BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141106.11 + phase: 0 /pseudo
(333 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g25740 unknown protein 130 1e-30
At2g36630 unknown protein 112 4e-25
At1g61740 unknown protein 74 1e-13
At1g11540 hypothetical protein; similar to EST gb|AI998648.1 69 5e-12
At4g21260 hypothetical protein 67 2e-11
At4g21250 hypothetical protein 65 4e-11
>At2g25740 unknown protein
Length = 922
Score = 130 bits (327), Expect = 1e-30
Identities = 60/87 (68%), Positives = 71/87 (80%)
Query: 4 GGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTLLII 63
G + +TV YNL+ RHPTLD+P+IDYDLALL QPMLMLGIS+GVAFN+IFPDW++T LLI+
Sbjct: 2 GASVSTVYYNLRLRHPTLDMPIIDYDLALLIQPMLMLGISIGVAFNVIFPDWLVTVLLIV 61
Query: 64 FFTGISVNAFLKGVNTWKKETLTKKVA 90
F G S AFLKG TW KET+ KK A
Sbjct: 62 LFLGTSTKAFLKGSETWNKETIEKKEA 88
>At2g36630 unknown protein
Length = 459
Score = 112 bits (279), Expect = 4e-25
Identities = 47/87 (54%), Positives = 69/87 (79%)
Query: 1 MITGGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTL 60
MI G + ++V YN++ RHPT ++P++DYDLALLFQPML+LGI++GV+ +++FP W++T L
Sbjct: 107 MIMGASASSVWYNVRVRHPTKEVPILDYDLALLFQPMLLLGITVGVSLSVVFPYWLITVL 166
Query: 61 LIIFFTGISVNAFLKGVNTWKKETLTK 87
+II F G S +F KG+ WK+ETL K
Sbjct: 167 IIILFVGTSSRSFFKGIEMWKEETLLK 193
>At1g61740 unknown protein
Length = 458
Score = 73.6 bits (179), Expect = 1e-13
Identities = 36/90 (40%), Positives = 58/90 (64%), Gaps = 1/90 (1%)
Query: 1 MITGGAGATVLYNLKKRHPTLD-LPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTT 59
M+TGG+ A V NL R+P +ID+DLALL +P ++LG+S+GV NL+FP+W++T+
Sbjct: 106 MVTGGSIANVGCNLFVRNPKSGGKTLIDFDLALLLEPCMLLGVSIGVICNLVFPNWLITS 165
Query: 60 LLIIFFTGISVNAFLKGVNTWKKETLTKKV 89
L +F ++ F G+ W+ E+ K+
Sbjct: 166 LFAVFLAWSTLKTFGNGLYYWRLESEMVKI 195
>At1g11540 hypothetical protein; similar to EST gb|AI998648.1
Length = 450
Score = 68.6 bits (166), Expect = 5e-12
Identities = 36/90 (40%), Positives = 55/90 (61%), Gaps = 1/90 (1%)
Query: 1 MITGGAGATVLYNLKKRHP-TLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTT 59
M+TG + A V NL R+P + D +ID+DLAL QP L+LG+S+GV N +FP+W++
Sbjct: 102 MVTGVSFANVGCNLFLRNPKSRDKTLIDFDLALTIQPCLLLGVSIGVICNRMFPNWLVLF 161
Query: 60 LLIIFFTGISVNAFLKGVNTWKKETLTKKV 89
L +F ++ KGV+ W E+ K+
Sbjct: 162 LFAVFLAWSTMKTCKKGVSYWNLESERAKI 191
>At4g21260 hypothetical protein
Length = 393
Score = 66.6 bits (161), Expect = 2e-11
Identities = 49/150 (32%), Positives = 73/150 (48%), Gaps = 29/150 (19%)
Query: 1 MITGGAGATVLYN---LKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWML 57
M+TGG+ A ++ N KK +IDYDLALL +P ++LG+S+GV N +FP+W++
Sbjct: 93 MVTGGSIANLINNHFGCKK--------LIDYDLALLLEPCMLLGVSVGVICNKVFPEWLI 144
Query: 58 TTLLIIFFTGISVNAFLKGVNTWKKETLTKKVAYT*LIL*NEGHFGSSRFLFGSI*SVTK 117
T L ++F S+ G +WK LIL + SR +
Sbjct: 145 TGLFVVFLMWSSMETCENGHTSWKLS----------LILREKEDMRDSR--LAEVKRRRT 192
Query: 118 IIKHKALFL------LSRMFIGRNLDFFSL 141
II K L+L + F+GRNL S+
Sbjct: 193 IIFFKHLYLKIKKTETKQSFLGRNLGIISI 222
>At4g21250 hypothetical protein
Length = 449
Score = 65.5 bits (158), Expect = 4e-11
Identities = 33/84 (39%), Positives = 48/84 (56%), Gaps = 5/84 (5%)
Query: 1 MITGGAGATVLYNLKKRHPTLDLPVIDYDLALLFQPMLMLGISLGVAFNLIFPDWMLTTL 60
M+TGG+ A V+ NL LD YDLALL +P ++LG+S+GV N + P+W++T L
Sbjct: 105 MVTGGSIANVISNLFGGKALLD-----YDLALLLEPCMLLGVSIGVICNRVLPEWLITVL 159
Query: 61 LIIFFTGISVNAFLKGVNTWKKET 84
+F + GV WK E+
Sbjct: 160 FAVFLAWSILKTCRSGVKFWKLES 183
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.369 0.171 0.620
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,745,120
Number of Sequences: 26719
Number of extensions: 195235
Number of successful extensions: 914
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 906
Number of HSP's gapped (non-prelim): 6
length of query: 333
length of database: 11,318,596
effective HSP length: 100
effective length of query: 233
effective length of database: 8,646,696
effective search space: 2014680168
effective search space used: 2014680168
T: 11
A: 40
X1: 14 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC141106.11