BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144928.9 - phase: 2 /pseudo
         (1036 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At5g60740 xABC transporter - like protein                             280  4e-75
At1g53390 putative ABC transporter gb|AAD31586.1                      183  5e-46

>At5g60740 xABC transporter - like protein
          Length = 1061

 Score =  280 bits (715), Expect = 4e-75
 Identities = 120/186 (64%), Positives = 144/186 (76%), Gaps = 1/186 (0%)

Query: 3   DWNQAFNFSSDLRFLSSCIKKTKGDISNRLCTAAEVKFYLNSLMEKSSSA-NYLKPNRNC 61
           D+N+AFNFS+   FL++C K TKGD+  R+CTAAEV+ Y N L+  +  A NYLKPN+NC
Sbjct: 79  DYNEAFNFSTKPDFLNACGKTTKGDMMQRICTAAEVRIYFNGLLGGAKRATNYLKPNKNC 138

Query: 62  NLTSWVSGCEPGWACSVPSGQKIDLKDSKEMPARTSNCRACCEGFFCPHGITCMIPCPLG 121
           NL+SW+SGCEPGWAC      K+DLKD K +P RT  C  CC GFFCP GITCMIPCPLG
Sbjct: 139 NLSSWMSGCEPGWACRTAKDVKVDLKDDKNVPVRTQQCAPCCAGFFCPRGITCMIPCPLG 198

Query: 122 SYCPIATLNKTTGVCEPYLYQLPPMQPNHTCGGANVWADFSSSSETFCSAGSYCPTTTTK 181
           +YCP A LN+TTG+C+PY YQLP  QPNHTCGGA++WAD  SSSE FCSAGS+CP+T  K
Sbjct: 199 AYCPEANLNRTTGLCDPYHYQLPSGQPNHTCGGADIWADIGSSSEVFCSAGSFCPSTIDK 258

Query: 182 FPCSSG 187
            PC+ G
Sbjct: 259 LPCTKG 264


>At1g53390 putative ABC transporter gb|AAD31586.1
          Length = 1096

 Score =  183 bits (464), Expect = 5e-46
 Identities = 77/116 (66%), Positives = 93/116 (79%)

Query: 1   DSDWNQAFNFSSDLRFLSSCIKKTKGDISNRLCTAAEVKFYLNSLMEKSSSANYLKPNRN 60
           D+DWN+AFNFSS+L FLSSCIKKT+G I  R+CTAAE+KFY N    K+++  YLKPN N
Sbjct: 80  DADWNRAFNFSSNLNFLSSCIKKTQGSIGKRICTAAEMKFYFNGFFNKTNNPGYLKPNVN 139

Query: 61  CNLTSWVSGCEPGWACSVPSGQKIDLKDSKEMPARTSNCRACCEGFFCPHGITCMI 116
           CNLTSWVSGCEPGW CSV   +++DL++SK+ P R  NC  CCEGFFCP G+TCMI
Sbjct: 140 CNLTSWVSGCEPGWGCSVDPTEQVDLQNSKDFPERRRNCMPCCEGFFCPRGLTCMI 195


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.354    0.153    0.599 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,687,247
Number of Sequences: 26719
Number of extensions: 847159
Number of successful extensions: 3471
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3464
Number of HSP's gapped (non-prelim): 4
length of query: 1036
length of database: 11,318,596
effective HSP length: 109
effective length of query: 927
effective length of database: 8,406,225
effective search space: 7792570575
effective search space used: 7792570575
T: 11
A: 40
X1: 14 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 65 (29.6 bits)