BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139709.19 + phase: 0 
         (353 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

psbA -chloroplast genome- PSII 32 KDa protein                         714  0.0
psbD -chloroplast genome- PSII D2 protein                             161  4e-40
At3g23020 hypothetical protein                                         34  0.11
At4g33150 lysine-ketoglutarate reductase/saccharopine dehydrogen...    32  0.69

>psbA -chloroplast genome- PSII 32 KDa protein
          Length = 353

 Score =  714 bits (1842), Expect = 0.0
 Identities = 349/353 (98%), Positives = 351/353 (98%)

Query: 1   MTAILERRDSENLWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60
           MTAILERR+SE+LW RFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI
Sbjct: 1   MTAILERRESESLWGRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDI 60

Query: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120
           DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL
Sbjct: 61  DGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFL 120

Query: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180
           LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF
Sbjct: 121 LGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTF 180

Query: 181 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240
           NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG
Sbjct: 181 NFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFG 240

Query: 241 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300
           QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF
Sbjct: 241 QEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGF 300

Query: 301 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSING 353
           NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPS NG
Sbjct: 301 NFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVEAPSTNG 353


>psbD -chloroplast genome- PSII D2 protein
          Length = 353

 Score =  161 bits (408), Expect = 4e-40
 Identities = 89/298 (29%), Positives = 160/298 (52%), Gaps = 11/298 (3%)

Query: 8   RDSENLWSRFCNWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPV 67
           +D ++L+    +W+   +  +++GW G+L+ P    A   +             G+    
Sbjct: 10  KDEKDLFDIMDDWLRR-DRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGL---- 64

Query: 68  SGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDE---WLYNGGPYELIVLHFLLGVA 124
           + S L G N ++ A+   + ++      +W   +  +   W   GG +  + LH    + 
Sbjct: 65  ASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWAFVALHGAFALI 124

Query: 125 CYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMI 184
            +M R++EL+  + +RP+ A+A+S P+A   +VFLIYP+GQ  +      G++  F F++
Sbjct: 125 GFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFIL 184

Query: 185 VFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEE 244
            FQ  HN  ++PFHM+GVAGV G +L  A+HG+ V ++L  E  +  +    +   Q EE
Sbjct: 185 FFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEE 243

Query: 245 TYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302
           TY++V A+ ++ ++     +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 244 TYSMVTANRFWSQIF--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 299


>At3g23020 hypothetical protein
          Length = 842

 Score = 34.3 bits (77), Expect = 0.11
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 9/54 (16%)

Query: 97  WE-AASVDEWLYNGGPYELIVLHF-----LLGVAC---YMGREWELSFRLGMRP 141
           WE A  + EW  + G YEL V+H+     +LG AC   Y+   W+   R G++P
Sbjct: 167 WERAVEIFEWFKSKGCYELNVIHYNIMLRILGKACKWRYVQSLWDEMIRKGIKP 220


>At4g33150 lysine-ketoglutarate reductase/saccharopine dehydrogenase
           (LKR/SDH)
          Length = 1064

 Score = 31.6 bits (70), Expect = 0.69
 Identities = 30/107 (28%), Positives = 47/107 (43%), Gaps = 21/107 (19%)

Query: 112 YELIVLHF---LLGVACYMGREWELSFRLGM-RPWIAVAYSAPVAAATAVFL-------- 159
           YELIV      LL    Y GR   + F  G+ + ++++ YS P  +  A ++        
Sbjct: 133 YELIVGDHGKRLLAFGKYAGRAGLVDFLHGLGQRYLSLGYSTPFLSLGASYMYSSLAAAK 192

Query: 160 --IYPIGQGSFSDGMPLGI-------SGTFNFMIVFQAEHNILMHPF 197
             +  +G+   S G+PLGI       +GT N  +  Q    +L H F
Sbjct: 193 AAVISVGEEIASQGLPLGICPLVFVFTGTGNVSLGAQEIFKLLPHTF 239


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.324    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,917,246
Number of Sequences: 26719
Number of extensions: 331442
Number of successful extensions: 858
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 854
Number of HSP's gapped (non-prelim): 4
length of query: 353
length of database: 11,318,596
effective HSP length: 100
effective length of query: 253
effective length of database: 8,646,696
effective search space: 2187614088
effective search space used: 2187614088
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 60 (27.7 bits)