BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC144514.8 - phase: 0 /pseudo
(555 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g47910 reverse transcriptase, putative 137 2e-32
At4g09710 RNA-directed DNA polymerase -like protein 129 3e-30
At2g15540 putative non-LTR retroelement reverse transcriptase 124 1e-28
At1g24640 hypothetical protein 122 5e-28
At2g45230 putative non-LTR retroelement reverse transcriptase 120 2e-27
At2g01840 putative non-LTR retroelement reverse transcriptase 120 2e-27
At2g11240 pseudogene 119 4e-27
At2g17610 putative non-LTR retroelement reverse transcriptase 119 6e-27
At2g41580 putative non-LTR retroelement reverse transcriptase 117 1e-26
At2g17910 putative non-LTR retroelement reverse transcriptase 112 4e-25
At2g16680 putative non-LTR retroelement reverse transcriptase 111 9e-25
At2g05200 putative non-LTR retroelement reverse transcriptase 111 1e-24
At4g10830 putative protein 109 5e-24
At2g31520 putative non-LTR retroelement reverse transcriptase 108 8e-24
At2g25550 putative non-LTR retroelement reverse transcriptase 108 1e-23
At3g45550 putative protein 105 5e-23
At3g32110 non-LTR reverse transcriptase, putative 105 7e-23
At3g31420 hypothetical protein 101 9e-22
At2g31080 putative non-LTR retroelement reverse transcriptase 100 3e-21
At4g15590 reverse transcriptase like protein 89 8e-18
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 137 bits (344), Expect = 2e-32
Identities = 70/156 (44%), Positives = 98/156 (61%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A++ K GF +WI + C+ TV + VL+N G IP RGLRQGDPLSPY+FILC E
Sbjct: 375 ALLRKMGFCEKWISWIMWCITTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEV 434
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
L + IR AE +I+GI + +P++SHLLFADD F KA++ Q ++ IL Y++ S
Sbjct: 435 LIANIRKAERQNLITGIKVATPSPAVSHLLFADDSLFFCKANKEQCGIILEILKQYESVS 494
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQ I+ S I V D++KA I I+G+ ++ G
Sbjct: 495 GQQINFSKSSIQFGHKVEDSIKADIKLILGIHNLGG 530
Score = 79.3 bits (194), Expect = 5e-15
Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 4/185 (2%)
Query: 370 VAQVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFS 429
+ +VG+ A+IS+ ++PWI G+ + V SLID + W++ ++ +F
Sbjct: 707 IKRVGSGASISVWNDPWIPAQFPRPAKYGGSIVDPSLKVKSLIDSRSNFWNIDLLKELFD 766
Query: 430 KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWM--- 486
+ + + N D L W K G Y+VKS + DL + T L P+
Sbjct: 767 PEDVPLISALPIGNPNMEDTLGWHFTKAGNYTVKSGYHTARLDLNEGTTLIGPDLTTLKA 826
Query: 487 GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPF 546
IW+++ PPK++ + +L +P L+ +G+ C CVS EE + H FQC
Sbjct: 827 YIWKVQCPPKLRH-FLWQILSGCVPVSENLRKRGILCDKGCVSCGASEESINHTLFQCHP 885
Query: 547 SVQVW 551
+ Q+W
Sbjct: 886 ARQIW 890
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 129 bits (325), Expect = 3e-30
Identities = 65/141 (46%), Positives = 90/141 (63%)
Query: 41 YTTLKAYH*RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLS 100
Y +K + V+++ GF+++WI + CV TV +S L+N G +P RGLRQGDPLS
Sbjct: 522 YDRIKWNFLQEVLMRLGFHDKWIRWVMQCVCTVSYSFLINGSPQGSVVPSRGLRQGDPLS 581
Query: 101 PYMFILCVEGLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMK 160
PY+FILC E LS L R A+E ++ GI + RG+P ++HLLFADD F K + +
Sbjct: 582 PYLFILCTEVLSGLCRKAQEKGVMVGIRVARGSPQVNHLLFADDTMFFCKTNPTCCGALS 641
Query: 161 NILITYKAASGQAISLPISEI 181
NIL Y+ ASGQ+I+L S I
Sbjct: 642 NILKKYELASGQSINLAKSAI 662
Score = 48.9 bits (115), Expect = 7e-06
Identities = 40/183 (21%), Positives = 75/183 (40%), Gaps = 6/183 (3%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKDI 432
+G +I++ E W+ P + ++ V LI + K W+V I+ +
Sbjct: 861 IGQGDSINVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKHLPQ-- 918
Query: 433 AYDVLNTSLVNQVT-NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRL 491
D + +N + D L+W K+G Y+ K+ + L + + L + IW++
Sbjct: 919 YEDQIRKITINALPLQDSLVWLPVKSGEYTTKTGYALAKLNSFPASQLDF-NWQKNIWKI 977
Query: 492 KVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
PK+K + + LP L + + C E L H+ CP++ +VW
Sbjct: 978 HTSPKVKH-FLWKAMKGALPVGEALSRRNIEAEVTCKRCGQTESSL-HLMLLCPYAKKVW 1035
Query: 552 QFA 554
+ A
Sbjct: 1036 ELA 1038
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 124 bits (311), Expect = 1e-28
Identities = 62/152 (40%), Positives = 94/152 (61%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
RA+M+K GF +W+ + C+ +V + +L+N G P RG+RQGDP+SP++FILC E
Sbjct: 537 RALMLKMGFAQKWVDWIIFCISSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTE 596
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L + ++DAE H I G+ I R +PS SHLLFADD F KAD Q + + +IL Y A
Sbjct: 597 ALVAKLKDAEWHGRIQGLQISRASPSTSHLLFADDSLFFCKADPLQGKEIIDILRLYGEA 656
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
SGQ ++ S + V ++++ +I +G+
Sbjct: 657 SGQQLNPDKSSVMFGHEVDNSIRNTIKVSLGI 688
Score = 47.8 bits (112), Expect = 2e-05
Identities = 48/191 (25%), Positives = 75/191 (39%), Gaps = 20/191 (10%)
Query: 373 VGTCATISILDEPWIKD--GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSK 430
+G+ + ++PWI R L D + V+ LID TK W + +Q +
Sbjct: 806 IGSGMLTRVWEDPWIPSFPPRPAKSILNIRD--THLYVNDLIDPVTKQWKLGRLQELVDP 863
Query: 431 DIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMG--- 487
+L +D W K+G Y+VKS + DL T C + G
Sbjct: 864 SDIPLILGIRPSRTYKSDDFSWSFTKSGNYTVKSGY-WAARDLSRPT---CDLPFQGPSV 919
Query: 488 ------IWRLKVPPKIKKSHVD-DMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHI 540
+W++K K K H + L L T +L + + C +EE + H+
Sbjct: 920 SALQAQVWKIKTTRKFK--HFEWQCLSGCLATNQRLFSRHIGTEKVCPRCGAEEESINHL 977
Query: 541 FFQCPFSVQVW 551
F CP S Q+W
Sbjct: 978 LFLCPPSRQIW 988
>At1g24640 hypothetical protein
Length = 1270
Score = 122 bits (306), Expect = 5e-28
Identities = 61/152 (40%), Positives = 92/152 (60%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
R++++ GF+ +W+ + +CV +V +SVL+N+ G I RGLRQGDPLSP++F+LC E
Sbjct: 553 RSLLLSLGFHLKWVNWIMVCVSSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTE 612
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
GL+ L+ A+ + GI P + HLLFADD KA Q+ V++ IL Y A
Sbjct: 613 GLTHLLNKAQWEGALEGIQFSENGPMVHHLLFADDSLFLCKASREQSLVLQKILKVYGNA 672
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGV 201
+GQ I+L S I + V + LK +I +G+
Sbjct: 673 TGQTINLNKSSITFGEKVDEQLKGTIRTCLGI 704
Score = 41.6 bits (96), Expect = 0.001
Identities = 45/194 (23%), Positives = 77/194 (39%), Gaps = 48/194 (24%)
Query: 372 QVGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVD------SLIDDETKCWDVPFIQ 425
+VG A++ + +PWI +DN A + +N D +L++ T WD +
Sbjct: 888 RVGDGASLFVWIDPWI------DDNGFRAPWRKNLIYDVTLKVKALLNPRTGFWDEEVLH 941
Query: 426 *VFSKDIAYDVLNTSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCV----EDLMDTTHL 479
+F + D+L + V + D +WK K+G +SVKS + L ++L +
Sbjct: 942 DLFLPE---DILRIKAIKPVISQADFFVWKLNKSGDFSVKSAYWLAYQTKSQNLRSEVSM 998
Query: 480 RCPEFWM--GIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ + +W L+ PKI K + + E+ E
Sbjct: 999 QPSTLGLKTQVWNLQTDPKI-KIFLWKVCGEL------------------------GEST 1033
Query: 538 EHIFFQCPFSVQVW 551
H F CP S Q+W
Sbjct: 1034 NHTLFLCPLSRQIW 1047
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 120 bits (302), Expect = 2e-27
Identities = 60/147 (40%), Positives = 92/147 (61%), Gaps = 2/147 (1%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF + WI + CV++V + VL+N G IP RGLRQGDPLSPY+F++C E L +++
Sbjct: 597 GFADHWIRLIMECVKSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQ 656
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKA-DEGQTQVMKNILITYKAASGQAIS 175
AE+ I+G+ + RGAP ISHLLFADD + K DE Q+++ I+ Y ASGQ ++
Sbjct: 657 SAEQKNQITGLKVARGAPPISHLLFADDSMFYCKVNDEALGQIIR-IIEEYSLASGQRVN 715
Query: 176 LPISEIYCNQNVFDALKASITNIIGVQ 202
S IY +++ + + + +G++
Sbjct: 716 YLKSSIYFGKHISEERRCLVKRKLGIE 742
Score = 54.7 bits (130), Expect = 1e-07
Identities = 43/194 (22%), Positives = 82/194 (42%), Gaps = 14/194 (7%)
Query: 371 AQVGTCATISILDEPWI-----KDGRSINDNLPGADFVRN--FCVDSLIDDETKCWDVPF 423
A +G TI++ +PWI K +++ + + + N V L+ + + W+
Sbjct: 924 AVIGNGETINVWTDPWIGAKPAKAAQAVKRSHLVSQYAANSIHVVKDLLLPDGRDWNWNL 983
Query: 424 IQ*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDL------MDTT 477
+ +F + ++L + T D+ W+ ++G YSVKS + + E + +
Sbjct: 984 VSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSVKSGYWVMTEIINQRNNPQEVL 1043
Query: 478 HLRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDL 537
+ IW+L VPPKI + ++ L L + + CV E +
Sbjct: 1044 QPSLDPIFQQIWKLDVPPKI-HHFLWRCVNNCLSVASNLAYRHLAREKSCVRCPSHGETV 1102
Query: 538 EHIFFQCPFSVQVW 551
H+ F+CPF+ W
Sbjct: 1103 NHLLFKCPFARLTW 1116
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 120 bits (302), Expect = 2e-27
Identities = 60/155 (38%), Positives = 90/155 (57%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
VM++ GF RW+ + CV +V + VL+N G P RG+RQGDPLSPY+F+ C E L
Sbjct: 954 VMIQLGFAPRWVKWIMTCVTSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVL 1013
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
S+++R AE ++ I G+ I + +ISHLLFADD F +A + + I Y+ ASG
Sbjct: 1014 SNMLRKAEVNKQIHGMKITKDCLAISHLLFADDSLFFCRASNQNIEQLALIFKKYEEASG 1073
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
Q I+ S I Q + + + ++G+ +V G
Sbjct: 1074 QKINYAKSSIIFGQKIPTMRRQRLHRLLGIDNVRG 1108
Score = 54.3 bits (129), Expect = 2e-07
Identities = 46/196 (23%), Positives = 82/196 (41%), Gaps = 24/196 (12%)
Query: 372 QVGTCATISILDEPWIKD-------GRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFI 424
++G T I ++PW+ G +++++ AD R + + WD
Sbjct: 1269 RLGDGQTTKIWEDPWLPTLPPRPARGPILDEDMKVADLWR---------ENKREWDPVIF 1319
Query: 425 Q*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF------RLCVEDLMDTTH 478
+ V + + + L N D W +N Y+V+S + L E++++
Sbjct: 1320 EGVLNPEDQQLAKSLYLSNYAARDSYKWAYTRNTQYTVRSGYWVATHVNLTEEEIINPLE 1379
Query: 479 LRCPEFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLE 538
P IWRLK+ PKIK + L L T QL+++ + C + +E +
Sbjct: 1380 GDVP-LKQEIWRLKITPKIKH-FIWRCLSGALSTTTQLRNRNIPADPTCQRCCNADETIN 1437
Query: 539 HIFFQCPFSVQVWQFA 554
HI F C ++ VW+ A
Sbjct: 1438 HIIFTCSYAQVVWRSA 1453
>At2g11240 pseudogene
Length = 1044
Score = 119 bits (298), Expect = 4e-27
Identities = 64/157 (40%), Positives = 91/157 (57%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ VM + GF+ WI + C+ TV +S L+N A G P RGLRQGDPLSP++FI+C E
Sbjct: 416 KLVMQEMGFHQTWISWILQCITTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSE 475
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
LS L R A+ + G+ + +G P ++HLLFADD F ++D + IL Y+ A
Sbjct: 476 VLSGLCRKAQLDGSLLGLRVSKGNPRVNHLLFADDTIFFCRSDLKSCKTFLCILKKYEEA 535
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
SGQ I+ S I ++ D +K I+G+Q V G
Sbjct: 536 SGQMINKSKSAITFSRKTPDHIKTEAQQILGIQLVGG 572
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 119 bits (297), Expect = 6e-27
Identities = 57/156 (36%), Positives = 92/156 (58%)
Query: 51 AVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEG 110
A+M + GF+ +W + C+ T +S+L+N V IP RG+RQGDP+SPY+++LC EG
Sbjct: 46 AIMKQMGFSEKWCNWIMTCITTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEG 105
Query: 111 LSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAAS 170
LS+LI+ + + + + G R P+ISHLLFA D +F KA + + N+L Y+ AS
Sbjct: 106 LSALIQASIKAKQLHGFKASRNGPAISHLLFAHDSLVFCKATLEECMTLVNVLKLYEKAS 165
Query: 171 GQAISLPISEIYCNQNVFDALKASITNIIGVQDVLG 206
GQA++ S I + + ++ ++G+ G
Sbjct: 166 GQAVNFQKSAILFGKGLDFRTSEQLSQLLGIYKTEG 201
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/116 (30%), Positives = 48/116 (41%), Gaps = 10/116 (8%)
Query: 447 NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPE--------FWMGIWRLKVPPKIK 498
ND + W +G YSVKS + L + L H P + IW+ PPKIK
Sbjct: 453 NDAITWIYTHDGNYSVKSGYHL-LRKLSQQQHASLPSPNEVSAQTVFTNIWKQNAPPKIK 511
Query: 499 KSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFA 554
LPT LK + + C ED+ H+ FQC S ++W+ A
Sbjct: 512 HFWWRSA-HNALPTAGNLKRRRLITDDTCQRCGEASEDVNHLLFQCRVSKEIWEQA 566
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 117 bits (294), Expect = 1e-26
Identities = 65/158 (41%), Positives = 88/158 (55%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ +++ GFN+ WI M CV +V +SVL+N G P RGLRQGDPLSP++F+LC E
Sbjct: 319 KGILLALGFNSTWINWMMACVSSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTE 378
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
L ++ AE+ ISGI PS++HLLFADD L KA + + + + L Y
Sbjct: 379 ALIHILNQAEKIGKISGIQFNGTGPSVNHLLFADDTLLICKASQLECAEIMHCLSQYGHI 438
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
SGQ I+ S I V + K I N G+Q GT
Sbjct: 439 SGQMINSEKSAITFGAKVNEETKQWIMNRSGIQTEGGT 476
Score = 55.5 bits (132), Expect = 8e-08
Identities = 41/151 (27%), Positives = 66/151 (43%), Gaps = 10/151 (6%)
Query: 408 VDSLIDDETKCWDVPFIQ*VFS-KDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTF 466
V LID ++ W++ ++ +F K+I + ++ D W +G+Y+VKS +
Sbjct: 690 VSQLIDPFSRNWNLNMLRDLFPWKEIQIICQQRPMASR--QDSFCWFGTNHGLYTVKSEY 747
Query: 467 RLCVEDLMDTTHLRCPE------FWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKG 520
LC + E + IW L PKIK + +L + +L+ +G
Sbjct: 748 DLCSRQVHKQMFKEAEEQPSLNPLFGKIWNLNSAPKIKV-FLWKVLKGAVAVEDRLRTRG 806
Query: 521 V*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
V C + E L HI FQCP + QVW
Sbjct: 807 VLIEDGCSMCPEKNETLNHILFQCPLARQVW 837
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 112 bits (281), Expect = 4e-25
Identities = 64/156 (41%), Positives = 88/156 (56%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
+M GFNN+WI + CV +V +SVL+N G IP RG+RQGDPLSP +F+LC E L
Sbjct: 570 MMTALGFNNKWISWIMNCVTSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEAL 629
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
++ AE+ I+GI S++HLLFADD L KA + + + + L Y SG
Sbjct: 630 IHILNKAEQAGKITGIQFQDKKVSVNHLLFADDTLLMCKATKQECEELMQCLSQYGQLSG 689
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
Q I+L S I +NV +K I + G+ GT
Sbjct: 690 QMINLNKSAITFGKNVDIQIKDWIKSRSGISLEGGT 725
Score = 55.8 bits (133), Expect = 6e-08
Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 12/187 (6%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVR-NFCVDSLIDDETKCWDVPFIQ*VFS-K 430
+G + + W+ DG S L F+ + V LID ++ W++ ++ +F K
Sbjct: 904 IGNGQKTFVWTDKWLHDG-SNRRPLNRRRFINVDLKVSQLIDPTSRNWNLNMLRDLFPWK 962
Query: 431 DIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP------EF 484
D+ + L + D W NG+YSVK+ + + + +
Sbjct: 963 DVEIILKQRPLFFK--EDSFCWLHSHNGLYSVKTGYEFLSKQVHHRLYQEAKVKPSVNSL 1020
Query: 485 WMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQC 544
+ IW L PKI+ + L +P +L+ +G+ C+ + + E + HI F+C
Sbjct: 1021 FDKIWNLHTAPKIR-IFLWKALHGAIPVEDRLRTRGIRSDDGCLMCDTENETINHILFEC 1079
Query: 545 PFSVQVW 551
P + QVW
Sbjct: 1080 PLARQVW 1086
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 111 bits (278), Expect = 9e-25
Identities = 60/156 (38%), Positives = 87/156 (55%)
Query: 52 VMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGL 111
++V GFN++WI + CV +V +SVL+N G P RG+RQGDP+SP++F+LC E L
Sbjct: 544 ILVALGFNDKWISWIMGCVTSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEAL 603
Query: 112 SSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASG 171
+++ AE + +SGI PS++HLLF DD L +A + + M L Y SG
Sbjct: 604 IHILQQAENSKKVSGIQFNGSGPSVNHLLFVDDTQLVCRATKSDCEQMMLCLSQYGHISG 663
Query: 172 QAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
Q I++ S I V + K I N G+ GT
Sbjct: 664 QLINVEKSSITFGVKVDEDTKRWIKNRSGIHLEGGT 699
Score = 58.5 bits (140), Expect = 9e-09
Identities = 44/186 (23%), Positives = 80/186 (42%), Gaps = 10/186 (5%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VF-SKD 431
+G ++ + W+ DG S + + V LID T+ W++ + +F KD
Sbjct: 878 IGNGEQTNVWIDKWLFDGHSRRPMNLHSLMNIHMKVSHLIDPLTRNWNLKKLTELFHEKD 937
Query: 432 IAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEF------W 485
+ + L++ + D W NG+Y+VKS + + + +
Sbjct: 938 VQLIMHQRPLIS--SEDSYCWAGTNNGLYTVKSGYERSSRETFKNLFKEADVYPSVNPLF 995
Query: 486 MGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCP 545
+W L+ PKIK + L L +L+ +G+ C+ + + E + H+ FQCP
Sbjct: 996 DKVWSLETVPKIKV-FMWKALKGALAVEDRLRSRGIRTADGCLFCKEEIETINHLLFQCP 1054
Query: 546 FSVQVW 551
F+ QVW
Sbjct: 1055 FARQVW 1060
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 111 bits (277), Expect = 1e-24
Identities = 59/158 (37%), Positives = 88/158 (55%)
Query: 50 RAVMVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVE 109
+ V+ + GF++ WI + CV +V +S L+N G +P RGLRQGDPLSP +FILC E
Sbjct: 485 KKVLQRFGFHSIWIDWVLECVTSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTE 544
Query: 110 GLSSLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAA 169
LS L A+ R + G+ + P ++HLLFADD F K+D + IL Y A
Sbjct: 545 VLSGLCTRAQRLRQLPGVRVSINGPRVNHLLFADDTMFFSKSDPESCNKLSEILSRYGKA 604
Query: 170 SGQAISLPISEIYCNQNVFDALKASITNIIGVQDVLGT 207
SGQ+I+ S + + ++K + I+ ++ GT
Sbjct: 605 SGQSINFHKSSVTFSSKTPRSVKGQVKRILKIRKEGGT 642
Score = 50.8 bits (120), Expect = 2e-06
Identities = 45/178 (25%), Positives = 77/178 (42%), Gaps = 8/178 (4%)
Query: 379 ISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKDIAYDVLN 438
+SI ++PW+ + + P ++ V +LI+ T WD I + Y+ L
Sbjct: 827 VSIWNDPWLSISKPLVPIGPALREHQDLRVSALINQNTLQWDWNKIAVILPN---YENLI 883
Query: 439 TSLVNQVTN--DKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRLKVPPK 496
L + DKL W K+G Y+ +S + + + + + +W+L+ PK
Sbjct: 884 KQLPAPSSRGVDKLAWLPVKSGQYTSRSGYGIASVASIPIPQTQF-NWQSNLWKLQTLPK 942
Query: 497 IKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFA 554
IK + E LP +QL + + P+ E H+FF C F+ QVW+ A
Sbjct: 943 IKHLMWKAAM-EALPVGIQLVRRHI-SPSAACHRCGAPESTTHLFFHCEFAAQVWELA 998
>At4g10830 putative protein
Length = 1294
Score = 109 bits (272), Expect = 5e-24
Identities = 58/146 (39%), Positives = 85/146 (57%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF+ WI + V++V++SVLVN G P RG+RQGDPLSPY+FILC + L+ LI+
Sbjct: 959 GFSETWIKWIMGAVKSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIK 1018
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
+ I GI I G P ++HL FADD F +++ Q +K++ Y+ SGQ I++
Sbjct: 1019 NRVAEGDIRGIRIGNGVPGVTHLQFADDSLFFCQSNVRNCQALKDVFDVYEYYSGQKINM 1078
Query: 177 PISEIYCNQNVFDALKASITNIIGVQ 202
S I V + + NI+G+Q
Sbjct: 1079 SKSMITFGSRVHGTTQNRLKNILGIQ 1104
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 108 bits (270), Expect = 8e-24
Identities = 57/145 (39%), Positives = 85/145 (58%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF N+WI + V++V +SVL+N G P RG+RQGDPLSPY+FILC + LS LI
Sbjct: 753 GFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLIN 812
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
+ G+ I GAP+I+HL FADD F +A+ Q +K++ Y+ SGQ I++
Sbjct: 813 GRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINV 872
Query: 177 PISEIYCNQNVFDALKASITNIIGV 201
S I V+ + ++ + I+ +
Sbjct: 873 QKSMITFGSRVYGSTQSKLKQILEI 897
Score = 49.3 bits (116), Expect = 6e-06
Identities = 30/109 (27%), Positives = 45/109 (40%), Gaps = 6/109 (5%)
Query: 448 DKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP-----EFWMGIWRLKVPPKIKKSHV 502
DK+IW G Y+V+S + L D P + IW L + PK+K +
Sbjct: 1157 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKH-FL 1215
Query: 503 DDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVW 551
L + L T +L +G+ C + E + H F CPF+ W
Sbjct: 1216 WRALSQALATTERLTTRGMRIDPICPRCHRENESINHALFTCPFATMAW 1264
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 108 bits (269), Expect = 1e-23
Identities = 57/145 (39%), Positives = 85/145 (58%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF N+WI + V++V +SVL+N G P RG+RQGDPLSPY+FILC + LS LI
Sbjct: 979 GFCNKWIGWIMAAVKSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLIN 1038
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
+ G+ I GAP+I+HL FADD F +A+ Q +K++ Y+ SGQ I++
Sbjct: 1039 GRASSGDLRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINV 1098
Query: 177 PISEIYCNQNVFDALKASITNIIGV 201
S I V+ + ++ + I+ +
Sbjct: 1099 QKSMITFGSRVYGSTQSRLKQILEI 1123
Score = 49.7 bits (117), Expect = 4e-06
Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 6/112 (5%)
Query: 448 DKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP-----EFWMGIWRLKVPPKIKKSHV 502
DK+IW G Y+V+S + L D P + IW L + PK+K +
Sbjct: 1383 DKIIWNYNTTGEYTVRSGYWLLTHDPSTNIPAINPPHGSIDLKTRIWNLPIMPKLKH-FL 1441
Query: 503 DDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFA 554
L + L T +L +G+ C + E + H F CPF+ W+ +
Sbjct: 1442 WRALSQALATTERLTTRGMRIDPSCPRCHRENESINHALFTCPFATMAWRLS 1493
>At3g45550 putative protein
Length = 851
Score = 105 bits (263), Expect = 5e-23
Identities = 56/145 (38%), Positives = 85/145 (58%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
GF ++WI + V++V +SVL+N G P RG+RQGDPLSPY+FILC + LS LI+
Sbjct: 218 GFCDKWIGWIMAAVKSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIK 277
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
I G+ I GAP+I+HL FADD F +A+ Q +K++ Y+ SGQ I++
Sbjct: 278 VKASSGDIRGVRIGNGAPAITHLQFADDSLFFCQANVRNCQALKDVFDVYEYYSGQKINV 337
Query: 177 PISEIYCNQNVFDALKASITNIIGV 201
S I V+ + + + ++ +
Sbjct: 338 QKSLITFGSRVYGSTQTRLKTLLNI 362
Score = 58.2 bits (139), Expect = 1e-08
Identities = 36/144 (25%), Positives = 61/144 (42%), Gaps = 6/144 (4%)
Query: 416 TKCWDVPFIQ*VFSKDIAYDVLNTSLVNQVTNDKLIWKAEKNGIYSVKSTFRLCVEDLMD 475
++CWD +Q + + L + D+LIW G Y+V+S + L D +
Sbjct: 590 SRCWDNAKLQTFVDQSDHDYIKRIYLSTRSKTDRLIWSYNSTGDYTVRSGYWLSTHDPSN 649
Query: 476 TTHLRCP-----EFWMGIWRLKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSY 530
T + IW L + PK+K + +L + LPT +L +G+ C
Sbjct: 650 TIPTMAKPHGSVDLKTKIWNLPIMPKLKH-FLWRILSKALPTTDRLTTRGMRIDPGCPRC 708
Query: 531 EHQEEDLEHIFFQCPFSVQVWQFA 554
+ E + H F CPF+ W+ +
Sbjct: 709 RRENESINHALFTCPFATMAWRLS 732
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 105 bits (262), Expect = 7e-23
Identities = 57/146 (39%), Positives = 82/146 (56%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
G W+ + CVE +L N + F P RGLRQGDPLSPY+F+LC+E L LI
Sbjct: 1136 GLPGTWVQWIMKCVEGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIE 1195
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
+ + I I + P +SH+ FADD LF +A Q +V++ +L + ASGQ +SL
Sbjct: 1196 SSIAAKKWKPIKISQSGPRLSHICFADDLILFAEASIDQIRVLRGVLEKFCGASGQKVSL 1255
Query: 177 PISEIYCNQNVFDALKASITNIIGVQ 202
S+IY ++NV L I+ G++
Sbjct: 1256 EKSKIYFSKNVLRDLGKRISEESGMK 1281
Score = 40.8 bits (94), Expect = 0.002
Identities = 33/181 (18%), Positives = 76/181 (41%), Gaps = 6/181 (3%)
Query: 373 VGTCATISILDEPWIKDGRSINDNLPGADFVRNFCVDSLIDDETKCWDVPFIQ*VFSKDI 432
+G I + W+ + +D++ + C + + WD+ I + +
Sbjct: 1468 IGDGRQIRFWTDRWLSETPIADDSIVPLSLAQMLCTARDLWRDGTGWDMSQIAPFVTDNK 1527
Query: 433 AYDVLNTSLVNQVT--NDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWR 490
D+L +V+ VT +D+L W +G ++VKS F + D D+ + +W+
Sbjct: 1528 RLDLLAV-IVDSVTGAHDRLAWGMTSDGRFTVKSAFAMLTND--DSPRQDMSSLYGRVWK 1584
Query: 491 LKVPPKIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQV 550
++ P ++ + + ++++ + T + K + + C E + H+ CP +
Sbjct: 1585 VQAPERV-RVFLWLVVNQAIMTNSERKRRHLCDSDVCQVCRGGIESILHVLRDCPAMSGI 1643
Query: 551 W 551
W
Sbjct: 1644 W 1644
>At3g31420 hypothetical protein
Length = 1491
Score = 101 bits (252), Expect = 9e-22
Identities = 51/108 (47%), Positives = 67/108 (61%)
Query: 53 MVKTGFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLS 112
M + GFN +WI + +CV V FSVL+N G P RG+R GDPLSPY+FILC E LS
Sbjct: 778 MRQMGFNTKWIERIMICVTMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLS 837
Query: 113 SLIRDAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMK 160
+I+ AE ++ + GI + P ISHLLFADD F A++ +K
Sbjct: 838 HMIKQAEINKKLKGIRLSTQGPFISHLLFADDSIFFTLANQRSCTAIK 885
Score = 47.8 bits (112), Expect = 2e-05
Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 7/120 (5%)
Query: 441 LVNQVTNDKLI-WKAEKNGIYSVKSTFRLCVEDLMDTTHLRCP----EFWMGIWRLKVPP 495
LV D LI W K+G+Y+VKS + L L TT P + +W+ K P
Sbjct: 1117 LVCSTARDDLIGWHYTKDGMYTVKSAYWLATH-LPGTTGTHPPPGDIKLKQLLWKTKTAP 1175
Query: 496 KIKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQFAG 555
KIK +L + T L+ + + + C EE +H+FF+C ++ W+ AG
Sbjct: 1176 KIKH-FCWKILSGAIATGEMLRYRHINKQSICKRCCRDEETSQHLFFECDYAKATWRGAG 1234
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 100 bits (248), Expect = 3e-21
Identities = 54/145 (37%), Positives = 81/145 (55%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
G + W + V SVL N + F+P RGLRQGDPLSPY+F+LC+E L LI
Sbjct: 460 GLSEGWTSRIMAGVTDPSMSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIE 519
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
+ R I++ G +SH+ FADD LF +A Q ++++ +L + ASGQ +SL
Sbjct: 520 ASVGKREWKPIAVSCGGSKLSHVCFADDLILFAEASVAQIRIIRRVLERFCEASGQKVSL 579
Query: 177 PISEIYCNQNVFDALKASITNIIGV 201
S+I+ + NV ++ I+ G+
Sbjct: 580 EKSKIFFSHNVSREMEQLISEESGI 604
Score = 39.3 bits (90), Expect = 0.006
Identities = 26/116 (22%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 440 SLVNQV---TNDKLIWKAEKNGIYSVKSTFRLCVEDLMDTTHLRCPEFWMGIWRLKVPPK 496
S+V QV D++ WK ++G ++V+S + L D+ D ++ F+ IW+L P +
Sbjct: 857 SVVVQVFLGNGDEISWKGTQDGAFTVRSAYSLLQGDVGDRPNMG--SFFNRIWKLITPER 914
Query: 497 IKKSHVDDMLDEILPTRMQLKDKGV*CPTYCVSYEHQEEDLEHIFFQCPFSVQVWQ 552
++ + + ++ T ++ + + C EE + H+ CP +W+
Sbjct: 915 VRV-FIWLVSQNVIMTNVERVRRHLSENAICSVCNGAEETILHVLRDCPAMEPIWR 969
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 88.6 bits (218), Expect = 8e-18
Identities = 53/145 (36%), Positives = 73/145 (49%), Gaps = 17/145 (11%)
Query: 57 GFNNRWIY*MSMCVETVDFSVLVNNDAVGPFIPGRGLRQGDPLSPYMFILCVEGLSSLIR 116
G + WI + CV + S+L N + F P RGLRQGDP+SPY+F+LC+E L I
Sbjct: 412 GLSEGWIKRIMECVAGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIE 471
Query: 117 DAEEHRIISGISICRGAPSISHLLFADDCFLFFKADEGQTQVMKNILITYKAASGQAISL 176
A ISI +G P +SH+ FADD LF +A+ Q +SL
Sbjct: 472 TAVGRGDWKSISISQGGPKVSHVCFADDLILF-----------------AEASVAQKVSL 514
Query: 177 PISEIYCNQNVFDALKASITNIIGV 201
S+I+ + NV L+ IT G+
Sbjct: 515 EKSKIFFSNNVSRDLEGLITAETGI 539
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.343 0.152 0.517
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,695,410
Number of Sequences: 26719
Number of extensions: 475694
Number of successful extensions: 1785
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1602
Number of HSP's gapped (non-prelim): 132
length of query: 555
length of database: 11,318,596
effective HSP length: 104
effective length of query: 451
effective length of database: 8,539,820
effective search space: 3851458820
effective search space used: 3851458820
T: 11
A: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 38 (21.5 bits)
S2: 63 (28.9 bits)
Medicago: description of AC144514.8