BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.7 + phase: 1 /pseudo
(478 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g73970 unknown protein 169 3e-42
At1g23900 gamma-adaptin, putative 31 1.3
At3g51420 mucin-like protein 30 2.9
At4g09170 hypothetical protein 30 3.8
At1g65550 hypothetical protein 29 5.0
At1g32990 unknown protein 29 6.5
At1g68580 unknown protein 28 8.5
>At1g73970 unknown protein
Length = 699
Score = 169 bits (428), Expect = 3e-42
Identities = 109/291 (37%), Positives = 158/291 (53%), Gaps = 43/291 (14%)
Query: 50 ESFKENYAPFVVFMSGIGVLRVTDRYASSTGMKVDVLTRMRTSAIVRVEALVSDLVSRTL 109
E+ KE YA F VFM+ GV+R + SS +++ +++R SA R+E + LVS
Sbjct: 264 ETSKEKYAVFAVFMAAAGVVRASTAGFSSGAQSLEI-SKLRNSAEKRIEFVAQILVSNG- 321
Query: 110 RFRNLGNDLQDRVLLQCVTLGMTRTISFSSHSSLFVCLGLSLLTRILPLPRLYES---VF 166
L ++ LL+C + + R S SS + L +CL +LLT++ PL ++YES F
Sbjct: 322 NVVTLPTTQREGPLLKCFAIALARCGSVSSSAPLLLCLTSALLTQVFPLGQIYESFCNAF 381
Query: 167 ELSPSSGGLKVNEIKEHPDNILFKEAGAVTGIFCNLYVLADEENKNIVENLIWEYYRDIY 226
P G ++ ++EH ++LFKE+GA++G FCN Y A EENK IVEN+IW++ +++Y
Sbjct: 382 GKEPI--GPRLIWVREHLSDVLFKESGAISGAFCNQYSSASEENKYIVENMIWDFCQNLY 439
Query: 227 FGHRKVVMDLKGKEDELLTNFEKTAESAFLMVVVFALSVTKHKLSSTFAQEIQTEISLKI 286
HR++ M L G ED LL + EK AES+FLMVVVFAL+VTK L ++E + E
Sbjct: 440 LQHRQIAMLLCGIEDTLLGDIEKIAESSFLMVVVFALAVTKQWLKPIVSKERKME----- 494
Query: 287 LVSLSCVEYFRHVRLPEYMETIRKVTAIVKKNENACTFFVNSIPSYGDLTN 337
N+ C FV SIP+Y LTN
Sbjct: 495 -------------------------------NDAPCVSFVESIPAYDSLTN 514
Score = 56.6 bits (135), Expect = 3e-08
Identities = 33/77 (42%), Positives = 46/77 (58%), Gaps = 6/77 (7%)
Query: 405 AFISMGKESEKIDSLIEGEAR---FLSLSIIILPNTL---GMASGVVGMVRHLPAGSPTT 458
AF+S KESE+ + E ++ S+ + P G+ASGV +V+HLPAGSP
Sbjct: 517 AFLSSAKESEEDERTQFKEQLVFYYMQRSLEVYPEITPFEGLASGVATLVQHLPAGSPAI 576
Query: 459 FYCIHSLVEKANQLCSE 475
FY +HSLVEKA+ +E
Sbjct: 577 FYSVHSLVEKASTFSTE 593
>At1g23900 gamma-adaptin, putative
Length = 876
Score = 31.2 bits (69), Expect = 1.3
Identities = 22/98 (22%), Positives = 48/98 (48%), Gaps = 1/98 (1%)
Query: 63 MSGIGVLRVTDRYASSTGMKVDVLTRMRTSAIVRVEALVSDLVSRTLRFRNLGNDLQDRV 122
M+ + +L+++ R+ S + D++ + + S ++ ++ + S R +N+ + L DR+
Sbjct: 531 MALVALLKLSSRFPSISERIKDIIVKQKGSLLLEMQQRAIEYNSIVDRHKNIRSSLVDRM 590
Query: 123 -LLQCVTLGMTRTISFSSHSSLFVCLGLSLLTRILPLP 159
+L T + R SF + S +SL + LP
Sbjct: 591 PVLDEATFNVRRAGSFPASVSTMAKPSVSLQNGVEKLP 628
>At3g51420 mucin-like protein
Length = 370
Score = 30.0 bits (66), Expect = 2.9
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 20/146 (13%)
Query: 168 LSPSSGGLKVNEIKEHPDNILFKEAGAVTGIFCNLYVLADEENKNIVENLIWEYYRDIYF 227
LS S GG K + + D + FK AVT + D +K +++Y+ I+
Sbjct: 136 LSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASSK-------YDFYQFIF- 187
Query: 228 GHRKVVMDLKGKEDELLTNFEKT--AESAFLMVVVFA--LSVTKHKLSSTFAQEIQTEIS 283
L+GK + +F+ T A L + FA +S++ + F + I S
Sbjct: 188 ------DFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCETIMRRCS 241
Query: 284 LKILVSLSCVEYFRHVRLPEYMETIR 309
K +S VE F LP Y + IR
Sbjct: 242 -KYYISEERVEVFIQ-GLPGYPDNIR 265
>At4g09170 hypothetical protein
Length = 133
Score = 29.6 bits (65), Expect = 3.8
Identities = 32/124 (25%), Positives = 50/124 (39%), Gaps = 13/124 (10%)
Query: 120 DRVLLQCVTLGMTR--TISFSSHSSLFVCLGLSLLTRILPLPRLYESVFELSPSSGGLKV 177
D V+L C + TR I F S +CL + LL + RL + + PSS KV
Sbjct: 11 DDVMLTCASCFSTRWSRIIFLILCSPLLCLSIPLLCAVEIFSRLLSRIVKPPPSSAVSKV 70
Query: 178 NEIKEHPDNILFKEAGAVTGIFCNLYVLADEENKNIVENLIWEYYRDIYFGHRKVVMDLK 237
+ + DN+ ++ G+ EE++N L+ Y D + + D
Sbjct: 71 --LVDDEDNLRLRQCEEGFGM--------KEEDENEESGLLHRYL-DNQLSLARTIFDDD 119
Query: 238 GKED 241
G D
Sbjct: 120 GDRD 123
>At1g65550 hypothetical protein
Length = 515
Score = 29.3 bits (64), Expect = 5.0
Identities = 28/109 (25%), Positives = 44/109 (39%), Gaps = 13/109 (11%)
Query: 50 ESFKENYAPFVVFMSGIGVLRVTDRYASSTGMKVDVLTR--MRTSAIVRVEALVSDLVSR 107
+SF A FV G+ + RY S+T + V++R V + ++ +
Sbjct: 298 DSFAMMAASFVTLFESTGLFYASARYGSATPIPPSVVSRGTCWLGVGVLLNGMLGGITGI 357
Query: 108 TLRFRNLGNDLQDRVLLQCVTLGMTRTISFSS----HSSLFVCLGLSLL 152
T N+G LL +G R I S+ S+F +GLS L
Sbjct: 358 TTSTENVG-------LLAMTKIGSRRVIQISAAFMIFFSIFASVGLSYL 399
>At1g32990 unknown protein
Length = 222
Score = 28.9 bits (63), Expect = 6.5
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
Query: 390 HPNGKVARASHSVFT--AFISMGKESEKIDSLIEGEARFLSLSIIILPNTLGMASGVVGM 447
HPN K++ + + + A +S+ +K L+ RFL++ + P G A VVG+
Sbjct: 18 HPNSKLSHSLSAKLSSKANVSVQFLGKKQSPLLSSTPRFLTVIAMAPPKPGGKAKKVVGV 77
Query: 448 VR-HLPAGSPT 457
++ L AG T
Sbjct: 78 IKLALEAGKAT 88
>At1g68580 unknown protein
Length = 648
Score = 28.5 bits (62), Expect = 8.5
Identities = 37/133 (27%), Positives = 55/133 (40%), Gaps = 32/133 (24%)
Query: 202 LYVLADEENKNIVENLIWEYYRDIYFGHRKVVMDLKGKEDELLTNFEKTAESAFLMVVVF 261
+YVLA E++K +V Y D+Y D KGK+ ++ F KT E V
Sbjct: 157 VYVLA-EQHKRLVA-----YIEDLY-------EDSKGKKMVVVRWFHKTEE------VGS 197
Query: 262 ALSVTKHKLSSTFAQEIQTEISLKILVSLSCVEYFRHVRLPEYMETIRKVTAIVKKNENA 321
LS + F+ Q +S+ C++Y V P++ E KV V+
Sbjct: 198 VLSDDDNDREIFFSLNRQD-------ISIECIDYLATVLSPQHYEKFLKVPMHVQ----T 246
Query: 322 CTFFVNSIPSYGD 334
FF + YGD
Sbjct: 247 VAFFCQKL--YGD 257
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,179,017
Number of Sequences: 26719
Number of extensions: 416324
Number of successful extensions: 1213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 9
length of query: 478
length of database: 11,318,596
effective HSP length: 103
effective length of query: 375
effective length of database: 8,566,539
effective search space: 3212452125
effective search space used: 3212452125
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (28.5 bits)
Medicago: description of AC139344.7