BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139882.5 - phase: 0
(379 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g18510 putative spliceosome associated protein 524 e-149
At2g14550 putative spliceosome associated protein 325 3e-89
At4g34110 poly(A)-binding protein 129 3e-30
At1g49760 Putative Poly-A Binding Protein (F14J22.3) 129 3e-30
At2g23350 putative poly(A) binding protein 119 4e-27
At1g71770 polyadenylate-binding protein 5 119 4e-27
At1g54080 unknown protein 118 5e-27
At1g22760 putative polyA-binding protein, PAB3 117 8e-27
At3g14100 oligouridylate binding protein, putative 115 4e-26
At4g16290 FCA delta protein 114 7e-26
At4g16280 FCA gamma protein 114 7e-26
At1g17370 oligouridylate binding protein, putative 110 2e-24
At5g19350 DNA binding protein ACBF - like 103 1e-22
At5g07750 putative protein 101 6e-22
At5g51300 unknown protein 100 1e-21
At3g19130 nuclear acid binding protein, putative 100 2e-21
At4g24770 31 kDa RNA binding protein (rbp31) 99 4e-21
At5g50250 RNA-binding protein-like 97 2e-20
At1g61080 hypothetical protein 93 3e-19
At2g36660 putative poly(A) binding protein 91 1e-18
>At2g18510 putative spliceosome associated protein
Length = 363
Score = 524 bits (1350), Expect = e-149
Identities = 279/383 (72%), Positives = 293/383 (75%), Gaps = 30/383 (7%)
Query: 1 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDR 60
MTTRIAPGVGANLLGQHSAERNQDAT YVG LD Q+SEELLWELFVQAGPVVNVYVPKDR
Sbjct: 1 MTTRIAPGVGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDR 60
Query: 61 VTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD 120
VTN HQ YGF+E+RSEEDADYAIKVLNMIKL+GKPIRVNKASQDKKSLDVGANLFIGNLD
Sbjct: 61 VTNLHQNYGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKASQDKKSLDVGANLFIGNLD 120
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
PDVDEKLLYDTFSAFGVI +NPKIMRDPDTGNSRGFGFISYDSFEASD+AIE+M GQYL
Sbjct: 121 PDVDEKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLS 180
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
NRQITVSYAYKKDTKGERHGTPAER+LAA+NPTAQKSRPHTLFA GPPS +APQ NG
Sbjct: 181 NRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPS--SAPQVNGL- 237
Query: 241 PAPVPPRPFANG-VAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMP 299
PRPFANG + P PI + PPP P Q Q PP W Q Q Q M
Sbjct: 238 -----PRPFANGSMQPVPIPAPRQPPPPPP--QVYQTQPPS---WPSQPQ-----QHSMV 282
Query: 300 PPMQQFRPPHSMQMPPPPPPQGMQ-----GPPRPLPPPSVMAGQQQVWRPPPPPQQQGGH 354
PP QFRPP MPPPPPPQ + G PRP PPP M Q PP QQQGG
Sbjct: 283 PPPMQFRPPQG--MPPPPPPQFLNHQQGFGGPRPPPPPQAMGMHQHGGWPPQHMQQQGGP 340
Query: 355 PM----GYPQNSMPPPPPPNHHG 373
P Y + M PPPP H G
Sbjct: 341 PQQQQPPYQHHHMSMPPPPPHQG 363
Score = 65.9 bits (159), Expect = 4e-11
Identities = 79/303 (26%), Positives = 123/303 (40%), Gaps = 35/303 (11%)
Query: 96 IRVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRG 155
+ N Q + A +++G LD + E+LL++ F G +V N + +D T +
Sbjct: 9 VGANLLGQHSAERNQDATVYVGGLDAQLSEELLWELFVQAGPVV-NVYVPKDRVTNLHQN 67
Query: 156 FGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQ 215
+GFI Y S E +D AI+ +N L + I V+ A +D K G A + +P
Sbjct: 68 YGFIEYRSEEDADYAIKVLNMIKLHGKPIRVNKA-SQDKKSLDVG--ANLFIGNLDPDVD 124
Query: 216 KSRPHTLF------ASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAP 269
+ + F AS P + + N + F A I+ Q
Sbjct: 125 EKLLYDTFSAFGVIASNPKIMRDPDTGNSRGFGFISYDSFEASDA-----AIESMTGQYL 179
Query: 270 AFQPMQMPPPGQQVWHQQQQGQPM--MQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPR 327
+ + + + ++ ++ G P + P Q+ RP M PP + G PR
Sbjct: 180 SNRQITVSYAYKKDTKGERHGTPAERLLAATNPTAQKSRPHTLFAMGPPSSAPQVNGLPR 239
Query: 328 P-----LPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP----QNSMPPPP----PPNHHGM 374
P + P + A +Q PPPPPQ P +P Q+SM PPP PP GM
Sbjct: 240 PFANGSMQPVPIPAPRQP---PPPPPQVYQTQPPSWPSQPQQHSMVPPPMQFRPP--QGM 294
Query: 375 RPP 377
PP
Sbjct: 295 PPP 297
>At2g14550 putative spliceosome associated protein
Length = 314
Score = 325 bits (832), Expect = 3e-89
Identities = 188/310 (60%), Positives = 210/310 (67%), Gaps = 42/310 (13%)
Query: 54 VYVPKDRVTNQ--HQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG 111
+Y P + V + Q +GFV+F +EEDADYAIKV NMIKLYG+PIRV KASQDKKSLDVG
Sbjct: 24 LYKPDELVISVFIQQKFGFVQFHNEEDADYAIKVFNMIKLYGEPIRVKKASQDKKSLDVG 83
Query: 112 ANLFIGNLDP-DVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSA 170
ANLF+GNLDP +VDEK+L+DTFSAFGVI +PKIMRDPDTGN RGFGFISYDSFEASD+A
Sbjct: 84 ANLFLGNLDPVNVDEKMLHDTFSAFGVISDHPKIMRDPDTGNPRGFGFISYDSFEASDAA 143
Query: 171 IEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSL 230
IEAM GQYL NRQITV+YAYKKDTKGERHGTP ER+LAA+ +Q+SRPH LFA+G PS
Sbjct: 144 IEAMTGQYLSNRQITVTYAYKKDTKGERHGTPEERLLAAN---SQRSRPHKLFATG-PST 199
Query: 231 PNAPQANGTIPAPVP-PRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQ 289
NAP+ NG P P+P PRP PP PQ QP P
Sbjct: 200 HNAPKVNGLQPVPIPGPRP--------------PPQPQVYQTQPPSWP------------ 233
Query: 290 GQPMMQQGMP--PPMQQFRPPHSMQMPPPPP--PQGMQ--GPPRPLPPPSVMAGQQQVWR 343
QP Q G+ PPM QFRPP MQ PPPP P Q G PR PP M Q W
Sbjct: 234 SQPQQQYGLAVRPPM-QFRPPQGMQSQPPPPQFPHHQQGFGCPRQPPPYQAMGMHQHGW- 291
Query: 344 PPPPPQQQGG 353
PP QQ GG
Sbjct: 292 PPQHIQQHGG 301
Score = 35.8 bits (81), Expect = 0.040
Identities = 29/82 (35%), Positives = 32/82 (38%), Gaps = 19/82 (23%)
Query: 308 PHSMQMPPP-----PPPQGMQGP----PRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGY 358
PH + P P G+Q PRP P P V Q W P PQQQ G +
Sbjct: 189 PHKLFATGPSTHNAPKVNGLQPVPIPGPRPPPQPQVYQTQPPSW--PSQPQQQYGLAVRP 246
Query: 359 PQNSMPP------PPPPN--HH 372
P PP PPPP HH
Sbjct: 247 PMQFRPPQGMQSQPPPPQFPHH 268
>At4g34110 poly(A)-binding protein
Length = 629
Score = 129 bits (324), Expect = 3e-30
Identities = 75/173 (43%), Positives = 110/173 (63%), Gaps = 3/173 (1%)
Query: 15 GQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFR 74
G +A + + + YVG+LD +++ L++ F Q G VV V V +D VT + GYG+V F
Sbjct: 26 GGATATQFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFT 85
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGA-NLFIGNLDPDVDEKLLYDTFS 133
+ +DA AI+ LN I LYGKPIRV + +D GA N+FI NLD +D K L+DTFS
Sbjct: 86 NPQDAARAIQELNYIPLYGKPIRVMYSHRDPSVRRSGAGNIFIKNLDESIDHKALHDTFS 145
Query: 134 AFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITV 186
+FG IV + K+ D +G S+G+GF+ Y + E++ AIE +NG L ++Q+ V
Sbjct: 146 SFGNIV-SCKVAVD-SSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYV 196
Score = 113 bits (283), Expect = 2e-25
Identities = 95/332 (28%), Positives = 155/332 (46%), Gaps = 34/332 (10%)
Query: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
+A + + YV NL +++ L F + G + + V KD + +G+GFV F + +
Sbjct: 208 TANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDG-EGKSKGFGFVNFENAD 266
Query: 78 DADYAIKVLNMIKLYGKPI---RVNKASQDKKSLDV--------------GANLFIGNLD 120
DA A++ LN K K R K S+ + L V +NL++ NLD
Sbjct: 267 DAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLD 326
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
P + ++ L + FS FG VT+ K+MRDP+ G S+G GF+++ + E + A+ ++G+ +
Sbjct: 327 PSISDEKLKEIFSPFGT-VTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMSQLSGKMIE 384
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVL-AASNPTAQKSRPHTLFASGPPSLPNAPQANGT 239
++ + V+ A +K+ + R +V A P+ P ++ G P +
Sbjct: 385 SKPLYVAIAQRKEDRRVRLQAQFSQVRPVAMQPSVGPRMP--VYPPGGPGIGQQMFYGQA 442
Query: 240 IPAPVPPRPFANGVAPPPIHVIQPPPPQAPAF-----QPMQMPPPGQQ----VWHQQQQG 290
PA +PP+P G + ++P P+F QP Q P G + + H QQQ
Sbjct: 443 PPAMIPPQP-GYGYQQQLVPGMRPGGGPVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQ- 500
Query: 291 QPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGM 322
PMMQQ M P + FR P PP M
Sbjct: 501 NPMMQQQMHPRGRMFRYPQGRGGSGDVPPYDM 532
Score = 86.3 bits (212), Expect = 3e-17
Identities = 100/390 (25%), Positives = 162/390 (40%), Gaps = 41/390 (10%)
Query: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
S R+ ++ NLD I + L + F G +V+ V D + Q +GYGFV++ +EE
Sbjct: 117 SVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEE 175
Query: 78 DADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-----ANLFIGNLDPDVDEKLLYDTF 132
A AI+ LN + L K + V + ++ N+++ NL + L + F
Sbjct: 176 SAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAF 235
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
+G I T+ +M+D + G S+GFGF+++++ + + A+E++NG +++ V A K
Sbjct: 236 GEYGKI-TSAVVMKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQK- 292
Query: 193 DTKGERHGTPAERVLAASNPTAQKSRPHTLFASG-PPSLPNAPQAN-----GTIPAPVPP 246
K ER R A K + L+ PS+ + GT+ +
Sbjct: 293 --KSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVM 350
Query: 247 RPFANGVAPPPIHVIQPPPPQAP------AFQPMQMPP----PGQQVWHQQQQGQPMMQQ 296
R NG + V P +A + + ++ P Q+ ++ + Q Q
Sbjct: 351 RD-PNGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ 409
Query: 297 GMPPPMQQFRPPHSMQMPPPPPPQGM-----QGPPRPLPPPSVMAGQQQVWRPPPPPQQQ 351
P MQ P PP P G Q PP +PP QQQ+ P +
Sbjct: 410 VRPVAMQPSVGPRMPVYPPGGPGIGQQMFYGQAPPAMIPPQPGYGYQQQL----VPGMRP 465
Query: 352 GGHPMGYPQNSMPPPPPPNHH--GMRPPSG 379
GG P+ P MP P G R P G
Sbjct: 466 GGGPV--PSFFMPMVQPQQQRPGGGRRPGG 493
Score = 49.3 bits (116), Expect = 3e-06
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
+ +A++ Q + YV NLDP IS+E L E+F G V + V +D +G GFV F +
Sbjct: 309 KEAADKFQSSNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRD-PNGTSKGSGFVAFAT 367
Query: 76 EEDADYAIKVLNMIKLYGKPIRV 98
E+A A+ L+ + KP+ V
Sbjct: 368 PEEATEAMSQLSGKMIESKPLYV 390
>At1g49760 Putative Poly-A Binding Protein (F14J22.3)
Length = 671
Score = 129 bits (323), Expect = 3e-30
Identities = 76/197 (38%), Positives = 117/197 (58%), Gaps = 9/197 (4%)
Query: 6 APGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQH 65
A G A G A + + YVG+LD +++ L+E F QAG VV+V V +D T +
Sbjct: 29 AAGAAAAAAG---AAQQGTTSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRS 85
Query: 66 QGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLDPDVD 124
GYG+V + + +DA A+ LN + L G+ IRV + +D G N+FI NLD +D
Sbjct: 86 LGYGYVNYATPQDASRALNELNFMALNGRAIRVMYSVRDPSLRKSGVGNIFIKNLDKSID 145
Query: 125 EKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQI 184
K L++TFSAFG I+ + K+ DP +G S+G+GF+ YD+ EA+ AI+ +NG L ++Q+
Sbjct: 146 HKALHETFSAFGPIL-SCKVAVDP-SGQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQV 203
Query: 185 TVS---YAYKKDTKGER 198
V + ++D GE+
Sbjct: 204 YVGPFVHKLQRDPSGEK 220
Score = 111 bits (278), Expect = 6e-25
Identities = 99/340 (29%), Positives = 152/340 (44%), Gaps = 35/340 (10%)
Query: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
S E+ + YV NL +S+E L ++F + G + + +D + +G+GFV F + +
Sbjct: 217 SGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDG-EGKSKGFGFVNFENSD 275
Query: 78 DADYAIKVLNMIKLYGKPIRVNKASQD---------------KKSLDV--GANLFIGNLD 120
DA A+ LN K V KA + K++ D G+NL++ NLD
Sbjct: 276 DAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLD 335
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
V + L + F+ FG I T+ K+MRDP +G SRG GF+++ + E + AI MNG+ +
Sbjct: 336 ESVTDDKLREHFAPFGTI-TSCKVMRDP-SGVSRGSGFVAFSTPEEATRAITEMNGKMIV 393
Query: 181 NRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTI 240
+ + V+ A +K+ + R ++ + P A R GPP G
Sbjct: 394 TKPLYVALAQRKEDRKARLQAQFSQMRPVNMPPAVGPRMQMYPPGGPPMGQQLFYGQGP- 452
Query: 241 PAPVPPRPFA----------NGVAPPP---IHVIQPPPPQAPAFQPMQMPPPGQQ-VWHQ 286
PA +P F G +P P + ++Q Q Q Q P G++ Q
Sbjct: 453 PAMIPQPGFGYQQQLVPGMRPGGSPMPNFFMPMMQQGQQQQQQQQQQQRPGGGRRGALPQ 512
Query: 287 QQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPP 326
QQ PMMQQ M P + +R P P P Q M P
Sbjct: 513 PQQPSPMMQQQMHPRGRMYRYPQRDVNTMPGPTQNMLSVP 552
>At2g23350 putative poly(A) binding protein
Length = 662
Score = 119 bits (297), Expect = 4e-27
Identities = 70/195 (35%), Positives = 112/195 (56%), Gaps = 4/195 (2%)
Query: 2 TTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRV 61
T PG+G G + YVG+LD +++ L++ F + VV+V V +D
Sbjct: 24 TASATPGIGVGG-GGDGVTHGALCSLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAA 82
Query: 62 TNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVG-ANLFIGNLD 120
TN GYG+V + + +DA+ A++ LN L GK IR+ +S+D + G NLF+ NLD
Sbjct: 83 TNTSLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNLD 142
Query: 121 PDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLC 180
VD K L++ FS G IV + K+ D G SRG+GF+ +D+ +++ +AIE +NG+ L
Sbjct: 143 KSVDNKTLHEAFSGCGTIV-SCKVATD-HMGQSRGYGFVQFDTEDSAKNAIEKLNGKVLN 200
Query: 181 NRQITVSYAYKKDTK 195
++QI V +K+ +
Sbjct: 201 DKQIFVGPFLRKEER 215
Score = 110 bits (276), Expect = 1e-24
Identities = 94/332 (28%), Positives = 152/332 (45%), Gaps = 31/332 (9%)
Query: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRS 75
+ +A++ + YV NL +++ L F Q G + + V +D + + +GFV F +
Sbjct: 216 ESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDG-DGKSRCFGFVNFEN 274
Query: 76 EEDADYAIKVLNMIKLYGKPIRVNKASQ-DKKSLDV----------------GANLFIGN 118
EDA A++ LN K K V KA + ++ L++ G NL++ N
Sbjct: 275 PEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKN 334
Query: 119 LDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQY 178
LD V ++ L + F+ FG I T+ K+MRDP +G S+G GF+++ + + + MNG+
Sbjct: 335 LDDTVTDEKLRELFAEFGTI-TSCKVMRDP-SGTSKGSGFVAFSAASEASRVLNEMNGKM 392
Query: 179 LCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANG 238
+ + + V+ A +K+ + + ++ A P P +F G P L G
Sbjct: 393 VGGKPLYVALAQRKEERRAKLQAQFSQMRPAFIPGVGPRMP--IFTGGAPGL-GQQIFYG 449
Query: 239 TIPAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQMPP-PGQQ------VWHQQQQGQ 291
P P+ P G P + ++P P QP Q P PG + + HQ QQ
Sbjct: 450 QGPPPIIPHQPGFGYQPQLVPGMRPAFFGGPMMQPGQQGPRPGGRRSGDGPMRHQHQQPM 509
Query: 292 PMMQQGMPPPMQQFR-PPHSMQMPPPPPPQGM 322
P MQ M P + +R P MP P P GM
Sbjct: 510 PYMQPQMMPRGRGYRYPSGGRNMPDGPMPGGM 541
Score = 84.3 bits (207), Expect = 1e-16
Identities = 61/186 (32%), Positives = 97/186 (51%), Gaps = 14/186 (7%)
Query: 18 SAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEE 77
SA R+ +V NLD + + L E F G +V+ V D + Q +GYGFV+F +E+
Sbjct: 127 SARRSGVGNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHM-GQSRGYGFVQFDTED 185
Query: 78 DADYAIKVLNMIKLYGKPIRVN--------KASQDKKSLDVGANLFIGNLDPDVDEKLLY 129
A AI+ LN L K I V +++ DK N+++ NL + L
Sbjct: 186 SAKNAIEKLNGKVLNDKQIFVGPFLRKEERESAADKMKF---TNVYVKNLSEATTDDELK 242
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
TF +G I ++ +MRD D G SR FGF+++++ E + A+EA+NG+ +++ V A
Sbjct: 243 TTFGQYGSI-SSAVVMRDGD-GKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKA 300
Query: 190 YKKDTK 195
KK +
Sbjct: 301 QKKSER 306
>At1g71770 polyadenylate-binding protein 5
Length = 668
Score = 119 bits (297), Expect = 4e-27
Identities = 65/188 (34%), Positives = 114/188 (60%), Gaps = 4/188 (2%)
Query: 9 VGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGY 68
V A + + + +++ YVG+LDP ++E L +LF Q PV N+ V +D +T++ GY
Sbjct: 29 VAAAAAAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGY 87
Query: 69 GFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKL 127
+V F + EDA A++ LN + +PIR+ +++D + L N+FI NLD +D K
Sbjct: 88 AYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKA 147
Query: 128 LYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVS 187
LY+TFS+FG I+ + K+ D G S+G+GF+ ++ E + +AI+ +NG L ++Q+ V
Sbjct: 148 LYETFSSFGTIL-SCKVAMDV-VGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVG 205
Query: 188 YAYKKDTK 195
+ ++ +
Sbjct: 206 HFVRRQDR 213
Score = 89.4 bits (220), Expect = 3e-18
Identities = 62/177 (35%), Positives = 95/177 (53%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD I + L+E F G +++ V D V + +GYGFV+F EE A AI LN
Sbjct: 135 FIKNLDASIDNKALYETFSSFGTILSCKVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLN 193
Query: 88 MIKLYGKPIRVNK--ASQDKKSLDVGA-----NLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ L K + V QD+ + GA N+++ NL ++ + L TF +G I +
Sbjct: 194 GMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDI-S 252
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ +M+D +GNSR FGF+++ S EA+ A+E MNG L + V A KK + E
Sbjct: 253 SAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREE 308
Score = 84.7 bits (208), Expect = 7e-17
Identities = 88/305 (28%), Positives = 139/305 (44%), Gaps = 43/305 (14%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
YV NL +I+++ L + F + G + + V KD+ N + +GFV F S E A A++ +N
Sbjct: 228 YVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNS-RSFGFVNFVSPEAAAVAVEKMN 286
Query: 88 MIKLYGKPI----RVNKASQDKKSLD--------------VGANLFIGNLDPDVDEKLLY 129
I L G+ + R K S ++ L G+NL++ NLD V+++ L
Sbjct: 287 GISL-GEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLK 345
Query: 130 DTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYA 189
+ FS +G VT+ K+M + G SRGFGF++Y + E + A++ MNG+ + + + V+ A
Sbjct: 346 EMFSEYGN-VTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 403
Query: 190 YKKDTKGERHGTPAERVLAASNPTAQKSRP------HTLFASGPPSLPNAPQANG-TIPA 242
+K+ ER +P P H GP S P+ P G
Sbjct: 404 QRKE---ERQAHLQSLFTQIRSPGTMSPVPSPMSGFHHHPPGGPMSGPHHPMFIGHNGQG 460
Query: 243 PVPPRPFANGVAPPPIHVIQP---PPPQAPAFQPMQMPPPGQQV--------WHQQQQGQ 291
VP +P G + ++P PP F + PG +V QQ Q Q
Sbjct: 461 LVPSQPMGYGYQVQFMPGMRPGAGPPNFMMPFPLQRQTQPGPRVGFRRGANNMQQQFQQQ 520
Query: 292 PMMQQ 296
M+QQ
Sbjct: 521 QMLQQ 525
Score = 42.4 bits (98), Expect = 4e-04
Identities = 26/87 (29%), Positives = 48/87 (54%), Gaps = 1/87 (1%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
E+ Q + Y+ NLD +++E L E+F + G V + V + +G+GFV + + E+A
Sbjct: 323 EKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNS-QGLSRGFGFVAYSNPEEA 381
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKK 106
A+K +N + KP+ V A + ++
Sbjct: 382 LLAMKEMNGKMIGRKPLYVALAQRKEE 408
>At1g54080 unknown protein
Length = 426
Score = 118 bits (296), Expect = 5e-27
Identities = 66/196 (33%), Positives = 114/196 (57%), Gaps = 8/196 (4%)
Query: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
+ Y GN+ Q++E LL E+F GP+ + + + YGFV + A AI
Sbjct: 64 SVYAGNIHTQVTEILLQEIFASTGPIESCKL----IRKDKSSYGFVHYFDRRCASMAIMT 119
Query: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN ++G+P++VN A + D + N+F+G+L P+V + L+D+FSAF ++ +
Sbjct: 120 LNGRHIFGQPMKVNWAYATGQREDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSC-SDAR 178
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE-RHGTP 202
+M D TG SRGFGF+S+ + + + +AI MNG+++ +RQI ++A K T GE +H +
Sbjct: 179 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKGATFGEDKHSSD 238
Query: 203 AERVLAASNPTAQKSR 218
+ V+ +N +++ R
Sbjct: 239 GKSVVELTNGSSEDGR 254
Score = 72.4 bits (176), Expect = 4e-13
Identities = 56/205 (27%), Positives = 96/205 (46%), Gaps = 42/205 (20%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++++ L++ F + V D+ T + +G+GFV FR+++DA AI +N
Sbjct: 151 FVGDLSPEVTDAALFDSFSAFNSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 210
Query: 88 MIKLYGKPIRVN-----------KASQDKKSL-----------------DVGAN------ 113
+ + IR N K S D KS+ D N
Sbjct: 211 GKWVSSRQIRCNWATKGATFGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTT 270
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
+++GNL P+V + L+ F G ++ ++ RD +GFGF+ Y++ + + AI+
Sbjct: 271 VYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRD------KGFGFVRYNTHDEAALAIQ 324
Query: 173 AMNGQ-YLCNRQITVSYAYKKDTKG 196
N Q +L +RQI S+ K G
Sbjct: 325 MGNAQPFLFSRQIRCSWGNKPTPSG 349
Score = 43.1 bits (100), Expect = 2e-04
Identities = 28/81 (34%), Positives = 45/81 (54%), Gaps = 9/81 (11%)
Query: 10 GANLLGQHSAERN-QDATAYVGNLDPQISEELLWELF--VQAGPVVNVYVPKDRVTNQHQ 66
G L + + E N Q T YVGNL P++++ L LF + AG + V V +D+
Sbjct: 253 GRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLFYTLGAGVIEEVRVQRDK------ 306
Query: 67 GYGFVEFRSEEDADYAIKVLN 87
G+GFV + + ++A AI++ N
Sbjct: 307 GFGFVRYNTHDEAALAIQMGN 327
>At1g22760 putative polyA-binding protein, PAB3
Length = 660
Score = 117 bits (294), Expect = 8e-27
Identities = 61/187 (32%), Positives = 114/187 (60%), Gaps = 4/187 (2%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
+ + +++ Y G+LDP+++E L++LF VV+V V +D+ + GY ++ F + DA
Sbjct: 44 QTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQ-NRRSLGYAYINFSNPNDA 102
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQDKKS-LDVGANLFIGNLDPDVDEKLLYDTFSAFGVI 138
A++ LN L+ +PIR+ +++D + L N+FI NLD +D K L++TFS+FG I
Sbjct: 103 YRAMEALNYTPLFDRPIRIMLSNRDPSTRLSGKGNIFIKNLDASIDNKALFETFSSFGTI 162
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
++ K+ D TG S+G+GF+ ++ E++ +AI+ +NG + ++Q+ V + ++ +
Sbjct: 163 LSC-KVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQERARD 220
Query: 199 HGTPAER 205
TP R
Sbjct: 221 ENTPTPR 227
Score = 96.7 bits (239), Expect = 2e-20
Identities = 63/177 (35%), Positives = 96/177 (53%), Gaps = 10/177 (5%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
++ NLD I + L+E F G +++ V D VT + +GYGFV+F EE A AI LN
Sbjct: 139 FIKNLDASIDNKALFETFSSFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 88 MIKLYGKPI-------RVNKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVT 140
+ + K + R +A + N+++ NL ++ E L TF FGVI +
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVI-S 256
Query: 141 NPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+ +MRD +GNSR FGF++++ EA+ SA+E MNG L + + V A KK + E
Sbjct: 257 SAVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREE 312
Score = 92.4 bits (228), Expect = 4e-19
Identities = 92/332 (27%), Positives = 144/332 (42%), Gaps = 36/332 (10%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
YV NL +I E+ L + F + G + + V +D+ N + +GFV F E A A++ +N
Sbjct: 232 YVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNS-RCFGFVNFECTEAAASAVEKMN 290
Query: 88 MIKLYGKPI---RVNKASQDKKSL--------------DVGANLFIGNLDPDVDEKLLYD 130
I L + R K S+ ++ L GANL++ NLD VD++ L +
Sbjct: 291 GISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKLKE 350
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
FS +G VT+ K+M +P G SRGFGF++Y + E + A+ MNG+ + + + ++ A
Sbjct: 351 MFSEYGN-VTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQ 408
Query: 191 KKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFA 250
+K+ + H + A P + P GPP Q NG + VP +P
Sbjct: 409 RKEDR-RAHLQALFSQIRAPGPMSGFHHPPGGPMPGPPQHMYVGQ-NGA--SMVPSQPIG 464
Query: 251 NGVAP-----------PPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMP 299
G P P ++ P + P P G Q Q Q +M +
Sbjct: 465 YGFQPQFMPGMRPGSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLMHRNPS 524
Query: 300 PPMQQFR-PPHSMQMPPPPPPQGMQGPPRPLP 330
P M+ + PQG+ P PLP
Sbjct: 525 PGMRYMNGASNGRNGMDSSVPQGILPPIIPLP 556
Score = 41.6 bits (96), Expect = 7e-04
Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 1/84 (1%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
E++Q A Y+ NLD + +E L E+F + G V + V + +G+GFV + + E+A
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLN-PQGMSRGFGFVAYSNPEEA 385
Query: 80 DYAIKVLNMIKLYGKPIRVNKASQ 103
A+ +N + KP+ + A +
Sbjct: 386 LRALSEMNGKMIGRKPLYIALAQR 409
>At3g14100 oligouridylate binding protein, putative
Length = 427
Score = 115 bits (288), Expect = 4e-26
Identities = 65/174 (37%), Positives = 101/174 (57%), Gaps = 7/174 (4%)
Query: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
+ YVGN+ Q++E LL E+F GPV + + + YGFV + A AI
Sbjct: 60 SVYVGNIHTQVTEPLLQEIFTSTGPVESSKL----IRKDKSSYGFVHYFDRRSAALAILS 115
Query: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN L+G+PI+VN A + D + N+F+G+L P+V + LY +FS F ++ +
Sbjct: 116 LNGRHLFGQPIKVNWAYATGQREDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC-SDAR 174
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+M D TG SRGFGF+S+ + + + +AI MNG++L +RQI ++A K T G+
Sbjct: 175 VMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGD 228
Score = 76.3 bits (186), Expect = 3e-14
Identities = 60/205 (29%), Positives = 97/205 (47%), Gaps = 42/205 (20%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
+VG+L P++++ L++ F + V D+ T + +G+GFV FR+++DA AI +N
Sbjct: 147 FVGDLSPEVTDATLYQSFSVFSSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMN 206
Query: 88 MIKLYGKPIRVN-----------KASQDKKS---LDVGAN-------------------- 113
L + IR N K S D KS L G++
Sbjct: 207 GKWLSSRQIRCNWATKGATSGDDKLSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTT 266
Query: 114 LFIGNLDPDVDEKLLYDTFSAFGV-IVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
+++GNL P+V + L+ F A G ++ ++ RD +GFGF+ Y++ + AI+
Sbjct: 267 VYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRD------KGFGFVRYNTHPEAALAIQ 320
Query: 173 AMNGQ-YLCNRQITVSYAYKKDTKG 196
N Q YL NRQI S+ K G
Sbjct: 321 MGNTQPYLFNRQIKCSWGNKPTPPG 345
Score = 40.0 bits (92), Expect = 0.002
Identities = 27/81 (33%), Positives = 43/81 (52%), Gaps = 9/81 (11%)
Query: 10 GANLLGQHSAERN-QDATAYVGNLDPQISEELLWELF--VQAGPVVNVYVPKDRVTNQHQ 66
G L + + E N Q T YVGNL P++++ L F + AG + V V +D+
Sbjct: 249 GKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGAGVIEEVRVQRDK------ 302
Query: 67 GYGFVEFRSEEDADYAIKVLN 87
G+GFV + + +A AI++ N
Sbjct: 303 GFGFVRYNTHPEAALAIQMGN 323
>At4g16290 FCA delta protein
Length = 533
Score = 114 bits (286), Expect = 7e-26
Identities = 116/393 (29%), Positives = 169/393 (42%), Gaps = 55/393 (13%)
Query: 15 GQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFR 74
G ++R+ +VG++ +EE + F Q G V+ V + KD+ T Q QG FV++
Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
Query: 75 SEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYD 130
+ +DAD AI+ L N I L G P++V A +++ + + LF+G+L+ EK + +
Sbjct: 170 TSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEE 229
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVS 187
F FG V + +MRD + SRG GF+ Y S E + +AI+ +NG Y CN+ + V
Sbjct: 230 IFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287
Query: 188 YAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPR 247
+A K K A V S P Q ASGP N ++G + P R
Sbjct: 288 FAEPKRPKPGESREMAPPVGLGSGPRFQ--------ASGPRPTSNFGDSSGDVSHTNPWR 339
Query: 248 P-FANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPP--PM-- 302
P + V PP I+ P P PGQ QG P+ G+PP P+
Sbjct: 340 PATSRNVGPPSNTGIRGAGSDFP-------PKPGQATL-PSNQGGPLGGYGVPPLNPLPV 391
Query: 303 ----------QQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQG 352
QQ R P P QG P PL P + G Q P Q
Sbjct: 392 PGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRPQTNFPGAQ------APLQNPY 445
Query: 353 GHPMGYPQNSMPP---------PPPPNHHGMRP 376
+ P + +PP P P + +RP
Sbjct: 446 AYSSQLPTSQLPPQQNISRATAPQTPLNINLRP 478
>At4g16280 FCA gamma protein
Length = 747
Score = 114 bits (286), Expect = 7e-26
Identities = 116/393 (29%), Positives = 169/393 (42%), Gaps = 55/393 (13%)
Query: 15 GQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFR 74
G ++R+ +VG++ +EE + F Q G V+ V + KD+ T Q QG FV++
Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169
Query: 75 SEEDADYAIKVL-NMIKLYG--KPIRVNKASQDKKSL-DVGANLFIGNLDPDVDEKLLYD 130
+ +DAD AI+ L N I L G P++V A +++ + + LF+G+L+ EK + +
Sbjct: 170 TSKDADRAIRALHNQITLPGGTGPVQVRYADGERERIGTLEFKLFVGSLNKQATEKEVEE 229
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYL---CNRQITVS 187
F FG V + +MRD + SRG GF+ Y S E + +AI+ +NG Y CN+ + V
Sbjct: 230 IFLQFG-HVEDVYLMRD-EYRQSRGCGFVKYSSKETAMAAIDGLNGTYTMRGCNQPLIVR 287
Query: 188 YAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPR 247
+A K K A V S P Q ASGP N ++G + P R
Sbjct: 288 FAEPKRPKPGESREMAPPVGLGSGPRFQ--------ASGPRPTSNFGDSSGDVSHTNPWR 339
Query: 248 P-FANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPP--PM-- 302
P + V PP I+ P P PGQ QG P+ G+PP P+
Sbjct: 340 PATSRNVGPPSNTGIRGAGSDFP-------PKPGQATL-PSNQGGPLGGYGVPPLNPLPV 391
Query: 303 ----------QQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQG 352
QQ R P P QG P PL P + G Q P Q
Sbjct: 392 PGVSSSATLQQQNRAAGQHITPLKKPLHSPQGLPLPLRPQTNFPGAQ------APLQNPY 445
Query: 353 GHPMGYPQNSMPP---------PPPPNHHGMRP 376
+ P + +PP P P + +RP
Sbjct: 446 AYSSQLPTSQLPPQQNISRATAPQTPLNINLRP 478
>At1g17370 oligouridylate binding protein, putative
Length = 419
Score = 110 bits (274), Expect = 2e-24
Identities = 62/174 (35%), Positives = 102/174 (57%), Gaps = 7/174 (4%)
Query: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
+ YVGN+ Q++E LL E+F GPV + + + + YGFV + A AI
Sbjct: 55 SVYVGNIHIQVTEPLLQEVFAGTGPVESCKL----IRKEKSSYGFVHYFDRRSAGLAILS 110
Query: 86 LNMIKLYGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPK 143
LN L+G+PI+VN A + D + N+F+G+L P+V + +L+ FS + ++ +
Sbjct: 111 LNGRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC-SDAR 169
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGE 197
+M D TG SRGFGF+S+ + + + +AI+ + G++L +RQI ++A K T GE
Sbjct: 170 VMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGE 223
Score = 67.4 bits (163), Expect = 1e-11
Identities = 77/328 (23%), Positives = 133/328 (40%), Gaps = 91/328 (27%)
Query: 10 GANLLGQ-------HSAERNQDATA----YVGNLDPQISEELLWELFVQAGPVVNVYVPK 58
G +L GQ +++ + +D ++ +VG+L P++++ +L+ F + V
Sbjct: 113 GRHLFGQPIKVNWAYASGQREDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMW 172
Query: 59 DRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKAS------QDKKSLDVGA 112
D+ T + +G+GFV FR+++DA AI + L + IR N A+ +DK+S D +
Sbjct: 173 DQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATKGATSGEDKQSSDSKS 232
Query: 113 ----------------------------NLFIGNLDPDVDEKLLYDTFSAFGV-IVTNPK 143
+++GNL P+V + L+ F + G ++ +
Sbjct: 233 VVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHSLGAGVIEEVR 292
Query: 144 IMRDPDTGNSRGFGFISYDSFEASDSAIEAMN-GQYLCNRQITVSYAYKKDTKGERHGTP 202
+ RD +GFGF+ Y + + AI+ N YL RQ+ S+ K G
Sbjct: 293 VQRD------KGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMKCSWGSKPTPAG------ 340
Query: 203 AERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQ 262
ASNP PP+ PAP+P ++ +A + Q
Sbjct: 341 -----TASNPLP------------PPA-----------PAPIPGFSASDLLA----YERQ 368
Query: 263 PPPPQAPAFQPMQMPPPGQQVWHQQQQG 290
+ PM P GQ + Q G
Sbjct: 369 LAMSKMAGMNPMMHHPQGQHAFKQAAMG 396
>At5g19350 DNA binding protein ACBF - like
Length = 425
Score = 103 bits (258), Expect = 1e-22
Identities = 63/203 (31%), Positives = 105/203 (51%), Gaps = 5/203 (2%)
Query: 17 HSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSE 76
H + T ++G+L + E L F Q G +V+V V ++++T Q +GYGF+EF S
Sbjct: 16 HPQTLEEVRTLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISH 75
Query: 77 EDADYAIKVLNMIKLYGKPI--RVNKASQDK-KSLDVGAN--LFIGNLDPDVDEKLLYDT 131
A+ ++ N ++ G + R+N AS + +D G + +F+G+L PDV + LL +T
Sbjct: 76 AAAERTLQTYNGTQMPGTELTFRLNWASFGSGQKVDAGPDHSIFVGDLAPDVTDYLLQET 135
Query: 132 FSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYK 191
F V K++ DP TG S+G+GF+ + + A+ MNG Y R + +S A
Sbjct: 136 FRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATP 195
Query: 192 KDTKGERHGTPAERVLAASNPTA 214
K G + + V + P+A
Sbjct: 196 KKNVGVQQQYVTKAVYPVTVPSA 218
Score = 62.0 bits (149), Expect = 5e-10
Identities = 47/201 (23%), Positives = 93/201 (45%), Gaps = 43/201 (21%)
Query: 24 DATAYVGNLDPQISEELLWELF-VQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYA 82
D + +VG+L P +++ LL E F V V V D T + +GYGFV+F E + + A
Sbjct: 115 DHSIFVGDLAPDVTDYLLQETFRVHYSSVRGAKVVTDPSTGRSKGYGFVKFAEESERNRA 174
Query: 83 IKVLNMIKLYGKPIRVNKASQDKKSLDVG------------------------------- 111
+ +N + +P+R++ A+ KK++ V
Sbjct: 175 MAEMNGLYCSTRPMRISAATP-KKNVGVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESD 233
Query: 112 ---ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASD 168
+ + NLD +V E+ L FS G ++ ++ P T +G+G++ + + +++
Sbjct: 234 VTCTTISVANLDQNVTEEELKKAFSQLGEVI----YVKIPAT---KGYGYVQFKTRPSAE 286
Query: 169 SAIEAMNGQYLCNRQITVSYA 189
A++ M GQ + + + +S++
Sbjct: 287 EAVQRMQGQVIGQQAVRISWS 307
Score = 40.8 bits (94), Expect = 0.001
Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 6/59 (10%)
Query: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
T V NLD ++EE L + F Q G V+ V +P + GYG+V+F++ A+ A++
Sbjct: 238 TISVANLDQNVTEEELKKAFSQLGEVIYVKIPATK------GYGYVQFKTRPSAEEAVQ 290
>At5g07750 putative protein
Length = 1289
Score = 101 bits (252), Expect = 6e-22
Identities = 63/162 (38%), Positives = 67/162 (40%), Gaps = 18/162 (11%)
Query: 226 GPPSLPNAPQANGTIPAPVPPRPFANGVAPPP----IHVIQPPPPQAPAFQPMQMPPPGQ 281
G P P P +G P P PP P G PPP +H PPPP P F Q PPP
Sbjct: 1021 GAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPPPMFGGAQPPPPPP 1080
Query: 282 QVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQV 341
P M+ G PPP PP PPPPP M G P PPP + G
Sbjct: 1081 MRGGAPPPPPPPMRGGAPPPP----PPPMRGGAPPPPPPPMHGGAPPPPPPPMRGGA--- 1133
Query: 342 WRPPPPPQQQGGHPMGYPQNSMPP----PPPPNHHGMRPPSG 379
PPPP GG G P PP P PP G RPP G
Sbjct: 1134 ---PPPPPPPGGRGPGAPPPPPPPGGRAPGPPPPPGPRPPGG 1172
Score = 98.6 bits (244), Expect = 5e-21
Identities = 65/179 (36%), Positives = 74/179 (41%), Gaps = 20/179 (11%)
Query: 202 PAERVLAASNP---TAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPI 258
P + +A +P TA P F++ L P + G+ P P PP P PPP
Sbjct: 902 PLHGISSAPSPPVKTAPPPPPPPPFSNAHSVLSPPPPSYGSPPPPPPPPPSYGSPPPPP- 960
Query: 259 HVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPP 318
PPPP + P PPPG P PPP F H +PPPPP
Sbjct: 961 ----PPPPSYGSPPPPPPPPPGYGSPPPPPPPPPSYGSPPPPPPPPF--SHVSSIPPPPP 1014
Query: 319 PQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPP 377
P M G P PPP M G PPPPP GG P PPPPPP HG PP
Sbjct: 1015 PPPMHGGAPPPPPPPPMHGGAP--PPPPPPPMHGGAP--------PPPPPPPMHGGAPP 1063
Score = 98.2 bits (243), Expect = 7e-21
Identities = 66/191 (34%), Positives = 73/191 (37%), Gaps = 29/191 (15%)
Query: 210 SNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFAN---------------GVA 254
SN + S P + S PP P P P P PP + +
Sbjct: 927 SNAHSVLSPPPPSYGSPPPPPPPPPSYGSPPPPPPPPPSYGSPPPPPPPPPGYGSPPPPP 986
Query: 255 PPPIHVIQPPPPQAPAFQ-----PMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPH 309
PPP PPPP P F P PPP P M G PPP PP
Sbjct: 987 PPPPSYGSPPPPPPPPFSHVSSIPPPPPPPPMHGGAPPPPPPPPMHGGAPPPPPP--PPM 1044
Query: 310 SMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP---QNSMPPP 366
PPPPPP M G P PPP + G Q PPPPP +GG P P + PPP
Sbjct: 1045 HGGAPPPPPPPPMHGGAPPPPPPPMFGGAQ----PPPPPPMRGGAPPPPPPPMRGGAPPP 1100
Query: 367 PPPNHHGMRPP 377
PPP G PP
Sbjct: 1101 PPPPMRGGAPP 1111
Score = 80.9 bits (198), Expect = 1e-15
Identities = 55/143 (38%), Positives = 59/143 (40%), Gaps = 25/143 (17%)
Query: 226 GPPSLPNAPQANGTIPAPVPP-RPFANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVW 284
G P P P G P P PP R A PPP+ PPPP P PPP
Sbjct: 1060 GAPPPPPPPMFGGAQPPPPPPMRGGAPPPPPPPMRGGAPPPPPPPMRGGAPPPPP----- 1114
Query: 285 HQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRP 344
P M G PPP PP PPPPPP G +GP P PPP G+ P
Sbjct: 1115 -------PPMHGGAPPPPP---PPMRGGAPPPPPPPGGRGPGAP-PPPPPPGGRAPGPPP 1163
Query: 345 PPPPQQQGGHPMGYPQNSMPPPP 367
PP P+ GG P PPPP
Sbjct: 1164 PPGPRPPGGGP--------PPPP 1178
Score = 65.9 bits (159), Expect = 4e-11
Identities = 57/203 (28%), Positives = 72/203 (35%), Gaps = 56/203 (27%)
Query: 212 PTAQKSRPHTLFASGPPSLPNAPQAN-----GTIPAPVPPRPFANGVAPPPIHVIQPPPP 266
P RP++ PP P P ++ GT+ P PP P P + PPPP
Sbjct: 675 PPFSSERPNSGTVLPPPPPPPPPFSSERPNSGTVLPPPPPPPLPFSSERPNSGTVLPPPP 734
Query: 267 ---------------------QAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQF 305
QAP P PPP + Q+ + +P P
Sbjct: 735 SPPWKSVYASALAIPAICSTSQAPTSSPTP-PPPPPAYYSVGQKSSDLQTSQLPSP---- 789
Query: 306 RPPHSMQMPPPPPP--------QGMQGPPRPLPPP---SVMAGQQQVWRPPPPPQQQGG- 353
PP PPPPPP + + PP P PPP SV + + PPPPP
Sbjct: 790 -PP-----PPPPPPFASVRRNSETLLPPPPPPPPPPFASVRRNSETLLPPPPPPPPWKSL 843
Query: 354 -------HPMGYPQNSMPPPPPP 369
H +S PPPPPP
Sbjct: 844 YASTFETHEACSTSSSPPPPPPP 866
Score = 62.0 bits (149), Expect = 5e-10
Identities = 47/127 (37%), Positives = 52/127 (40%), Gaps = 21/127 (16%)
Query: 214 AQKSRPHTLFASGPPSLPNAPQANGTIPAPVPP-RPFANGVAPPPIHVIQPPPPQAP--A 270
AQ P + PP P P G P P PP R A PPP+H PPPP P
Sbjct: 1073 AQPPPPPPMRGGAPPP-PPPPMRGGAPPPPPPPMRGGAPPPPPPPMHGGAPPPPPPPMRG 1131
Query: 271 FQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLP 330
P PPPG + G PPP PP + P PPPP G + PP P
Sbjct: 1132 GAPPPPPPPGGR------------GPGAPPPP----PPPGGRAPGPPPPPGPR-PPGGGP 1174
Query: 331 PPSVMAG 337
PP M G
Sbjct: 1175 PPPPMLG 1181
Score = 62.0 bits (149), Expect = 5e-10
Identities = 55/203 (27%), Positives = 69/203 (33%), Gaps = 35/203 (17%)
Query: 200 GTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPPIH 259
G+ + + A PT S P ++ S A +G IP + V+ P +
Sbjct: 537 GSYKDSMHVAYPPTRINSAPASITTSLKDG-KRATSPDGVIPKDAKTKYLRASVSSPDMR 595
Query: 260 VIQP-----------PPPQAPAFQPMQMPPP-------GQQVWHQQQQGQPMMQQGMPPP 301
P P P P Q PPP + V H Q PPP
Sbjct: 596 SRAPICSSPDSSPKETPSSLPPASPHQAPPPLPSLTSEAKTVLHSSQAVASPPPPPPPPP 655
Query: 302 MQQFRPPHSMQMPPPPPPQGMQGPPRP-----LPPPSVMAGQQQVWRPPPPPQQQGGHPM 356
+ + + Q+PPPPPP RP LPPP PPPPP P
Sbjct: 656 LPTYSHYQTSQLPPPPPPPPPFSSERPNSGTVLPPP-----------PPPPPPFSSERPN 704
Query: 357 GYPQNSMPPPPPPNHHGMRPPSG 379
PPPPP RP SG
Sbjct: 705 SGTVLPPPPPPPLPFSSERPNSG 727
Score = 54.3 bits (129), Expect = 1e-07
Identities = 55/206 (26%), Positives = 68/206 (32%), Gaps = 63/206 (30%)
Query: 203 AERVLAASNPTAQKSRPHTLFASGPPSLPN-APQANGTIPAPVPPRPFANGVAPPPIHVI 261
A+ VL +S A P PP LP + +P P PP P + P V+
Sbjct: 634 AKTVLHSSQAVASPPPPPP-----PPPLPTYSHYQTSQLPPPPPPPPPFSSERPNSGTVL 688
Query: 262 QPPPPQAPAFQPMQ------MPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRP--PHSMQM 313
PPPP P F + +PPP PPP F P+S +
Sbjct: 689 PPPPPPPPPFSSERPNSGTVLPPP-------------------PPPPLPFSSERPNSGTV 729
Query: 314 PPPPP--------------------PQGMQGPPRPLPPP----------SVMAGQQQVWR 343
PPPP Q P P PPP S + Q
Sbjct: 730 LPPPPSPPWKSVYASALAIPAICSTSQAPTSSPTPPPPPPAYYSVGQKSSDLQTSQLPSP 789
Query: 344 PPPPPQQQGGHPMGYPQNSMPPPPPP 369
PPPPP + +PPPPPP
Sbjct: 790 PPPPPPPPFASVRRNSETLLPPPPPP 815
Score = 53.5 bits (127), Expect = 2e-07
Identities = 48/192 (25%), Positives = 62/192 (32%), Gaps = 47/192 (24%)
Query: 228 PSLPNAPQANGTIPAPVPPRP--FANGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWH 285
P++ + QA + P P PP P ++ G + Q P P P PPP V
Sbjct: 749 PAICSTSQAPTSSPTPPPPPPAYYSVGQKSSDLQTSQLPSPPPPP-----PPPPFASVRR 803
Query: 286 QQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPP-----------------QGMQGPPRP 328
+ P PPP R +PPPPPP PP P
Sbjct: 804 NSETLLPPPPPPPPPPFASVRRNSETLLPPPPPPPPWKSLYASTFETHEACSTSSSPPPP 863
Query: 329 LPPP-----SVMAGQQQVWRPPPPPQQQ---------------GGHPMGYPQNSMPPPPP 368
PPP + + PPP P P + + PPPPP
Sbjct: 864 PPPPPFSPLNTTKANDYILPPPPLPYTSIAPSPSVKILPLHGISSAPSPPVKTAPPPPPP 923
Query: 369 P---NHHGMRPP 377
P N H + P
Sbjct: 924 PPFSNAHSVLSP 935
>At5g51300 unknown protein
Length = 804
Score = 100 bits (249), Expect = 1e-21
Identities = 87/271 (32%), Positives = 117/271 (43%), Gaps = 48/271 (17%)
Query: 113 NLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIE 172
NL+IG L P +++ L + FS+FG IV K+++D TG S+G+GF+ Y + +++A++
Sbjct: 481 NLYIGFLPPMLEDDGLINLFSSFGEIVM-AKVIKDRVTGLSKGYGFVKYADVQMANTAVQ 539
Query: 173 AMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTLFASGPPSLPN 232
AMNG R + V A K G PA P PPS N
Sbjct: 540 AMNGYRFEGRTLAVRIAGKSPPPIAPPGPPA---------------PQPPTQGYPPS--N 582
Query: 233 APQANGTIPAPVPPRPFA-NGVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQ 291
P P P + +A G + P+ P P P++ P +PPP +H GQ
Sbjct: 583 QP------PGAYPSQQYATGGYSTAPV----PWGPPVPSYSPYALPPPPPGSYH-PVHGQ 631
Query: 292 PMMQQGM--PPPMQQFRPPHSMQMPPPPPPQG-MQGPPRPLPPPSVMAGQQQVWRPPPP- 347
M GM PPP PPH Q PPP Q P+ PP V A PP
Sbjct: 632 HMPPYGMQYPPP-----PPHVTQAPPPGTTQNPSSSEPQQSFPPGVQADSGAATSSIPPN 686
Query: 348 -----PQQQGGHP--MGYPQ--NSMPPPPPP 369
G P M YP N++PPP PP
Sbjct: 687 VYGSSVTAMPGQPPYMSYPSYYNAVPPPTPP 717
Score = 54.7 bits (130), Expect = 8e-08
Identities = 31/97 (31%), Positives = 52/97 (52%), Gaps = 1/97 (1%)
Query: 7 PGVGANLLGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQ 66
PG+G+ S E ++ Y+G L P + ++ L LF G +V V KDRVT +
Sbjct: 463 PGLGSTPTKPPSKEYDE-TNLYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSK 521
Query: 67 GYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQ 103
GYGFV++ + A+ A++ +N + G+ + V A +
Sbjct: 522 GYGFVKYADVQMANTAVQAMNGYRFEGRTLAVRIAGK 558
Score = 47.4 bits (111), Expect = 1e-05
Identities = 41/131 (31%), Positives = 44/131 (33%), Gaps = 36/131 (27%)
Query: 252 GVAPPPIHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPP---PMQQFRPP 308
G +PPPI PP PQ P QG P Q PP P QQ+
Sbjct: 557 GKSPPPIAPPGPPAPQPPT------------------QGYPPSNQ--PPGAYPSQQYATG 596
Query: 309 HSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPP 368
P P GPP P P + PPPP H P M PPP
Sbjct: 597 GYSTAPVP------WGPPVPSYSPYALP-------PPPPGSYHPVHGQHMPPYGMQYPPP 643
Query: 369 PNHHGMRPPSG 379
P H PP G
Sbjct: 644 PPHVTQAPPPG 654
Score = 32.3 bits (72), Expect = 0.44
Identities = 39/171 (22%), Positives = 52/171 (29%), Gaps = 42/171 (24%)
Query: 199 HGTPAERVLAASNPTAQKSRPHTLFASGPPSLPNAPQANGTIPAPVPPRPFANGVAPPP- 257
H T A NP++ S P F P +G + +PP + + V P
Sbjct: 646 HVTQAPPPGTTQNPSS--SEPQQSFP------PGVQADSGAATSSIPPNVYGSSVTAMPG 697
Query: 258 ----------IHVIQPPPPQAPAFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRP 307
+ + PP P APA G W P + P
Sbjct: 698 QPPYMSYPSYYNAVPPPTPPAPASSTDHSQNMGNMPW----ANNPSVS----------TP 743
Query: 308 PHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQ---VWRPPPPPQQQGGHP 355
HS + P P P PP+V Q W P PP Q +P
Sbjct: 744 DHSQGLVNAP------WAPNPPMPPTVGYSQSMGNVPWAPKPPVQPPAENP 788
>At3g19130 nuclear acid binding protein, putative
Length = 435
Score = 100 bits (248), Expect = 2e-21
Identities = 63/191 (32%), Positives = 106/191 (54%), Gaps = 7/191 (3%)
Query: 26 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 85
T +VG+L + E L F G V +V V ++++T+Q +GYGFVEF S A+ ++
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 86 LN--MIKLYGKPIRVNKAS---QDKKSLDVGANL--FIGNLDPDVDEKLLYDTFSAFGVI 138
+ ++ +P R+N AS +K++++ G +L F+G+L PDV + LL++TFS
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 139 VTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER 198
V + K++ D +TG S+G+GF+ + A+ MNG Y NRQ+ V A K +
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQ 288
Query: 199 HGTPAERVLAA 209
++ V+ A
Sbjct: 289 QQHSSQAVILA 299
Score = 67.8 bits (164), Expect = 9e-12
Identities = 52/205 (25%), Positives = 93/205 (45%), Gaps = 39/205 (19%)
Query: 16 QHSAERNQDATAYVGNLDPQISEELLWELFVQAGP-VVNVYVPKDRVTNQHQGYGFVEFR 74
+ + E D + +VG+L P +++ LL E F P V + V D T + +GYGFV F
Sbjct: 193 KRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVRFG 252
Query: 75 SEEDADYAIKVLNMIKLYGKPIRVNKASQDKK----------------------SLDVG- 111
E + A+ +N + +RV A+ + S+ G
Sbjct: 253 DENERSRALTEMNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGS 312
Query: 112 --------ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDS 163
A +F+G +DPDV ++ L FS FG +V+ ++ P +G GF+ +
Sbjct: 313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVS----VKIP---VGKGCGFVQFAD 365
Query: 164 FEASDSAIEAMNGQYLCNRQITVSY 188
++++ AIE++NG + + +S+
Sbjct: 366 RKSAEDAIESLNGTVIGKNTVRLSW 390
Score = 47.4 bits (111), Expect = 1e-05
Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 9/86 (10%)
Query: 5 IAPGVGANL---LGQHSAERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRV 61
+A G G+N G S + +AT +VG +DP + +E L + F Q G VV+V +P +
Sbjct: 298 LAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIPVGK- 356
Query: 62 TNQHQGYGFVEFRSEEDADYAIKVLN 87
G GFV+F + A+ AI+ LN
Sbjct: 357 -----GCGFVQFADRKSAEDAIESLN 377
Score = 42.4 bits (98), Expect = 4e-04
Identities = 34/140 (24%), Positives = 65/140 (46%), Gaps = 10/140 (7%)
Query: 103 QDKKSLDVGAN-----LFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFG 157
Q K++D G+ L++G+L +DE L+ FS G V++ K++R+ T S G+G
Sbjct: 94 QQHKAIDRGSGDDVKTLWVGDLLHWMDETYLHSCFSHTGE-VSSVKVIRNKLTSQSEGYG 152
Query: 158 FISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGER----HGTPAERVLAASNPT 213
F+ + S A++ ++ +G + N + + GE+ +G + +P
Sbjct: 153 FVEFLSRAAAEEVLQNYSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPD 212
Query: 214 AQKSRPHTLFASGPPSLPNA 233
H F+ PS+ +A
Sbjct: 213 VTDVLLHETFSDRYPSVKSA 232
Score = 29.6 bits (65), Expect = 2.9
Identities = 30/93 (32%), Positives = 34/93 (36%), Gaps = 29/93 (31%)
Query: 270 AFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPL 329
A P Q PP Q W QQQQ Q QQ M +MQ PP MQ
Sbjct: 16 ATPPNQQTPPPPQQWQQQQQQQ---QQWMA----------AMQYPPAAAMMMMQ------ 56
Query: 330 PPPSVMAGQQQVWRPPPP--PQQQGGHPMGYPQ 360
QQQ+ P P QG + +PQ
Sbjct: 57 --------QQQMLMYPHQYVPYNQGPYQQHHPQ 81
>At4g24770 31 kDa RNA binding protein (rbp31)
Length = 329
Score = 99.0 bits (245), Expect = 4e-21
Identities = 61/180 (33%), Positives = 100/180 (54%), Gaps = 8/180 (4%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
E +++A +VGNL ++ + L LF QAG V V +R T+Q +G+GFV S ++A
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 80 DYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ A++ N L G+ + VNKA+ + + + +++GNL DVD L F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
S G +V +++ D +TG SRGFGF++ + + AI A++GQ L R I V+ A ++
Sbjct: 265 SEHGKVV-EARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEER 323
Score = 52.8 bits (125), Expect = 3e-07
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 4/104 (3%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
A LF+GNL DV+ + L F G + +++ + +T SRGFGF++ S + +++A+
Sbjct: 150 AKLFVGNLAYDVNSQALAMLFEQAGTVEI-AEVIYNRETDQSRGFGFVTMSSVDEAETAV 208
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGERHG---TPAERVLAASNP 212
E N L R +TV+ A + ++ ER PA RV + P
Sbjct: 209 EKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLP 252
>At5g50250 RNA-binding protein-like
Length = 289
Score = 96.7 bits (239), Expect = 2e-20
Identities = 60/180 (33%), Positives = 99/180 (54%), Gaps = 8/180 (4%)
Query: 20 ERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDA 79
E ++A +VGNL + + L LF QAG V V +R T+Q +G+GFV + E+A
Sbjct: 108 EPPEEAKLFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEA 167
Query: 80 DYAIKVLNMIKLYGKPIRVNKAS-------QDKKSLDVGANLFIGNLDPDVDEKLLYDTF 132
+ A++ N ++ G+ + VN+A+ + + D +++GNL DVD L F
Sbjct: 168 EKAVEKFNSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLF 227
Query: 133 SAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
S G +V + +++ D +TG SRGFGF+ + + AI A++GQ L R I V+ A ++
Sbjct: 228 SEHGKVV-DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVNVAEER 286
Score = 56.6 bits (135), Expect = 2e-08
Identities = 30/87 (34%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 112 ANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAI 171
A LF+GNL DVD + L F G + + +++ + DT SRGFGF++ + E ++ A+
Sbjct: 113 AKLFVGNLPYDVDSQALAMLFEQAGTVEIS-EVIYNRDTDQSRGFGFVTMSTVEEAEKAV 171
Query: 172 EAMNGQYLCNRQITVSYAYKKDTKGER 198
E N + R++TV+ A + ++ ER
Sbjct: 172 EKFNSFEVNGRRLTVNRAAPRGSRPER 198
>At1g61080 hypothetical protein
Length = 907
Score = 92.8 bits (229), Expect = 3e-19
Identities = 56/157 (35%), Positives = 64/157 (40%), Gaps = 15/157 (9%)
Query: 223 FASGPPSLPNAPQANGTIPAPVPPRPFANGVA------PPPIHVIQPPPPQAP----AFQ 272
FA PP+ P G+ P P PP P +A PPP + PPPP P A
Sbjct: 490 FAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGTAAAP 549
Query: 273 PMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPP 332
P PPPG Q PM + PP S PPPPPP + P PPP
Sbjct: 550 PPPPPPPGTQAAPPPPPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPPMPLANGATPPPPP 609
Query: 333 SVMAGQQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPP 369
MA PPPPP + MG + PPPPP
Sbjct: 610 PPMAMANGAAGPPPPPPR-----MGMANGAAGPPPPP 641
Score = 84.3 bits (207), Expect = 1e-16
Identities = 64/179 (35%), Positives = 71/179 (38%), Gaps = 37/179 (20%)
Query: 225 SGPPSLPNAPQANGTIPAPVPPRP---------FANGVAPP------PIHVIQPPPPQAP 269
S PP+ P A A P P PP P FA PP P+ PPPP P
Sbjct: 439 SPPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPP 498
Query: 270 AFQPMQ---MPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPP 326
AF+P++ PPP P PPP PP PPPPPP PP
Sbjct: 499 AFKPLKGSAPPPPPPPPLPTTIAAPP---PPPPPPRAAVAPP-----PPPPPPGTAAAPP 550
Query: 327 RPLPPPSVMAGQQQVWRPPPPPQQQGG-----HPMGYPQNSMPPPPPPN---HHGMRPP 377
P PPP A PPPPP Q PMG + PPPPPP +G PP
Sbjct: 551 PPPPPPGTQAAPPP---PPPPPMQNRAPSPPPMPMGNSGSGGPPPPPPPMPLANGATPP 606
Score = 81.3 bits (199), Expect = 8e-16
Identities = 53/155 (34%), Positives = 61/155 (39%), Gaps = 21/155 (13%)
Query: 227 PPSLPNAPQANGTIPAPVPPRPFANGVAPPPIHVIQPPPPQAPAFQPMQM---PPPGQQV 283
PP P ++P P PP P V P PPPP PA P++ PPP
Sbjct: 440 PPPTPPIADIAISMPPPPPPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPA 499
Query: 284 WHQQQQGQPMMQQGMPPPMQQFRPPHSMQMPPPPPPQGMQGPPRPLPPPSVMAGQQQVWR 343
+ + P P P PP PPPPPP+ PP P PPP A
Sbjct: 500 FKPLKGSAPPPPPPPPLPTTIAAPP-----PPPPPPRAAVAPPPPPPPPGTAAA------ 548
Query: 344 PPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPPS 378
PPPPP G + PPPPPP R PS
Sbjct: 549 PPPPPPPPG-------TQAAPPPPPPPPMQNRAPS 576
Score = 72.8 bits (177), Expect = 3e-13
Identities = 55/160 (34%), Positives = 68/160 (42%), Gaps = 28/160 (17%)
Query: 227 PPSLPNAPQANGTIPAPVPPRPFAN-GVAPPPIHVIQPP--PPQAPAFQPMQ--MPPPGQ 281
PP L A+ +P+P P P A+ ++ PP PP PP PA P++ PPP
Sbjct: 424 PPPLSFIKTASLPLPSPPPTPPIADIAISMPP-----PPPPPPPPPAVMPLKHFAPPPPP 478
Query: 282 QVWHQQQQGQPMMQQGMPPPM-QQFRPPHSMQMPPPPP---PQGMQGPPRPLPPPSVMAG 337
+ P+ PPP F+P PPPPP P + PP P PPP
Sbjct: 479 PL---PPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPPPLPTTIAAPPPPPPPP----- 530
Query: 338 QQQVWRPPPPPQQQGGHPMGYPQNSMPPPPPPNHHGMRPP 377
+ V PPPPP P G PPPPPP PP
Sbjct: 531 RAAVAPPPPPP------PPGTAAAPPPPPPPPGTQAAPPP 564
Score = 53.1 bits (126), Expect = 2e-07
Identities = 43/127 (33%), Positives = 51/127 (39%), Gaps = 42/127 (33%)
Query: 255 PPPIHVIQPPPPQAP------AFQPMQMPPPGQQVWHQQQQGQPMMQQGMPPPMQQFRPP 308
PPP PPPP P A P+ PPP + + MPPP
Sbjct: 417 PPP-----PPPPPPPLSFIKTASLPLPSPPPTPPIAD--------IAISMPPPP------ 457
Query: 309 HSMQMPPPPPPQGMQ-----GPPRPLP-PPSVMAGQQQVWRPPPPPQQQGGHPMGYPQNS 362
PPPPPP + PP P P PP+VM + PPPP P+ + S
Sbjct: 458 -----PPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFA---PPPPTPPAFKPL---KGS 506
Query: 363 MPPPPPP 369
PPPPPP
Sbjct: 507 APPPPPP 513
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 9/70 (12%)
Query: 309 HSMQMPPPPPPQGMQGP---------PRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMGYP 359
+S Q+ PPPPP P P P PPP+ + PPPPP +
Sbjct: 410 NSSQLFPPPPPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPPPPPPPPAVMPL 469
Query: 360 QNSMPPPPPP 369
++ PPPPPP
Sbjct: 470 KHFAPPPPPP 479
Score = 43.5 bits (101), Expect = 2e-04
Identities = 29/85 (34%), Positives = 32/85 (37%), Gaps = 30/85 (35%)
Query: 303 QQFRPPHSMQMPPPPPPQGMQ-----GPPRPLPPPSVMAGQQQVWRPPPPPQQQGGHPMG 357
Q F PP PPPPPP + P P PPP+ + PPPPP
Sbjct: 413 QLFPPP-----PPPPPPPPLSFIKTASLPLPSPPPTPPIADIAISMPPPPP--------- 458
Query: 358 YPQNSMPPPPPP-----NHHGMRPP 377
PPPPPP H PP
Sbjct: 459 ------PPPPPPAVMPLKHFAPPPP 477
>At2g36660 putative poly(A) binding protein
Length = 609
Score = 90.9 bits (224), Expect = 1e-18
Identities = 56/170 (32%), Positives = 95/170 (54%), Gaps = 5/170 (2%)
Query: 25 ATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIK 84
A+ YVG+L P ++E +L++ F + + +V + KD + + YG+ F S +DA+ AI+
Sbjct: 24 ASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIE 83
Query: 85 VLNMIKLYGKPIRV--NKASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNP 142
N L GK IRV + + D + VG N+F+ NL V +L D F FG IV+
Sbjct: 84 KKNNSLLNGKMIRVMWSVRAPDARRNGVG-NVFVKNLPESVTNAVLQDMFKKFGNIVSCK 142
Query: 143 KIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
+ + G SRG+GF+ ++ +A+ +AI+ +N + +++I V KK
Sbjct: 143 --VATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKK 190
Score = 84.7 bits (208), Expect = 7e-17
Identities = 63/212 (29%), Positives = 106/212 (49%), Gaps = 21/212 (9%)
Query: 28 YVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLN 87
Y+ NLD +SE+LL E F + G +V++ + KD +GY FV F + EDA A + +N
Sbjct: 204 YMKNLDADVSEDLLREKFAEFGKIVSLAIAKDE-NRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 88 MIKLYGKPIRVNKAS-----------------QDKKSLDVGANLFIGNLDPDVDEKLLYD 130
K K + V +A +++K + +N+++ N++ V E+ L
Sbjct: 263 GTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVTEEELRK 322
Query: 131 TFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAY 190
FS G I T+ K+M D + G S+GFGF+ + + E + A++ +GQ + + V+ A
Sbjct: 323 HFSQCGTI-TSTKLMCD-EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQ 380
Query: 191 KK-DTKGERHGTPAERVLAASNPTAQKSRPHT 221
KK D K + RV A + ++ P T
Sbjct: 381 KKEDRKMQLQVQFGNRVEARKSSSSASVNPGT 412
Score = 79.3 bits (194), Expect = 3e-15
Identities = 58/177 (32%), Positives = 92/177 (51%), Gaps = 6/177 (3%)
Query: 19 AERNQDATAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEED 78
A RN +V NL ++ +L ++F + G +V+ V + +GYGFV+F E+
Sbjct: 106 ARRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLE-DGKSRGYGFVQFEQEDA 164
Query: 79 ADYAIKVLNMIKLYGKPIRVNKASQDK---KSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
A AI+ LN + K I V K + K + NL++ NLD DV E LL + F+ F
Sbjct: 165 AHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEF 224
Query: 136 GVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKK 192
G IV + I +D + RG+ F+++D+ E + A E +NG ++ + V A KK
Sbjct: 225 GKIV-SLAIAKD-ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK 279
Score = 52.8 bits (125), Expect = 3e-07
Identities = 29/91 (31%), Positives = 52/91 (56%), Gaps = 1/91 (1%)
Query: 101 ASQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFIS 160
AS S V A+L++G+L P V E +LYD F+ F + T+ ++ +D +G S +G+ +
Sbjct: 13 ASSSGSSSPVTASLYVGDLHPSVTEGILYDAFAEFKSL-TSVRLCKDASSGRSLCYGYAN 71
Query: 161 YDSFEASDSAIEAMNGQYLCNRQITVSYAYK 191
+ S + ++ AIE N L + I V ++ +
Sbjct: 72 FLSRQDANLAIEKKNNSLLNGKMIRVMWSVR 102
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.315 0.136 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,389,455
Number of Sequences: 26719
Number of extensions: 700624
Number of successful extensions: 19967
Number of sequences better than 10.0: 753
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 315
Number of HSP's that attempted gapping in prelim test: 2813
Number of HSP's gapped (non-prelim): 3676
length of query: 379
length of database: 11,318,596
effective HSP length: 101
effective length of query: 278
effective length of database: 8,619,977
effective search space: 2396353606
effective search space used: 2396353606
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (28.1 bits)
Medicago: description of AC139882.5