BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139709.6 + phase: 0 
         (138 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

rps11 -chloroplast genome- ribosomal protein S11                      234  8e-63
At3g52580  ribosomal protein S14 like protein                          67  4e-12
At3g11510 40S ribosomal protein s14 like                               66  5e-12
At2g36160 40S ribosomal protein S14                                    66  5e-12
At1g31817 30S ribosomal like protein S11                               60  4e-10
At1g56500 unknown protein                                              28  1.2
At3g10420 unknown protein                                              27  4.4
At1g73170 unknown protein                                              27  4.4
At1g27180 disease resistance protein, putative                         26  7.5
At1g29200 hypothetical protein                                         25  9.8

>rps11 -chloroplast genome- ribosomal protein S11
          Length = 138

 Score =  234 bits (598), Expect = 8e-63
 Identities = 118/138 (85%), Positives = 126/138 (90%)

Query: 1   MAKSIPKIGSRKNGRIGSRKHPRKIPKGVIYVQASFNNTIVTVTDVRGRVISWSSAGSCG 60
           MAK I +IGSRKN R GSRK+ R+IPKGVI+VQASFNNTIVTVTDVRGRVISWSSAG+CG
Sbjct: 1   MAKPILRIGSRKNTRSGSRKNVRRIPKGVIHVQASFNNTIVTVTDVRGRVISWSSAGTCG 60

Query: 61  FKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIR 120
           F+GTRRGTPFAAQTAA NAIR VVDQGMQRA V IKGPGLGRDAALRAI RSGILL F+R
Sbjct: 61  FRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGLGRDAALRAIRRSGILLSFVR 120

Query: 121 DVTPIPHNGCRAPKKRRV 138
           DVTP+PHNGCR PKKRRV
Sbjct: 121 DVTPMPHNGCRPPKKRRV 138


>At3g52580  ribosomal protein S14 like protein
          Length = 150

 Score = 66.6 bits (161), Expect = 4e-12
 Identities = 45/119 (37%), Positives = 62/119 (51%), Gaps = 9/119 (7%)

Query: 28  GVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTR-RGTPFAAQTAAANAIRTVVDQ 86
           GV++V ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHVFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 87  GMQRAVVII--------KGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPKKRR 137
           G+    V +        K PG G  +ALRA+ARSG+ +  I DVTPIP +  R    RR
Sbjct: 88  GITAIHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146


>At3g11510 40S ribosomal protein s14 like
          Length = 150

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 44/119 (36%), Positives = 62/119 (51%), Gaps = 9/119 (7%)

Query: 28  GVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTR-RGTPFAAQTAAANAIRTVVDQ 86
           GV+++ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 87  GMQRAVVII--------KGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPKKRR 137
           G+    V +        K PG G  +ALRA+ARSG+ +  I DVTPIP +  R    RR
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146


>At2g36160 40S ribosomal protein S14
          Length = 150

 Score = 66.2 bits (160), Expect = 5e-12
 Identities = 44/119 (36%), Positives = 62/119 (51%), Gaps = 9/119 (7%)

Query: 28  GVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFKGTR-RGTPFAAQTAAANAIRTVVDQ 86
           GV+++ ASFN+T + VTD+ GR       G    K  R   +P+AA  AA +  +   + 
Sbjct: 28  GVVHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAMLAAQDVAQRCKEL 87

Query: 87  GMQRAVVII--------KGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCRAPKKRR 137
           G+    V +        K PG G  +ALRA+ARSG+ +  I DVTPIP +  R    RR
Sbjct: 88  GITAMHVKLRATGGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146


>At1g31817 30S ribosomal like protein S11
          Length = 314

 Score = 60.1 bits (144), Expect = 4e-10
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 10/120 (8%)

Query: 29  VIYVQASFNNTIVTVTDVRGRVISWSSAGSC-GFKGTRRGTPFAAQTAAANAIRTVVDQG 87
           +I+++   NNT VTVTD +G V   +++GS    KG R+ T + A   A N  R     G
Sbjct: 195 IIHIKMLRNNTFVTVTDSKGNVKCKATSGSLPDLKGGRKMTNYTADATAENIGRRAKAMG 254

Query: 88  MQRAVVIIKG-PGLGRDAALRAIARSGIL--------LRFIRDVTPIPHNGCRAPKKRRV 138
           ++  VV + G    G+        R G          + +I D T   HNGCR P+KRRV
Sbjct: 255 LKSVVVKVNGFTHFGKKKKAIIAFRDGFTNSRSDQNPIVYIEDTTRKAHNGCRLPRKRRV 314


>At1g56500 unknown protein
          Length = 1055

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 28  GVIYVQASFNNTIVTVTDVRGRVISWSSAGSCGFK 62
           G IY+  S+N+ I  +  V  RV++ +  G  GFK
Sbjct: 814 GQIYLTDSYNHKIKKLDPVTKRVVTLAGTGKAGFK 848


>At3g10420 unknown protein
          Length = 684

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 12/38 (31%), Positives = 24/38 (62%), Gaps = 2/38 (5%)

Query: 74  TAAANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIAR 111
           + +A  IR +++ G   ++++I  PG+G+   +R IAR
Sbjct: 200 SGSAEIIRDLIEGG--GSILVIGSPGVGKTTLIREIAR 235


>At1g73170 unknown protein
          Length = 666

 Score = 26.6 bits (57), Expect = 4.4
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 76  AANAIRTVVDQGMQRAVVIIKGPGLGRDAALRAIAR 111
           +AN +R +V  G   ++++I  PG+G+   +R +AR
Sbjct: 186 SANLLRDLVQDG--NSLLLIGPPGVGKTTMIREVAR 219


>At1g27180 disease resistance protein, putative
          Length = 1556

 Score = 25.8 bits (55), Expect = 7.5
 Identities = 17/48 (35%), Positives = 25/48 (51%), Gaps = 1/48 (2%)

Query: 84  VDQGMQRAVVIIKGPGLGRDAALRAIARSGILLRFIRDVTPIPHNGCR 131
           +D   +  V I+KG GL  +AALR + +   LL  + D T   H+  R
Sbjct: 622 MDITKEEVVDILKGCGLNAEAALRVLIQKS-LLTILTDDTLWMHDQIR 668


>At1g29200 hypothetical protein
          Length = 698

 Score = 25.4 bits (54), Expect = 9.8
 Identities = 11/37 (29%), Positives = 18/37 (47%)

Query: 59 CGFKGTRRGTPFAAQTAAANAIRTVVDQGMQRAVVII 95
          CG   T+R  PF +   A+ A +   D+G  + V  +
Sbjct: 18 CGSFPTKRKIPFTSHAVASAARKLEADEGYDKKVATV 54


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.323    0.138    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,851,428
Number of Sequences: 26719
Number of extensions: 99561
Number of successful extensions: 204
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 192
Number of HSP's gapped (non-prelim): 10
length of query: 138
length of database: 11,318,596
effective HSP length: 89
effective length of query: 49
effective length of database: 8,940,605
effective search space: 438089645
effective search space used: 438089645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)