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P S +V++LWIGDLQ W+DENY+ F+ +GE S K+IRNK+TGQ EGYGFIEFVSHS
Sbjct: 53 PGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHS 112
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPDHSIFVGDLAPDVTDYLLQE 126
AERVLQTYNG MP TEQTFRLNWA G GE+R GPDH+IFVGDLAP+VTDY+L +
Sbjct: 113 VAERVLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSD 172
Query: 127 TFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAAT 186
TF+ YGSV+GAKVV D TGRSKGYGFV+F+DE+E+ RAM+EMNG YCSTRPMRI A
Sbjct: 173 TFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAA 232
Query: 187 PKKTTGYQQNPY 198
K Q Y
Sbjct: 233 NKNALPMQPAMY 244
Score = 59.7 bits (143), Expect = 1e-09
Identities = 52/213 (24%), Positives = 93/213 (43%), Gaps = 29/213 (13%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
T+++GDL V + L+ F + G V K++ ++ TG+ +GYGF+ F + R +
Sbjct: 155 TIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMT 214
Query: 75 TYNG----------------TQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPD 118
NG +P ++ N G+ P+ + +IFVG L +
Sbjct: 215 EMNGQYCSTRPMRIGPAANKNALPMQPAMYQ-NTQGANAGDNDPN---NTTIFVGGLDAN 270
Query: 119 VTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTR 178
VTD L+ F +G + K+ K GFV++++++ A+S +NG +
Sbjct: 271 VTDDELKSIFG-QFGELLHVKIPP------GKRCGFVQYANKASAEHALSVLNGTQLGGQ 323
Query: 179 PMRIS-AATPKKTTGYQQNPYAAVVAAAPVPKG 210
+R+S +P K + Q P P+G
Sbjct: 324 SIRLSWGRSPNKQSDQAQWNGGGYYGYPPQPQG 356
>At1g11650 putative DNA binding protein
Length = 405
Score = 262 bits (669), Expect = 1e-70
Identities = 129/198 (65%), Positives = 156/198 (78%), Gaps = 2/198 (1%)
Query: 7 QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
QP + +E+RTLWIGDLQYW+DEN+L CF+HTGE++S K+IRNK TGQ EGYGFIEF SH
Sbjct: 54 QPTTADEIRTLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASH 113
Query: 67 SAAERVLQTYNGTQMPG-TEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQ 125
+AAERVLQT+N +P +Q FRLNWAS G++R D+ PD++IFVGDLA DVTDY+L
Sbjct: 114 AAAERVLQTFNNAPIPSFPDQLFRLNWASLSSGDKRDDS-PDYTIFVGDLAADVTDYILL 172
Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
ETFR Y SV+GAKVV D TGR+KGYGFV+FSDESE+ RAM+EMNGV CSTRPMRI A
Sbjct: 173 ETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPA 232
Query: 186 TPKKTTGYQQNPYAAVVA 203
KK Q++ Y + A
Sbjct: 233 ASKKGVTGQRDSYQSSAA 250
Score = 60.8 bits (146), Expect = 6e-10
Identities = 52/183 (28%), Positives = 88/183 (47%), Gaps = 24/183 (13%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
T+++GDL V + L F + V K++ +++TG+ +GYGF+ F S R +
Sbjct: 156 TIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMT 215
Query: 75 TYNGTQMPGTEQTFRLNWASF--GIGERRP-----------DAGPDHS-IFVGDLAPDVT 120
NG +P + + R+ A+ G+ +R D P+++ +FVG L VT
Sbjct: 216 EMNG--VPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLDASVT 273
Query: 121 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM 180
D L+ F + YG + K+ K GFV+FS++S A+ +NGV +
Sbjct: 274 DDHLKNVF-SQYGEIVHVKIPA------GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTV 326
Query: 181 RIS 183
R+S
Sbjct: 327 RLS 329
Score = 50.4 bits (119), Expect = 8e-07
Identities = 35/124 (28%), Positives = 56/124 (44%), Gaps = 13/124 (10%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G L V +++L + FS GE++ +KI K G F++F S AE L+
Sbjct: 262 TVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPAGKRCG------FVQFSEKSCAEEALRM 315
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDL--APDVTDYLLQETFRTHYG 133
NG Q+ GT T RL+W G +G + G + Y + + +YG
Sbjct: 316 LNGVQLGGT--TVRLSW---GRSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNAYYG 370
Query: 134 SVRG 137
G
Sbjct: 371 GYSG 374
>At3g19130 nuclear acid binding protein, putative
Length = 435
Score = 256 bits (655), Expect = 5e-69
Identities = 120/195 (61%), Positives = 150/195 (76%), Gaps = 1/195 (0%)
Query: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
++V+TLW+GDL +W+DE YL CFSHTGEV S+K+IRNK+T Q EGYGF+EF+S +AAE
Sbjct: 105 DDVKTLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEE 164
Query: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRP-DAGPDHSIFVGDLAPDVTDYLLQETFRT 130
VLQ Y+G+ MP ++Q FR+NWASF GE+R + GPD S+FVGDL+PDVTD LL ETF
Sbjct: 165 VLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSD 224
Query: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
Y SV+ AKVV D NTGRSKGYGFV+F DE+ER+RA++EMNG YCS R MR+ ATPK+
Sbjct: 225 RYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRA 284
Query: 191 TGYQQNPYAAVVAAA 205
QQ + V A
Sbjct: 285 IANQQQHSSQAVILA 299
Score = 61.6 bits (148), Expect = 3e-10
Identities = 52/194 (26%), Positives = 81/194 (40%), Gaps = 33/194 (17%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
++++GDL V + L FS V S K++ + TG+ +GYGF+ F + R L
Sbjct: 203 SVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFGDENERSRALT 262
Query: 75 TYNGT--------------------QMPGTEQTFRL-----NWASFGIGERRPDAGPDHS 109
NG Q + Q L + S G G + + +
Sbjct: 263 EMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNAT 322
Query: 110 IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSE 169
IFVG + PDV D L++ F + +G V K+ KG GFV+F+D A+
Sbjct: 323 IFVGGIDPDVIDEDLRQPF-SQFGEVVSVKIPV------GKGCGFVQFADRKSAEDAIES 375
Query: 170 MNGVYCSTRPMRIS 183
+NG +R+S
Sbjct: 376 LNGTVIGKNTVRLS 389
Score = 45.4 bits (106), Expect = 2e-05
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G + V + L FS GEV+S+KI K G GF++F +AE +++
Sbjct: 322 TIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK------GCGFVQFADRKSAEDAIES 375
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAG 105
NGT + + T RL+W + R D+G
Sbjct: 376 LNGTVI--GKNTVRLSWGRSPNKQWRGDSG 403
>At4g27000 putative DNA binding protein
Length = 415
Score = 255 bits (651), Expect = 2e-68
Identities = 122/191 (63%), Positives = 143/191 (73%)
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P S E+R+LWIGDLQ W+DENYL + F TGE + K+IRNK G EGYGFIEFV+H+
Sbjct: 73 PGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHA 132
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
AER LQTYNG MP +EQ FRLNWA G GERR GP+H++FVGDLAPDVTD++L ET
Sbjct: 133 TAERNLQTYNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTET 192
Query: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATP 187
F+ Y SV+GAKVV D TGRSKGYGFV+F+DESE+ RAM+EMNG YCS+RPMR A
Sbjct: 193 FKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAAN 252
Query: 188 KKTTGYQQNPY 198
KK Q Y
Sbjct: 253 KKPLTMQPASY 263
Score = 54.7 bits (130), Expect = 4e-08
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 25/183 (13%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
T+++GDL V ++ LT F V K++ ++ TG+ +GYGF+ F S R +
Sbjct: 174 TVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 75 TYNG--------------TQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT 120
NG + P T Q GE P + +IFVG + VT
Sbjct: 234 EMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPT---NTTIFVGAVDQSVT 290
Query: 121 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM 180
+ L+ F +G + K+ K GFV++++ + +A+S +NG + +
Sbjct: 291 EDDLKSVFG-QFGELVHVKIPA------GKRCGFVQYANRACAEQALSVLNGTQLGGQSI 343
Query: 181 RIS 183
R+S
Sbjct: 344 RLS 346
Score = 45.8 bits (107), Expect = 2e-05
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 11/98 (11%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G + V E+ L F GE++ +KI K G F+++ + + AE+ L
Sbjct: 279 TIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGKRCG------FVQYANRACAEQALSV 332
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVG 113
NGTQ+ G Q+ RL+W G PD + + G
Sbjct: 333 LNGTQLGG--QSIRLSW---GRSPSNKQTQPDQAQYGG 365
>At1g49600 DNA binding protein ACBF, putative
Length = 445
Score = 252 bits (644), Expect = 1e-67
Identities = 123/195 (63%), Positives = 150/195 (76%), Gaps = 2/195 (1%)
Query: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
++V+TLW+GDL +W+DE YL CFSHT EV S+K+IRNK T Q EGYGF+EF+S SAAE
Sbjct: 116 DDVKTLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEE 175
Query: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRP-DAGPDHSIFVGDLAPDVTDYLLQETFRT 130
LQ+++G MP EQ FRLNWASF GE+R + GPD SIFVGDLAPDV+D +L ETF
Sbjct: 176 ALQSFSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAG 235
Query: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
Y SV+GAKVV D NTGRSKGYGFV+F DE+ER+RAM+EMNG +CS+R MR+ ATPK+
Sbjct: 236 RYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRA 295
Query: 191 TGY-QQNPYAAVVAA 204
Y QQN A+ A
Sbjct: 296 AAYGQQNGSQALTLA 310
Score = 55.8 bits (133), Expect = 2e-08
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 30/190 (15%)
Query: 16 TLWIGDLQYWVDENYLTHCFS-HTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
++++GDL V + L F+ V K++ + TG+ +GYGF+ F + R +
Sbjct: 214 SIFVGDLAPDVSDAVLLETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMT 273
Query: 75 TYNGT---------------------QMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVG 113
NG Q G+ Q L G G + +IFVG
Sbjct: 274 EMNGAFCSSRQMRVGIATPKRAAAYGQQNGS-QALTLAGGHGGNGSMSDGESNNSTIFVG 332
Query: 114 DLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGV 173
L DVT+ L + F + +G V K+ KG GFV+F++ A+ +NG
Sbjct: 333 GLDADVTEEDLMQPF-SDFGEVVSVKIPV------GKGCGFVQFANRQSAEEAIGNLNGT 385
Query: 174 YCSTRPMRIS 183
+R+S
Sbjct: 386 VIGKNTVRLS 395
>At1g47500 unknown protein
Length = 434
Score = 244 bits (623), Expect = 3e-65
Identities = 125/217 (57%), Positives = 151/217 (68%), Gaps = 3/217 (1%)
Query: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGE--VISIKIIRNKITGQPEGYGFIEF 63
HQ A E +T+W+GDLQ W+DE YL F+ E ++S+K+IRNK G EGYGF+EF
Sbjct: 94 HQNAFNGENKTIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEF 153
Query: 64 VSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPDHSIFVGDLAPDVTDY 122
SH A++VLQ +NG MP T+Q FRLNWASF GE+R + GPD SIFVGDLAPDV+D
Sbjct: 154 ESHDVADKVLQEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDA 213
Query: 123 LLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
LL ETF Y SV+ AKVV D NTGRSKGYGFV+F DE+ER +AM+EMNGV CS+R MRI
Sbjct: 214 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 273
Query: 183 SAATPKKTTGYQQNPYAAVVAAAPVPKGITKPYTFFI 219
ATP+KT GYQQ A +G T T F+
Sbjct: 274 GPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFV 310
Score = 53.5 bits (127), Expect = 9e-08
Identities = 45/184 (24%), Positives = 81/184 (43%), Gaps = 25/184 (13%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
++++GDL V + L FS V + K++ + TG+ +GYGF+ F + + +
Sbjct: 200 SIFVGDLAPDVSDALLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 259
Query: 75 TYNGTQMPGTEQTFRLNWAS---------------FGIGERRPDAGPDHSIFVGDLAPDV 119
NG + + + R+ A+ G R + +IFVG L V
Sbjct: 260 EMNGVKC--SSRAMRIGPATPRKTNGYQQQGGYMPSGAFTRSEGDTINTTIFVGGLDSSV 317
Query: 120 TDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRP 179
TD L++ F + +G + K+ KG GFV+F + A+ ++NG +
Sbjct: 318 TDEDLKQPF-SEFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 370
Query: 180 MRIS 183
+R+S
Sbjct: 371 VRLS 374
Score = 48.5 bits (114), Expect = 3e-06
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G L V + L FS GE++S+KI K G GF++FV+ AE L+
Sbjct: 307 TIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 360
Query: 76 YNGTQMPGTEQTFRLNW 92
NGT + +QT RL+W
Sbjct: 361 LNGTVI--GKQTVRLSW 375
>At1g47490 unknown protein
Length = 432
Score = 242 bits (617), Expect = 1e-64
Identities = 122/217 (56%), Positives = 151/217 (69%), Gaps = 3/217 (1%)
Query: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGE--VISIKIIRNKITGQPEGYGFIEF 63
HQ A E +T+W+GDL +W+DE YL F+ E ++S+K+IRNK G EGYGF+EF
Sbjct: 92 HQNAFNGENKTIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEF 151
Query: 64 VSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERR-PDAGPDHSIFVGDLAPDVTDY 122
SH A++VL+ +NGT MP T+Q FRLNWASF GE+R + GPD SIFVGDL+PDV+D
Sbjct: 152 ESHDVADKVLREFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDN 211
Query: 123 LLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
LL ETF Y SV+ AKVV D NTGRSKGYGFV+F DE+ER +AM+EMNGV CS+R MRI
Sbjct: 212 LLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRI 271
Query: 183 SAATPKKTTGYQQNPYAAVVAAAPVPKGITKPYTFFI 219
ATP+KT GYQQ P+G T F+
Sbjct: 272 GPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFV 308
Score = 55.8 bits (133), Expect = 2e-08
Identities = 47/184 (25%), Positives = 85/184 (45%), Gaps = 25/184 (13%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHT-GEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
++++GDL V +N L FS V + K++ + TG+ +GYGF+ F + + +
Sbjct: 198 SIFVGDLSPDVSDNLLHETFSEKYPSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMT 257
Query: 75 TYNGTQMPGTEQTFRLNWAS----FGIGER----------RPDAG-PDHSIFVGDLAPDV 119
NG + + + R+ A+ G ++ RP+ + +IFVG L V
Sbjct: 258 EMNGVKC--SSRAMRIGPATPRKTNGYQQQGGYMPNGTLTRPEGDIMNTTIFVGGLDSSV 315
Query: 120 TDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRP 179
TD L++ F +G + K+ KG GFV+F + A+ ++NG +
Sbjct: 316 TDEDLKQPFN-EFGEIVSVKIPV------GKGCGFVQFVNRPNAEEALEKLNGTVIGKQT 368
Query: 180 MRIS 183
+R+S
Sbjct: 369 VRLS 372
Score = 47.4 bits (111), Expect = 6e-06
Identities = 28/77 (36%), Positives = 43/77 (55%), Gaps = 8/77 (10%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G L V + L F+ GE++S+KI K G GF++FV+ AE L+
Sbjct: 305 TIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIPVGK------GCGFVQFVNRPNAEEALEK 358
Query: 76 YNGTQMPGTEQTFRLNW 92
NGT + +QT RL+W
Sbjct: 359 LNGTVI--GKQTVRLSW 373
>At3g14100 oligouridylate binding protein, putative
Length = 427
Score = 109 bits (273), Expect = 1e-24
Identities = 64/178 (35%), Positives = 102/178 (56%), Gaps = 9/178 (5%)
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R++++G++ V E L F+ TG V S K+IR YGF+ + +A +
Sbjct: 59 RSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRK----DKSSYGFVHYFDRRSAALAIL 114
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
+ NG + G Q ++NWA + G+R D +IFVGDL+P+VTD L ++F + S
Sbjct: 115 SLNGRHLFG--QPIKVNWA-YATGQRE-DTSSHFNIFVGDLSPEVTDATLYQSFSV-FSS 169
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTG 192
A+V+ D TGRS+G+GFV F ++ + A++EMNG + S+R +R + AT T+G
Sbjct: 170 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSG 227
Score = 62.4 bits (150), Expect = 2e-10
Identities = 55/223 (24%), Positives = 90/223 (39%), Gaps = 39/223 (17%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++GDL V + L FS +++ ++ TG+ G+GF+ F + A+ +
Sbjct: 146 IFVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 205
Query: 77 NGTQMPGTEQTFRLNWASFG-----------------------------IGERRPDAGPD 107
NG + + + R NWA+ G + E P+
Sbjct: 206 NGKWL--SSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQ 263
Query: 108 HS-IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
+ ++VG+LAP+VT L F GA V+ + R KG+GFV+++ E A
Sbjct: 264 FTTVYVGNLAPEVTQLDLHRYFHA-----LGAGVIEEVRVQRDKGFGFVRYNTHPEAALA 318
Query: 167 MSEMN-GVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVP 208
+ N Y R ++ S G NP A APVP
Sbjct: 319 IQMGNTQPYLFNRQIKCSWGNKPTPPGTASNPLPP-PAPAPVP 360
Score = 40.8 bits (94), Expect = 6e-04
Identities = 25/83 (30%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
D S++VG++ VT+ LLQE F T G V +K++ + YGFV + D
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIF-TSTGPVESSKLIRKDKS----SYGFVHYFDRRS 108
Query: 163 RNRAMSEMNGVYCSTRPMRISAA 185
A+ +NG + +P++++ A
Sbjct: 109 AALAILSLNGRHLFGQPIKVNWA 131
>At1g54080 unknown protein
Length = 426
Score = 108 bits (269), Expect = 3e-24
Identities = 64/178 (35%), Positives = 99/178 (54%), Gaps = 9/178 (5%)
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R+++ G++ V E L F+ TG + S K+IR YGF+ + A +
Sbjct: 63 RSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRK----DKSSYGFVHYFDRRCASMAIM 118
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
T NG + G Q ++NWA + G+R D +IFVGDL+P+VTD L ++F + S
Sbjct: 119 TLNGRHIFG--QPMKVNWA-YATGQRE-DTSSHFNIFVGDLSPEVTDAALFDSFSA-FNS 173
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTG 192
A+V+ D TGRS+G+GFV F ++ + A++EMNG + S+R +R + AT T G
Sbjct: 174 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFG 231
Score = 62.4 bits (150), Expect = 2e-10
Identities = 51/212 (24%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++GDL V + L FS +++ ++ TG+ G+GF+ F + A+ +
Sbjct: 150 IFVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEM 209
Query: 77 NGTQMPGTEQTFRLNWASFGI-----------------------------GERRPDAGPD 107
NG + + + R NWA+ G E P+ P
Sbjct: 210 NGKWV--SSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQ 267
Query: 108 HS-IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
+ ++VG+L+P+VT L F T GA V+ + R KG+GFV+++ E A
Sbjct: 268 FTTVYVGNLSPEVTQLDLHRLFYT-----LGAGVIEEVRVQRDKGFGFVRYNTHDEAALA 322
Query: 167 MSEMNG-VYCSTRPMRISAATPKKTTGYQQNP 197
+ N + +R +R S +G NP
Sbjct: 323 IQMGNAQPFLFSRQIRCSWGNKPTPSGTASNP 354
>At1g17370 oligouridylate binding protein, putative
Length = 419
Score = 102 bits (254), Expect = 2e-22
Identities = 61/178 (34%), Positives = 99/178 (55%), Gaps = 9/178 (5%)
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R++++G++ V E L F+ TG V S K+IR + YGF+ + +A +
Sbjct: 54 RSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRK----EKSSYGFVHYFDRRSAGLAIL 109
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
+ NG + G Q ++NWA + G+R D +IFVGDL+P+VTD +L F Y +
Sbjct: 110 SLNGRHLFG--QPIKVNWA-YASGQRE-DTSSHFNIFVGDLSPEVTDAMLFTCFSV-YPT 164
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTG 192
A+V+ D TGRS+G+GFV F ++ + A+ E+ G + +R +R + AT T+G
Sbjct: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSG 222
Score = 65.9 bits (159), Expect = 2e-11
Identities = 59/223 (26%), Positives = 95/223 (42%), Gaps = 39/223 (17%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++GDL V + L CFS +++ ++ TG+ G+GF+ F + A+ +
Sbjct: 141 IFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEI 200
Query: 77 NGTQMPGTEQTFRLNWASFGI------------------------------GERRPDAGP 106
G + G+ Q R NWA+ G GE +
Sbjct: 201 TGKWL-GSRQ-IRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQ 258
Query: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
+++VG+LAP+V+ Q H+ S+ GA V+ + R KG+GFV++S E A
Sbjct: 259 YTTVYVGNLAPEVS----QVDLHRHFHSL-GAGVIEEVRVQRDKGFGFVRYSTHVEAALA 313
Query: 167 MSEMN-GVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVP 208
+ N Y S R M+ S + G NP A AP+P
Sbjct: 314 IQMGNTHSYLSGRQMKCSWGSKPTPAGTASNPLPP-PAPAPIP 355
Score = 38.5 bits (88), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (47%), Gaps = 5/83 (6%)
Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
D S++VG++ VT+ LLQE F G V K++ YGFV + D
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVF-AGTGPVESCKLIRK----EKSSYGFVHYFDRRS 103
Query: 163 RNRAMSEMNGVYCSTRPMRISAA 185
A+ +NG + +P++++ A
Sbjct: 104 AGLAILSLNGRHLFGQPIKVNWA 126
>At2g18510 putative spliceosome associated protein
Length = 363
Score = 99.8 bits (247), Expect = 1e-21
Identities = 61/204 (29%), Positives = 106/204 (51%), Gaps = 7/204 (3%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G L + E L F G V+++ + ++++T + YGFIE+ S A+ ++
Sbjct: 26 TVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDADYAIKV 85
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N ++ G + R+N AS ++ D G + +F+G+L PDV + LL +TF
Sbjct: 86 LNMIKLHG--KPIRVNKASQD--KKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIA 139
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQ 195
K++ DP+TG S+G+GF+ + + A+ M G Y S R + +S A K T G +
Sbjct: 140 SNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKKDTKGERH 199
Query: 196 NPYAAVVAAAPVPKG-ITKPYTFF 218
A + AA P ++P+T F
Sbjct: 200 GTPAERLLAATNPTAQKSRPHTLF 223
Score = 44.7 bits (104), Expect = 4e-05
Identities = 30/92 (32%), Positives = 46/92 (49%), Gaps = 1/92 (1%)
Query: 10 SLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVIS-IKIIRNKITGQPEGYGFIEFVSHSA 68
SL+ L+IG+L VDE L FS G + S KI+R+ TG G+GFI + S A
Sbjct: 107 SLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEA 166
Query: 69 AERVLQTYNGTQMPGTEQTFRLNWASFGIGER 100
++ +++ G + + T + GER
Sbjct: 167 SDAAIESMTGQYLSNRQITVSYAYKKDTKGER 198
>At3g52380 RNA-binding protein cp33 precursor
Length = 329
Score = 97.4 bits (241), Expect = 5e-21
Identities = 58/193 (30%), Positives = 102/193 (52%), Gaps = 16/193 (8%)
Query: 9 ASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSA 68
AS EE R L++G+L Y + + L+ F G V+ ++I+ +K+T + G+GF+ S
Sbjct: 111 ASGEEGR-LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEE 169
Query: 69 AERVLQTYNGTQMPGTEQTFRLNWASFGIG------------ERRPDAGPDHSIFVGDLA 116
A+ +Q +N +Q+ G +T ++N+ G R H ++ G+L
Sbjct: 170 AKEAMQMFNSSQIGG--RTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLG 227
Query: 117 PDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCS 176
++T L++ F G V GAKV+ + NTGRS+G+GF+ F A++ MNGV
Sbjct: 228 WNLTSQGLKDAFGDQPG-VLGAKVIYERNTGRSRGFGFISFESAENVQSALATMNGVEVE 286
Query: 177 TRPMRISAATPKK 189
R +R++ A+ ++
Sbjct: 287 GRALRLNLASERE 299
>At5g50250 RNA-binding protein-like
Length = 289
Score = 90.9 bits (224), Expect = 5e-19
Identities = 61/181 (33%), Positives = 96/181 (52%), Gaps = 7/181 (3%)
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P EE + L++G+L Y VD L F G V ++I N+ T Q G+GF+ +
Sbjct: 107 PEPPEEAK-LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVE 165
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRP---DAGPDHSIFVGDLAPDVTDYLL 124
AE+ ++ +N ++ G T ER+P DA I+VG+L DV L
Sbjct: 166 EAEKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAA--FRIYVGNLPWDVDSGRL 223
Query: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISA 184
+ F H G V A+VV+D TGRS+G+GFV+ S+E+E N A++ ++G R ++++
Sbjct: 224 ERLFSEH-GKVVDARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNV 282
Query: 185 A 185
A
Sbjct: 283 A 283
Score = 45.4 bits (106), Expect = 2e-05
Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%)
Query: 102 PDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDES 161
P+ + +FVG+L DV L F G+V ++V+ + +T +S+G+GFV S
Sbjct: 107 PEPPEEAKLFVGNLPYDVDSQALAMLFE-QAGTVEISEVIYNRDTDQSRGFGFVTMSTVE 165
Query: 162 ERNRAMSEMNGVYCSTRPMRISAATPK 188
E +A+ + N + R + ++ A P+
Sbjct: 166 EAEKAVEKFNSFEVNGRRLTVNRAAPR 192
Score = 44.7 bits (104), Expect = 4e-05
Identities = 18/77 (23%), Positives = 40/77 (51%)
Query: 7 QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
QP + +++G+L + VD L FS G+V+ +++ ++ TG+ G+GF++ +
Sbjct: 199 QPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVVDARVVSDRETGRSRGFGFVQMSNE 258
Query: 67 SAAERVLQTYNGTQMPG 83
+ + +G + G
Sbjct: 259 NEVNVAIAALDGQNLEG 275
>At4g24770 31 kDa RNA binding protein (rbp31)
Length = 329
Score = 90.1 bits (222), Expect = 9e-19
Identities = 61/179 (34%), Positives = 90/179 (50%), Gaps = 3/179 (1%)
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P EE + L++G+L Y V+ L F G V ++I N+ T Q G+GF+ S
Sbjct: 144 PEPSEEAK-LFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVD 202
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDA-GPDHSIFVGDLAPDVTDYLLQE 126
AE ++ +N + G T ER P P ++VG+L DV + L++
Sbjct: 203 EAETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQ 262
Query: 127 TFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
F H G V A+VV D TGRS+G+GFV SD E N A+S ++G R +R++ A
Sbjct: 263 LFSEH-GKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVA 320
Score = 47.0 bits (110), Expect = 8e-06
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 102 PDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDES 161
P+ + +FVG+LA DV L F G+V A+V+ + T +S+G+GFV S
Sbjct: 144 PEPSEEAKLFVGNLAYDVNSQALAMLFE-QAGTVEIAEVIYNRETDQSRGFGFVTMSSVD 202
Query: 162 ERNRAMSEMNGVYCSTRPMRISAATPK 188
E A+ + N + R + ++ A P+
Sbjct: 203 EAETAVEKFNRYDLNGRLLTVNKAAPR 229
>At2g37220 putative RNA-binding protein
Length = 289
Score = 88.2 bits (217), Expect = 3e-18
Identities = 56/190 (29%), Positives = 92/190 (47%), Gaps = 23/190 (12%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
L++G+L + VD L F G V +++I +KITG+ G+GF+ S S E Q +
Sbjct: 93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQF 152
Query: 77 NGTQMP---------------------GTEQTFRLNWASFGIGERRPDAGPDHSIFVGDL 115
NG ++ G +F + + +G G AG + ++VG+L
Sbjct: 153 NGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYG-GGGGSGAGSGNRVYVGNL 211
Query: 116 APDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYC 175
+ V D L+ F + G V A+V+ D ++GRSKG+GFV + E A+ ++G
Sbjct: 212 SWGVDDMALESLF-SEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADL 270
Query: 176 STRPMRISAA 185
R +R+S A
Sbjct: 271 DGRQIRVSEA 280
Score = 58.5 bits (140), Expect = 3e-09
Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 107 DHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
D +FVG+L +V L + F + G+V +V+ D TGRS+G+GFV S SE A
Sbjct: 90 DLKLFVGNLPFNVDSAQLAQLFESA-GNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAA 148
Query: 167 MSEMNGVYCSTRPMRISAA--TPKKTTGYQQNP 197
+ NG RP+R++A PK+ G+ + P
Sbjct: 149 AQQFNGYELDGRPLRVNAGPPPPKREDGFSRGP 181
>At1g60000 unknown protein
Length = 258
Score = 86.3 bits (212), Expect = 1e-17
Identities = 55/178 (30%), Positives = 92/178 (50%), Gaps = 12/178 (6%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
L+ G+L Y VD L ++++ N+ TGQ G+ F+ + ++
Sbjct: 87 LYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIIDNL 146
Query: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGP-----DHSIFVGDLAPDVTDYLLQETFRTH 131
+GT+ G + ++N+A + +P+ P +H +FVG+L+ VT L FR
Sbjct: 147 DGTEYLG--RALKVNFAD----KPKPNKEPLYPETEHKLFVGNLSWTVTSESLAGAFR-E 199
Query: 132 YGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKK 189
G V GA+VV D +TGRS+GYGFV +S ++E A+ ++G R +R++ A KK
Sbjct: 200 CGDVVGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGKK 257
Score = 46.6 bits (109), Expect = 1e-05
Identities = 24/87 (27%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Query: 7 QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
+P E L++G+L + V L F G+V+ +++ + TG+ GYGF+ + S
Sbjct: 169 EPLYPETEHKLFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFVCYSSK 228
Query: 67 SAAERVLQTYNGTQMPGTEQTFRLNWA 93
+ E L++ +G ++ G + R+N A
Sbjct: 229 AEMETALESLDGFELEG--RAIRVNLA 253
>At4g34110 poly(A)-binding protein
Length = 629
Score = 85.1 bits (209), Expect = 3e-17
Identities = 47/167 (28%), Positives = 95/167 (56%), Gaps = 7/167 (4%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
+L++GDL + V ++ L F G V+++++ R+ +T + GYG++ F + A R +Q
Sbjct: 37 SLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQE 96
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N + G + R+ ++ RR AG +IF+ +L + L +TF + +G++
Sbjct: 97 LNYIPLYG--KPIRVMYSHRDPSVRRSGAG---NIFIKNLDESIDHKALHDTF-SSFGNI 150
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
KV D ++G+SKGYGFV++++E +A+ ++NG+ + + + +
Sbjct: 151 VSCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 70.5 bits (171), Expect = 7e-13
Identities = 51/192 (26%), Positives = 97/192 (49%), Gaps = 14/192 (7%)
Query: 9 ASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSA 68
A+ + +++ +L ++ L + F G++ S ++++ G+ +G+GF+ F +
Sbjct: 209 ANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENADD 267
Query: 69 AERVLQTYNGTQMPGTE-QTFRLNWASFGIGERR----------PDAGPDHSIFVGDLAP 117
A R +++ NG + E R S E R D +++V +L P
Sbjct: 268 AARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDP 327
Query: 118 DVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCST 177
++D L+E F + +G+V +KV+ DPN G SKG GFV F+ E AMS+++G +
Sbjct: 328 SISDEKLKEIF-SPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIES 385
Query: 178 RPMRISAATPKK 189
+P+ ++ A K+
Sbjct: 386 KPLYVAIAQRKE 397
>At2g33410 putative RNA-binding protein
Length = 404
Score = 82.4 bits (202), Expect = 2e-16
Identities = 59/188 (31%), Positives = 90/188 (47%), Gaps = 23/188 (12%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
L+IG + + DEN L FS+ GEV+ + ++R K TG+P G+GF+ F + +RVLQ
Sbjct: 8 LFIGGISWDTDENLLREYFSNFGEVLQVTVMREKATGRPRGFGFVAFSDPAVIDRVLQDK 67
Query: 77 NGTQ---------MPGTEQTFRLNWASFGIGERRPDAGPD---HSIFVGDLAPDVTDYLL 124
+ M EQ+ +F R D+G + IFVG L P +T
Sbjct: 68 HHIDNRDVDVKRAMSREEQSPAGRSGTFN-ASRNFDSGANVRTKKIFVGGLPPALTSDEF 126
Query: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE----RNRAMSEMNGVYCSTRPM 180
+ F T YG V A ++ D T R +G+GFV F E ++ ++NG + +
Sbjct: 127 RAYFET-YGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVLHKTFHDLNG-----KQV 180
Query: 181 RISAATPK 188
+ A PK
Sbjct: 181 EVKRALPK 188
Score = 28.9 bits (63), Expect = 2.4
Identities = 15/59 (25%), Positives = 29/59 (48%)
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL 73
+ +++G L + + F G V I+ ++ T +P G+GF+ F S + + VL
Sbjct: 110 KKIFVGGLPPALTSDEFRAYFETYGPVSDAVIMIDQTTQRPRGFGFVSFDSEDSVDLVL 168
>At2g23350 putative poly(A) binding protein
Length = 662
Score = 81.6 bits (200), Expect = 3e-16
Identities = 48/157 (30%), Positives = 87/157 (54%), Gaps = 7/157 (4%)
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
+L++GDL + V ++ L F+ +V+S+++ R+ T GYG++ + + AE+ +Q
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N + + G + R+ ++S RR G ++FV +L V + L E F + G++
Sbjct: 107 LNYSYLNG--KMIRITYSSRDSSARRSGVG---NLFVKNLDKSVDNKTLHEAF-SGCGTI 160
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG 172
KV TD + G+S+GYGFV+F E A+ ++NG
Sbjct: 161 VSCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNG 196
Score = 67.0 bits (162), Expect = 8e-12
Identities = 49/184 (26%), Positives = 88/184 (47%), Gaps = 14/184 (7%)
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++ +L ++ L F G + S ++R+ G+ +GF+ F + A R ++
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFENPEDAARAVEAL 285
Query: 77 NGTQMPGTE----QTFRLNWASFGIGERRPDAGPDH-------SIFVGDLAPDVTDYLLQ 125
NG + E + + + + R D +++V +L VTD L+
Sbjct: 286 NGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTVTDEKLR 345
Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
E F +G++ KV+ DP+ G SKG GFV FS SE +R ++EMNG +P+ ++ A
Sbjct: 346 ELF-AEFGTITSCKVMRDPS-GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALA 403
Query: 186 TPKK 189
K+
Sbjct: 404 QRKE 407
Score = 48.5 bits (114), Expect = 3e-06
Identities = 33/95 (34%), Positives = 50/95 (51%), Gaps = 5/95 (5%)
Query: 93 ASFGIGERRPDAGPDH----SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGR 148
A+ GIG G H S++VGDL +VTD L + F T V +V D T
Sbjct: 27 ATPGIGVGGGGDGVTHGALCSLYVGDLDFNVTDSQLYDYF-TEVCQVVSVRVCRDAATNT 85
Query: 149 SKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRIS 183
S GYG+V +S+ + +AM ++N Y + + +RI+
Sbjct: 86 SLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRIT 120
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,390,423
Number of Sequences: 26719
Number of extensions: 221292
Number of successful extensions: 1102
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 572
Number of HSP's gapped (non-prelim): 386
length of query: 230
length of database: 11,318,596
effective HSP length: 96
effective length of query: 134
effective length of database: 8,753,572
effective search space: 1172978648
effective search space used: 1172978648
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Medicago: description of AC146330.6