BLASTP 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC139344.2 - phase: 0 
         (1591 letters)

Database: ara_mips 
           26,719 sequences; 11,318,596 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

At3g61330 copia-type polyprotein                                      640  0.0
At1g48710 hypothetical protein                                        634  0.0
At3g60170 putative protein                                            593  e-169
At3g59720 copia-type reverse transcriptase-like protein               588  e-168
At2g15650 putative retroelement pol polyprotein                       585  e-167
At3g25450 hypothetical protein                                        567  e-161
At1g32590 hypothetical protein, 5' partial                            546  e-155
At2g20460 putative retroelement pol polyprotein                       515  e-146
At2g05390 putative retroelement pol polyprotein                       511  e-144
At1g31210 putative reverse transcriptase                              497  e-140
At2g16000 putative retroelement pol polyprotein                       492  e-139
At1g70010 hypothetical protein                                        473  e-133
At2g13930 putative retroelement pol polyprotein                       452  e-127
At1g37110                                                             449  e-126
At1g26990 polyprotein, putative                                       447  e-125
At3g45520 copia-like polyprotein                                      445  e-125
At2g07550 putative retroelement pol polyprotein                       441  e-123
At5g35820 copia-like retrotransposable element                        436  e-122
At2g16670 putative retroelement pol polyprotein                       429  e-120
At2g21460 putative retroelement pol polyprotein                       425  e-118

>At3g61330 copia-type polyprotein
          Length = 1352

 Score =  640 bits (1650), Expect = 0.0
 Identities = 355/977 (36%), Positives = 532/977 (54%), Gaps = 58/977 (5%)

Query: 617  ESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGC 676
            E K P  K  + KA    EK             ++ + +        +++   WYLDSG 
Sbjct: 293  ECKAPSNKKFEEKAHYVEEKI-----------QEEDMLLMASYKKDEQKENHKWYLDSGA 341

Query: 677  SRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLK 731
            S HM G K++F  L     G V  G     ++ G G I           I+NV+ +  +K
Sbjct: 342  SNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMK 401

Query: 732  HNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF-SDLADQKVVCL 790
             N+LS+ Q  +  YD+     N ++ +++   IT        ++ +N  +D+A    +C 
Sbjct: 402  TNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCY 461

Query: 791  LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS 850
                ++ W+WH R GH N+  +  +S+ ++V+GLP I+ H + +C  C  GK  K SF  
Sbjct: 462  ---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPK 517

Query: 851  KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 910
            +      +PLEL+H D+ GP+   SL  S Y L+ +DD+SR TWV F+K K    E+F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 911  FCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRT 970
            F   ++ E  L I  +RSD GGEF ++ F  +CE +GI  + + PR+PQQNGVVERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVVERKNRT 637

Query: 971  LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1030
            + EMAR+M+    L K  WAEAV  + Y+ NR   + +  KT  E + GR+P +S+   F
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVF 697

Query: 1031 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS 1090
            G   +     +   K D K+++ IF+GY   SK Y++YN +T+    S ++ FD+     
Sbjct: 698  GSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757

Query: 1091 KTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNE 1150
              S + + N      ED  E   P+  E  ++  ++P    T      S +E +P  ++ 
Sbjct: 758  WNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814

Query: 1151 SASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKT 1210
                +  +N + +                                  +L  L +  EP  
Sbjct: 815  QELYEVTENQENL----------------------------------TLFCLFAECEPMD 840

Query: 1211 VEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKA 1270
             ++A+    W  AM EE+   Q+ND W+L   P     I  KWV++ K N +GEV R KA
Sbjct: 841  FQKAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900

Query: 1271 RLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEV 1330
            RLVA+GYSQ+ GI+Y E FAPVARLET+RL++S A  +   ++QMDVKS FLNG +EEEV
Sbjct: 901  RLVAKGYSQRVGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 1331 YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRT 1390
            Y++QP G+      D V +LKK LYGLKQAPRAW  R+  +  + DF +   +  L+ + 
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKI 1020

Query: 1391 LKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVY 1450
             K+DILI  +YVDD+IF   N S+ +EF K M  EFEM+ +G + ++LGI++ Q   G++
Sbjct: 1021 QKEDILIACLYVDDLIFTGNNPSIFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1451 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1510
            + Q  Y KE+LKKFK++D   + TPM     LSK++ G  VD   ++ ++GSL YLT +R
Sbjct: 1081 ITQEGYAKEVLKKFKIDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1140

Query: 1511 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAG 1570
            PDIL++V + +R+   P  +H  A KRI RY+KGT N GL Y  + DYKL+G+ D+D+ G
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 1571 DRIERKSTSGNCQFLGE 1587
            D  +RKSTSG   ++G+
Sbjct: 1201 DVDDRKSTSGFVFYIGD 1217



 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 67/299 (22%), Positives = 133/299 (44%), Gaps = 16/299 (5%)

Query: 44  WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
           W   M + +   D  +W+I+E G   ++ + EG+    +      +   K+  K   +I 
Sbjct: 21  WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74

Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEM 163
             +    + K+ + ++AK  +  L  +++G+  VK+ +   L  ++E  +MK+ E + + 
Sbjct: 75  QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134

Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
           +SR  T+ + L+   +       + K+LRSL  ++   VT IEE KDL  +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194

Query: 224 KVHEMSLNEHETSKKSKSIA---LPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
           + +E      E  KK + IA   L  +    ++ ++Y+     +    G           
Sbjct: 195 QAYE------EKKKKKEDIAEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKS 339
              +          +   K G  K+   +    C+NC K GH+ ++C     +KF+ K+
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFEEKA 306


>At1g48710 hypothetical protein
          Length = 1352

 Score =  634 bits (1636), Expect = 0.0
 Identities = 353/977 (36%), Positives = 529/977 (54%), Gaps = 58/977 (5%)

Query: 617  ESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGC 676
            E K P  K  + KA    EK             ++ + +        +E+   WYLDSG 
Sbjct: 293  ECKAPSNKKFEEKANYVEEKI-----------QEEDMLLMASYKKDEQEENHKWYLDSGA 341

Query: 677  SRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLK 731
            S HM G K++F  L     G V  G     ++ G G I           I+NV+ +  +K
Sbjct: 342  SNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMK 401

Query: 732  HNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF-SDLADQKVVCL 790
             N+LS+ Q  +  YD+     N ++ +++   IT        ++ +N  +D+A    +C 
Sbjct: 402  TNILSLGQLLEKGYDIRLKDNNLSIRDQESNLITKVPMSKNRMFVLNIRNDIAQCLKMCY 461

Query: 791  LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS 850
                ++ W+WH R GH N+  +  +S+ ++V+GLP I+ H + +C  C  GK  K SF  
Sbjct: 462  ---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLLGKQFKMSFPK 517

Query: 851  KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 910
            +      + LEL+H D+ GP+   SL  S Y L+ +DD+SR TWV F+K K    E+F  
Sbjct: 518  ESSSRAQKSLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 911  FCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRT 970
            F   ++ E  L I  +RSD GGEF ++ F  +CE +GI  + + PR+PQQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDRGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637

Query: 971  LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1030
            + EMAR+M+    L K  WAEAV  + Y+ NR   + +  KT  E + GR+  +S+   F
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKSGVSHLRVF 697

Query: 1031 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS 1090
            G   +     +   K D K+++ IF+GY   SK Y++YN +T+    S ++ FD+     
Sbjct: 698  GSIAHAHVPDEKRSKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757

Query: 1091 KTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNE 1150
              S + + N      ED  E   P+  E  ++  ++P    T      S +E +P  ++ 
Sbjct: 758  WNSNEEDYNFFPHFEEDEPE---PTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814

Query: 1151 SASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKT 1210
                +  +N + +                                  +L  L +  EP  
Sbjct: 815  QELYEVTENQENL----------------------------------TLFCLFAECEPMD 840

Query: 1211 VEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKA 1270
             +EA+    W  AM EE+   Q+ND W+L   P     I  KWV++ K N +GEV R KA
Sbjct: 841  FQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKTIGVKWVYKAKKNSKGEVERYKA 900

Query: 1271 RLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEV 1330
            RLVA+GY Q+ GI+Y E FAPVARLET+RL++S A  +   ++QMDVKS FLNG +EEEV
Sbjct: 901  RLVAKGYIQRAGIDYDEVFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 1331 YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRT 1390
            Y++QP G+      D V +LKK+LYGLKQAPRAW  R+  +  + DF +   +  L+ + 
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKALYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKI 1020

Query: 1391 LKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVY 1450
             K+DILI  +YVDD+IF   N S+ +EF K M  EFEM+ +G + ++LGI++ Q   G++
Sbjct: 1021 QKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1451 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1510
            + Q  Y KE+LKKFK++D   + TPM     LSK++ G  VD   ++ ++GSL YLT +R
Sbjct: 1081 ITQEGYAKEVLKKFKMDDSNPVCTPMECGIKLSKKEEGEGVDPTTFKSLVGSLRYLTCTR 1140

Query: 1511 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAG 1570
            PDIL++V + +R+   P  +H  A KRI RY+KGT N GL Y  + DYKL+G+ D+D+ G
Sbjct: 1141 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLVGYSDSDWGG 1200

Query: 1571 DRIERKSTSGNCQFLGE 1587
            D  +RKSTSG   ++G+
Sbjct: 1201 DVDDRKSTSGFVFYIGD 1217



 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 71/327 (21%), Positives = 147/327 (44%), Gaps = 20/327 (6%)

Query: 44  WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
           W   M + +   D  +W+I+E G   ++ + EG+    +      +   K+  K   +I 
Sbjct: 21  WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74

Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEM 163
             +    + K+ + ++AK  +  L  +++G+  VK+ +   L  ++E  +MK+ E + + 
Sbjct: 75  QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134

Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
           +SR  T+ + L+   +       + K+LRSL  ++   VT IEE KDL  +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194

Query: 224 KVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
           + +E      E  KK + I    L  +    ++ ++Y+     +    G           
Sbjct: 195 QAYE------EKKKKKEDIIEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSK 340
              +          +   K G  K+   +    C+NC K GH+ ++C     +KF+   +
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFE---E 304

Query: 341 KSSFNSSKFRKQIKKSLMATWEDLDSE 367
           K+++   K +++    LMA+++  + E
Sbjct: 305 KANYVEEKIQEE-DMLLMASYKKDEQE 330


>At3g60170 putative protein
          Length = 1339

 Score =  593 bits (1530), Expect = e-169
 Identities = 336/944 (35%), Positives = 516/944 (54%), Gaps = 29/944 (3%)

Query: 647  LNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTG 706
            L +++ L +   V      +   W+LDSGCS HMTG K  F  L       VK G +   
Sbjct: 277  LEEEEELLLMAYVEQNQANRDEVWFLDSGCSNHMTGSKEWFSELEEGFNRTVKLGNDTRM 336

Query: 707  KIIGTGTI-----GNSSISINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDD 761
             ++G G++     G + + I  V+ V  L++NLLS+ Q  +    +      C + +   
Sbjct: 337  SVVGKGSVKVKVNGVTQV-IPEVYYVPELRNNLLSLGQLQERGLAILIRDGTCKVYHPSK 395

Query: 762  KSITFKGKRVENVYKINFSDLADQKVVCLLS---MNDKKWVWHKRLGHANWRLISKISKL 818
             +I         ++ +  +    +  +CL +   M+ +  +WH R GH N   +  ++  
Sbjct: 396  GAIMETNMSGNRMFFL-LASKPQKNSLCLQTEEVMDKENHLWHCRFGHLNQEGLKLLAHK 454

Query: 819  QLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYG 878
            ++V GLP +    + +C  C  GK  + S   K    +S  L+L+H D+ GP+   S  G
Sbjct: 455  KMVIGLPILKATKE-ICAICLTGKQHRESMSKKTSWKSSTQLQLVHSDICGPITPISHSG 513

Query: 879  SKYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEP 938
             +Y L  +DD++R TWV F+  K  A   F  F   ++ E    +  +R+D GGEF +  
Sbjct: 514  KRYILSFIDDFTRKTWVYFLHEKSEAFATFKIFKASVEKEIGAFLTCLRTDRGGEFTSNE 573

Query: 939  FELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCY 998
            F  FC  HGI  + ++  TPQQNGV ERKNRT+    R+M+ E  + K FW+EA   S +
Sbjct: 574  FGEFCRSHGISRQLTAAFTPQQNGVAERKNRTIMNAVRSMLSERQVPKMFWSEATKWSVH 633

Query: 999  IQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGY 1058
            IQNR     +   T  E + GR+P + YF  FGC  Y+        K D K+++ +FLG 
Sbjct: 634  IQNRSPTAAVEGMTPEEAWSGRKPVVEYFRVFGCIGYVHIPDQKRSKLDDKSKKCVFLGV 693

Query: 1059 SERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSE 1118
            SE SKA+R+Y+   + +  S  V FD+ +         E+   T +  D        D E
Sbjct: 694  SEESKAWRLYDPVMKKIVISKDVVFDEDKSWDWDQADVEAKEVTLECGD-------EDDE 746

Query: 1119 KYTKVESSPEAEITPEAESNSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEEL 1178
            K ++V             S++   SSPI+   S +          +  K   +   P  +
Sbjct: 747  KNSEVVEPIAVASPNHVGSDNNVSSSPILAPSSPAPS-------PVAAKVTRERRPPGWM 799

Query: 1179 IIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWD 1238
                         +      L+ +++  +P   ++A+ D  W  AM+ E+    +N+ W+
Sbjct: 800  ADYETGEGEEIEENL--SVMLLMMMTEADPIQFDDAVKDKIWREAMEHEIESIVKNNTWE 857

Query: 1239 LVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETI 1298
            L   P     I  KWV++ KLNE GEV + KARLVA+GY+Q  GI+YTE FAPVARL+T+
Sbjct: 858  LTTLPKGFTPIGVKWVYKTKLNEDGEVDKYKARLVAKGYAQCYGIDYTEVFAPVARLDTV 917

Query: 1299 RLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLK 1358
            R +L+ +      ++Q+DVKS FL+G ++EEVYV+QP GF      + VYKL+K+LYGLK
Sbjct: 918  RTILAISSQFNWEIFQLDVKSAFLHGELKEEVYVRQPEGFIREGEEEKVYKLRKALYGLK 977

Query: 1359 QAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEF 1418
            QAPRAWY R+  + +K +FER   + TLF +T   +ILIV +YVDD+IF  ++ ++C EF
Sbjct: 978  QAPRAWYSRIEAYFLKEEFERCPSEHTLFTKTRVGNILIVSLYVDDLIFTGSDKAMCDEF 1037

Query: 1419 SKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP 1478
             K M  EFEMS +G++K FLGI++ QS  G+++ Q +Y +E+L +F +++   +  P+ P
Sbjct: 1038 KKSMMLEFEMSDLGKMKHFLGIEVKQSDGGIFICQRRYAREVLARFGMDESNAVKNPIVP 1097

Query: 1479 TCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRI 1538
               L+K++ G  VD+ +++ ++GSL+YLT +RPD+++ VCL +RF S+PR SH  A KRI
Sbjct: 1098 GTKLTKDENGEKVDETMFKQLVGSLMYLTVTRPDLMYGVCLISRFMSNPRMSHWLAAKRI 1157

Query: 1539 FRYLKGTTNLGLLY--RKSLDYKLIGFCDADYAGDRIERKSTSG 1580
             RYLKGT  LG+ Y  RK+   KL+ F D+DYAGD  +R+STSG
Sbjct: 1158 LRYLKGTVELGIFYRRRKNRSLKLMAFTDSDYAGDLNDRRSTSG 1201



 Score =  107 bits (268), Expect = 4e-23
 Identities = 77/301 (25%), Positives = 136/301 (44%), Gaps = 43/301 (14%)

Query: 32  PKFNGDPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKL 91
           P+F+G    + +W   M +F+     ELW ++E+G+  + +     +  +R    A ++ 
Sbjct: 13  PRFDG---YYDFWSMTMENFLRS--RELWRLVEEGIPAIVVGTTPVSEAQR---SAVEEA 64

Query: 92  YKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYEL 151
             K  K++  +  +I R     + DKST+KA++ S+   ++GS  VK A+   L  ++EL
Sbjct: 65  KLKDLKVKNFLFQAIDREILETILDKSTSKAIWESMKKKYQGSTKVKRAQLQALRKEFEL 124

Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
             MK+ E I+    R  T+V+ ++   +    S  VSKILRSL  ++   V +IEE+ DL
Sbjct: 125 LAMKEGEKIDTFLGRTLTVVNKMKTNGEVMEQSTIVSKILRSLTPKFNYVVCSIEESNDL 184

Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
           +TLS+++L  SL VHE  LN H   +++  +    +    +    ++ S           
Sbjct: 185 STLSIDELHGSLLVHEQRLNGHVQEEQALKVTHEERPSQGRGRGVFRGSRGR-------- 236

Query: 272 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQ 331
                                       RG  ++        C+ C   GHF  +CP+ +
Sbjct: 237 ---------------------------GRGRGRSGTNRAIVECYKCHNLGHFQYECPEWE 269

Query: 332 K 332
           K
Sbjct: 270 K 270


>At3g59720 copia-type reverse transcriptase-like protein
          Length = 1272

 Score =  588 bits (1516), Expect = e-168
 Identities = 336/951 (35%), Positives = 497/951 (51%), Gaps = 84/951 (8%)

Query: 617  ESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGC 676
            E K P  K  K KA    EK             ++ + +        +E+   WYLDSG 
Sbjct: 293  ECKAPSNKKFKEKANYVEEKI-----------QEEDMLLMASYKKDEQEENHKWYLDSGA 341

Query: 677  SRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLK 731
            S HM G K++F  L     G V  G     ++ G G I           I+NV+ +  +K
Sbjct: 342  SNHMCGRKSMFAELDESVRGNVALGDESKMEVKGKGNILIRLKNGDHQFISNVYYIPSMK 401

Query: 732  HNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF-SDLADQKVVCL 790
             N+LS+ Q  +  YD+     N ++ +K+   IT        ++ +N  +D+A    +C 
Sbjct: 402  TNILSLGQLLEKGYDIRLKDNNLSIRDKESNLITKVPMSKNRMFVLNIRNDIAQCLKMCY 461

Query: 791  LSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKS 850
                ++ W+WH R GH N+  +  +S+ ++V+GLP I+ H + +C  C  G   K SF  
Sbjct: 462  ---KEESWLWHLRFGHLNFGGLELLSRKEMVRGLPCIN-HPNQVCEGCLLGNQFKMSFPK 517

Query: 851  KDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACEVFSS 910
            +      +PLEL+H D+ GP+   SL  S Y L+ +DD+SR TWV F+K K    E+F  
Sbjct: 518  ESSSRAQKPLELIHTDVCGPIKPKSLGKSNYFLLFIDDFSRKTWVYFLKEKSEVFEIFKK 577

Query: 911  FCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRT 970
            F   ++ E  L I  +RSD GGEF ++ F  +CE +GI  + + PR+PQQNGV ERKNRT
Sbjct: 578  FKAHVEKESGLVIKTMRSDSGGEFTSKEFLKYCEDNGIRRQLTVPRSPQQNGVAERKNRT 637

Query: 971  LQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQF 1030
            + EMAR+M+    L K  WAEAV  + Y+ NR   + +  KT  E + GR+P +S+   F
Sbjct: 638  ILEMARSMLKSKRLPKELWAEAVACAVYLLNRSPTKSVSGKTPQEAWSGRKPGVSHLRVF 697

Query: 1031 GCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGS 1090
            G   +     +   K D K+++ IF+GY   SK Y++YN +T+    S ++ FD+     
Sbjct: 698  GSIAHAHVPDEKRNKLDDKSEKYIFIGYDNNSKGYKLYNPDTKKTIISRNIVFDEEGEWD 757

Query: 1091 KTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSPIVQNE 1150
              S + + N      ED  E   P+  E  ++  ++P    T      S +E +P  ++ 
Sbjct: 758  WNSNEEDYNFFPHFEEDKPE---PTREEPPSEEPTTPPTSPTSSQIEESSSERTPRFRSI 814

Query: 1151 SASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKT 1210
                +  +N + +                                  +L  L +  EP  
Sbjct: 815  QELYEVTENQENL----------------------------------TLFCLFAECEPMD 840

Query: 1211 VEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKA 1270
             +EA+    W  AM EE+   Q+ND W+L   P     I  KWV++ K N +GEV R KA
Sbjct: 841  FQEAIEKKTWRNAMDEEIKSIQKNDTWELTSLPNGHKAIGVKWVYKAKKNSKGEVERYKA 900

Query: 1271 RLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEV 1330
            RLVA+GYSQ+ GI+Y E FAPVARLET+RL++S A  +   ++QMDVKS FLNG +EEEV
Sbjct: 901  RLVAKGYSQRAGIDYDEIFAPVARLETVRLIISLAAQNKWKIHQMDVKSAFLNGDLEEEV 960

Query: 1331 YVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRT 1390
            Y++QP G+      D V +LKK LYGLKQAPRAW  R+  +  + DF +   +  L+ + 
Sbjct: 961  YIEQPQGYIVKGEEDKVLRLKKVLYGLKQAPRAWNTRIDKYFKEKDFIKCPYEHALYIKI 1020

Query: 1391 LKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVY 1450
             K+DILI  +YVDD+IF   N S+ +EF K M  EFEM+ +G + ++LGI++ Q   G++
Sbjct: 1021 QKEDILIACLYVDDLIFTGNNPSMFEEFKKEMTKEFEMTDIGLMSYYLGIEVKQEDNGIF 1080

Query: 1451 VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASR 1510
            + Q  Y KE+LKKFK++D                              ++GSL YLT +R
Sbjct: 1081 ITQEGYAKEVLKKFKMDDSN--------------------------PSLVGSLRYLTCTR 1114

Query: 1511 PDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLI 1561
            PDIL++V + +R+   P  +H  A KRI RY+KGT N GL Y  + DYKL+
Sbjct: 1115 PDILYAVGVVSRYMEHPTTTHFKAAKRILRYIKGTVNFGLHYSTTSDYKLV 1165



 Score = 83.2 bits (204), Expect = 1e-15
 Identities = 72/327 (22%), Positives = 147/327 (44%), Gaps = 20/327 (6%)

Query: 44  WKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIV 103
           W   M + +   D  +W+I+E G   ++ + EG+    +      +   K+  K   +I 
Sbjct: 21  WSLRMKAILGAHD--VWEIVEKGF--IEPENEGSL--SQTQKDGLRDSRKRDKKALCLIY 74

Query: 104 ASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEM 163
             +    + K+ + ++AK  +  L  +++G+  VK+ +   L  ++E  +MK+ E + + 
Sbjct: 75  QGLDEDTFEKVVEATSAKEAWEKLRTSYKGADQVKKVRLQTLRGEFEALQMKEGELVSDY 134

Query: 164 YSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSVEDLVSSL 223
           +SR  T+ + L+   +       + K+LRSL  ++   VT IEE KDL  +++E L+ SL
Sbjct: 135 FSRVLTVTNNLKRNGEKLDDVRIMEKVLRSLDLKFEHIVTVIEETKDLEAMTIEQLLGSL 194

Query: 224 KVHEMSLNEHETSKKSKSI---ALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMA 280
           + +E      E  KK + I    L  +    ++ ++Y+     +    G           
Sbjct: 195 QAYE------EKKKKKEDIVEQVLNMQITKEENGQSYQRRGGGQVRGRGRGGYGNGRGWR 248

Query: 281 MLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEKFKGKSK 340
              +          +   K G  K+   +    C+NC K GH+ ++C     +KFK   +
Sbjct: 249 PHEDNTNQRGENSSRGRGK-GHPKSRYDKSSVKCYNCGKFGHYASECKAPSNKKFK---E 304

Query: 341 KSSFNSSKFRKQIKKSLMATWEDLDSE 367
           K+++   K +++    LMA+++  + E
Sbjct: 305 KANYVEEKIQEE-DMLLMASYKKDEQE 330


>At2g15650 putative retroelement pol polyprotein
          Length = 1347

 Score =  585 bits (1508), Expect = e-167
 Identities = 335/927 (36%), Positives = 512/927 (55%), Gaps = 45/927 (4%)

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIGNSSIS-------IN 722
            W +DSGC+ HMT E+  F  +       ++    + G I+ T   G+ ++        I 
Sbjct: 326  WLVDSGCTNHMTKEERYFSNINKSIKVPIRV---RNGDIVMTAGKGDITVMTRHGKRIIK 382

Query: 723  NVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDL 782
            NV+LV GL+ NLLS+ Q   + Y V F    C + + + K I    +  +  +KI  S +
Sbjct: 383  NVFLVPGLEKNLLSVPQIISSGYWVRFQDKRCIIQDANGKEI-MNIEMTDKSFKIKLSSV 441

Query: 783  ADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGK 842
             ++ +   +   +    WHKRLGH + + + ++   +LV GLP      +  C AC  GK
Sbjct: 442  EEEAMTANVQTEE---TWHKRLGHVSNKRLQQMQDKELVNGLPRFKVTKET-CKACNLGK 497

Query: 843  IVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 902
              + SF  +    T   LE++H D+ GP+   S+ GS+Y ++ +DDY+   WV F+K K 
Sbjct: 498  QSRKSFPKESQTKTREKLEIVHTDVCGPMQHQSIDGSRYYVLFLDDYTHMCWVYFLKQKS 557

Query: 903  YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 962
                 F  F   ++ +    I  +R          P E+FCE  GI  + + P +PQQNG
Sbjct: 558  ETFATFKKFKALVEKQSNCSIKTLR----------PMEVFCEDEGINRQVTLPYSPQQNG 607

Query: 963  VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEK-TAYELFKGRR 1021
              ERKNR+L EMAR+M+ E +L    WAEAV TS Y+QNR+  + + +  T  E + G +
Sbjct: 608  AAERKNRSLVEMARSMLVEQDLPLKLWAEAVYTSAYLQNRLPSKAIEDDVTPMEKWCGHK 667

Query: 1022 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHV 1081
            PN+S+   FG  CY+       +K DAKA+ GI +GYS ++K YRV+  E + VE S  V
Sbjct: 668  PNVSHLRIFGSICYVHIPDQKRRKLDAKAKCGILIGYSNQTKGYRVFLLEDEKVEVSRDV 727

Query: 1082 KFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEA 1141
             F + +      ++           D  ES    ++       SS +     +  +N E 
Sbjct: 728  VFQEDKKWDWDKQEEVKKTFVMSINDIQESRDQQET-------SSHDLSQIDDHANNGEG 780

Query: 1142 ESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG 1201
            E+S  V ++   ++ ++ ++    PK K+KS   +E++   + +PR       Q      
Sbjct: 781  ETSSHVLSQVNDQEERETSES---PK-KYKSM--KEIL---EKAPRMENDEAAQGIEAC- 830

Query: 1202 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNE 1261
            L++  EP+T +EA  D  W  AM EE+   ++N  W LV KP +KN+I  KW+++ K + 
Sbjct: 831  LVANEEPQTYDEARGDKEWEEAMNEEIKVIEKNRTWKLVDKPEKKNVISVKWIYKIKTDA 890

Query: 1262 QGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVF 1321
             G   ++KARLVA+G+SQ+ GI+Y ETFAPV+R +TIR LL+YA      LYQMDVKS F
Sbjct: 891  SGNHVKHKARLVARGFSQEYGIDYLETFAPVSRYDTIRALLAYAAQMKWRLYQMDVKSAF 950

Query: 1322 LNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1381
            LNG +EEEVYV QPPGF      + V +L K+LYGLKQAPRAWY+R+ ++ I+N F R  
Sbjct: 951  LNGELEEEVYVTQPPGFVIEGKEEKVLRLYKALYGLKQAPRAWYERIDSYFIQNGFARSM 1010

Query: 1382 VDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1441
             D  L+ +   +D+LIV +YVDD+I    N  L   F K M+DEFEM+ +G L +FLG++
Sbjct: 1011 NDAALYSKKKGEDVLIVSLYVDDLIITGNNTHLINTFKKNMKDEFEMTDLGLLNYFLGME 1070

Query: 1442 INQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLS--KEDTGTVVDQKLYRGM 1499
            +NQ   G+++ Q KY  +L+ KF +++ K ++TP+ P       + D     D   YR +
Sbjct: 1071 VNQDDSGIFLSQEKYANKLIDKFGMKESKSVSTPLTPQGKRKGVEGDDKEFADPTKYRRI 1130

Query: 1500 IGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYK 1559
            +G LLYL ASRPD++++    +R+ S P   H    KR+ RY+KGT+N G+L+      +
Sbjct: 1131 VGGLLYLCASRPDVMYASSYLSRYMSSPSIQHYQEAKRVLRYVKGTSNFGVLFTSKETPR 1190

Query: 1560 LIGFCDADYAGDRIERKSTSGNCQFLG 1586
            L+G+ D+D+ G   ++KST+G    LG
Sbjct: 1191 LVGYSDSDWGGSLEDKKSTTGYVFTLG 1217



 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 64/298 (21%), Positives = 135/298 (44%), Gaps = 16/298 (5%)

Query: 37  DPEEFSWWKTNMYSFIMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHH 96
           D E++ +W   M +       +LW ++E+GV    +  E      R  T  ++ +     
Sbjct: 13  DGEKYDFWSIKMATIFR--TRKLWSVVEEGVPVEPVQAEETPETARAKTLREEAVTNDTM 70

Query: 97  KIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKD 156
            ++ I+  ++    + +++  S++K  +  L   ++GS  V+  K   L  +YE  +M D
Sbjct: 71  ALQ-ILQTAVTDQIFSRIAAASSSKEAWDVLKDEYQGSPQVRLVKLQSLRREYENLKMYD 129

Query: 157 DESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNTLSV 216
           +++I+    +   L   L    +    +  + KIL SLP+++   V+ +E+ +DL+ L++
Sbjct: 130 NDNIKTFTDKLIVLEIQLTYHGEKKTNTQLIQKILISLPAKFDSIVSVLEQTRDLDALTM 189

Query: 217 EDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQS 276
            +L+  LK  E  +   E S K  +  + SKG+           ES  +  + ++  +Q 
Sbjct: 190 SELLGILKAQEARVTAREESTKEGAFYVRSKGR-----------ESGFKQDNTNNRVNQD 238

Query: 277 VKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKEK 334
            K        ++   ++ +   K   +  +K+ + K C+ C K GH+  +C    KE+
Sbjct: 239 KKWCGFHKSSKH-TEEECREKPKNDDHGKNKRSNIK-CYKCGKIGHYANECRSKNKER 294


>At3g25450 hypothetical protein
          Length = 1343

 Score =  567 bits (1461), Expect = e-161
 Identities = 333/1010 (32%), Positives = 556/1010 (54%), Gaps = 46/1010 (4%)

Query: 594  DPKSQKIKILKRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKV-LNDQKP 652
            D + ++ +++ +      ++I    K+ + ++QK K    + +     +   V LN++  
Sbjct: 220  DLEEEEEEVINKEIKAKSHVIDRLLKLIRLQEQKEKEEDDTHEAESLMMHEVVYLNEKNI 279

Query: 653  LSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTG 712
                 + C+       +WYLD+G S HMTG +A F  L     G+V+FG +    I G G
Sbjct: 280  RPTELESCIN-----NAWYLDNGASNHMTGNRAWFCKLDEMITGKVRFGDDSCINIKGKG 334

Query: 713  TI-----GNSSISINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFK 767
            +I     G     + +V+ +  LK N+LS+ Q  ++  D+   +   TL +++  ++  K
Sbjct: 335  SIPFISKGGERKILFDVYYIPDLKSNILSLGQATESGCDIRMREDYLTLHDREG-NLLIK 393

Query: 768  GKRVEN-VYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPN 826
             +R  N +YK++  ++ + K + L + N+   +WH RLGH ++  I  + K +LV G+ +
Sbjct: 394  AQRSRNRLYKVSL-EVENSKCLQLTTTNEST-IWHARLGHISFETIKAMIKKELVIGISS 451

Query: 827  IDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIV 886
                    CG+C  GK  + SF        ++ LEL+H DL GP++ ++    +Y  V++
Sbjct: 452  SVPQEKETCGSCLFGKQARHSFPKATSYRAAQVLELIHGDLCGPISPSTAAKKRYVFVLI 511

Query: 887  DDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKH 946
            DD+SR+ W   +K K  A   F  F   ++ E    I   R+D GGEF +  F+ FC K 
Sbjct: 512  DDHSRYMWSILLKEKSEAFGKFKEFKALVEQECGAIIKTFRTDRGGEFLSHEFQEFCAKE 571

Query: 947  GILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 1006
            GI    ++P TPQQNGVVER+NRTL  M R+++   N+  + W EAV  S Y+ NR+  R
Sbjct: 572  GINRHLTAPYTPQQNGVVERRNRTLLGMTRSILKHMNMPNYLWGEAVRHSTYLINRVGTR 631

Query: 1007 PMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYR 1066
             +  +T YE+FK ++PN+ +   FGC  Y       LKK D +++  ++LG    SKAYR
Sbjct: 632  SLSNQTPYEVFKHKKPNVEHLRVFGCVSYAKVEVPNLKKLDDRSRMLVYLGTEPGSKAYR 691

Query: 1067 VYNSETQCVEESMHVKFDDREPG--SKTSEQSESNAGT-TDSEDASESDQPSDSEKYTKV 1123
            + +   + +  S  V FD+       ++S +++  +GT T +     ++  ++++  T+ 
Sbjct: 692  LLDPTKRRIFVSRDVVFDENRSWMWQESSSETDKESGTFTITLSEFGNNGVTENDISTEP 751

Query: 1124 ESSPEAEITPEAESN-SEAESSPIVQNESASEDFQDNTQQVIQPKFKHK-----SSHPEE 1177
            E + EAEI  E E+   EAE+    Q++   +  + + +QVI+P +            E 
Sbjct: 752  EETEEAEINGEDENIIEEAETEEHDQSQEEPQPVRRSQRQVIRPNYLKDYVLCAEIEAEH 811

Query: 1178 LIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVW 1237
            L++   D                      EP   +EA     W  A +EE+   ++N  W
Sbjct: 812  LLLAVND----------------------EPWDFKEANKSKEWRDACKEEIQSIEKNRTW 849

Query: 1238 DLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLET 1297
             LV  P     I  KWVF+ K N  G + + KARLVA+GY Q+ G+++ E FAPVAR+ET
Sbjct: 850  SLVDLPVGSKAIGVKWVFKLKHNSDGSINKYKARLVAKGYVQRHGVDFEEVFAPVARIET 909

Query: 1298 IRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGL 1357
            +RL+++ A ++G  ++ +DVK+ FL+G + E+VYV QP GF + +  + VYKL K+LYGL
Sbjct: 910  VRLIIALAASNGWEIHHLDVKTAFLHGELREDVYVSQPEGFTNKESKEKVYKLHKALYGL 969

Query: 1358 KQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKE 1417
            +QAPRAW  +L+  L +  FE+   + +L+R+   ++IL+V +YVDD++   +N  +   
Sbjct: 970  RQAPRAWNTKLNEILKELKFEKCHKEPSLYRKQEGENILVVAVYVDDLLVTGSNLDIILN 1029

Query: 1418 FSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMH 1477
            F K M  +FEMS +G+L ++LGI++ QSK+G+ + Q +Y K++L++  +  C  +NTPM 
Sbjct: 1030 FKKGMVGKFEMSDLGKLTYYLGIEVLQSKDGITLKQERYAKKILEEAGMSKCNTVNTPMI 1089

Query: 1478 PTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKR 1537
             +  LSK      +D+  YR  IG L YL  +RPD+ ++V + +R+  +PRESH  A+K+
Sbjct: 1090 ASLELSKAQDEKRIDETDYRRNIGCLRYLLHTRPDLSYNVGILSRYLQEPRESHGAALKQ 1149

Query: 1538 IFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGE 1587
            I RYL+GTT+ GL ++K  +  LIG+ D+ +  D  + KST G+  +L +
Sbjct: 1150 ILRYLQGTTSHGLYFKKGENAGLIGYSDSSHNVDLDDGKSTGGHIFYLND 1199



 Score = 69.7 bits (169), Expect = 1e-11
 Identities = 54/219 (24%), Positives = 105/219 (47%), Gaps = 19/219 (8%)

Query: 93  KKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELF 152
           +K+   R ++  SIP +  +++  + T+ A++ ++ +   G++ VKEA+   L+ +++  
Sbjct: 58  EKNDMARALLFQSIPESLILQVGKQKTSSAVWEAIKSRNLGAERVKEARLQTLMAEFDKL 117

Query: 153 RMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDL 211
           +MKD E+I++   R   + +    L +    S  V K L+SLP  ++   V A+E+  DL
Sbjct: 118 KMKDSETIDDYVGRISEITTKAAALGEDIEESKIVKKFLKSLPRKKYIHIVAALEQVLDL 177

Query: 212 NTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDS 271
            T + ED+   +K +E  + + + S +        +GK          +E EEE  D   
Sbjct: 178 KTTTFEDIAGRIKTYEDRVWDDDDSHE-------DQGKL--------MTEVEEEVVDDLE 222

Query: 272 DEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKED 310
           +E++ V    +  K   + R  K     R   +  K+ED
Sbjct: 223 EEEEEVINKEIKAKSHVIDRLLKLI---RLQEQKEKEED 258


>At1g32590 hypothetical protein, 5' partial
          Length = 1263

 Score =  546 bits (1408), Expect = e-155
 Identities = 311/937 (33%), Positives = 500/937 (53%), Gaps = 61/937 (6%)

Query: 665  EKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSI 719
            E+++ W+LDSGCS HM G +  FL L       V+ G ++   + G G +     G   +
Sbjct: 253  EEKQIWFLDSGCSNHMCGTREWFLELDSGFKQNVRLGDDRRMAVEGKGKLRLEVDGRIQV 312

Query: 720  SINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINF 779
             I++V+ V GLK+NL S+ Q              C + +K +K +       +N   + F
Sbjct: 313  -ISDVYFVPGLKNNLFSVGQLQQKGLRFIIEGDVCEVWHKTEKRMVMHSTMTKNRMFVVF 371

Query: 780  SDLADQKVV----CLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDY-HSDAL 834
            + +   K      CL  +     +WHKR GH N + +  +++ ++VKGLP  D    +A+
Sbjct: 372  AAVKKSKETEETRCLQVIGKANNMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAV 431

Query: 835  CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTW 894
            C  C KGK ++ S   +    +++ L+L+H D+ GP+N AS  G +Y L  +DD+SR  W
Sbjct: 432  CDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCW 491

Query: 895  VKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSS 954
               +  K    + F  F  +++ E   K++ +RSD GGE+ +  F+ +C++ GI  + ++
Sbjct: 492  TYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTA 551

Query: 955  PRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAY 1014
              TPQQNGV ERKNR++  M R M+ E ++ + FW EAV  + YI NR   + + + T  
Sbjct: 552  AYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPE 611

Query: 1015 ELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQC 1074
            E +   +P++ +   FG   Y L       K D K+ + +  G S+ SKAYR+Y+  T  
Sbjct: 612  EKWSSWKPSVEHLRIFGSLAYALVPYQKRIKLDEKSIKCVMFGVSKESKAYRLYDPATGK 671

Query: 1075 VEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPE 1134
            +  S  V+FD+ E G +  ++S       D+ D   + +      +   +   E E   E
Sbjct: 672  ILISRDVQFDE-ERGWEWEDKSLEEELVWDNSDHEPAGEEGPEINHNGQQDQEETEEEEE 730

Query: 1135 AESNSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFR 1194
              + +  ++ P V      +      QQ +  K         + ++G+    R   +   
Sbjct: 731  TVAETVHQNLPAVGTGGVRQ-----RQQPVWMK---------DYVVGNA---RVLITQDE 773

Query: 1195 QEESLIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWV 1254
            ++E L   +   +P   EEA   + W  AM+ E+   + N+ W+LV  P +  +I  KW+
Sbjct: 774  EDEVLALFIGPDDPVCFEEAAQLEVWRKAMEAEITSIEENNTWELVELPEEAKVIGLKWI 833

Query: 1255 FRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQ 1314
            F+ K NE+GEV + KARLVA+GY Q+ G+++ E FAPVA+ +TIRL+L  A   G  ++Q
Sbjct: 834  FKTKFNEKGEVDKFKARLVAKGYHQRYGVDFYEVFAPVAKWDTIRLILGLAAEKGWSVFQ 893

Query: 1315 MDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1374
            +DVKS FL+G ++E+V+V+QP GFE  +    VYKLKK+LYGLKQAPRAWY R+  F  K
Sbjct: 894  LDVKSAFLHGDLKEDVFVEQPKGFEVEEESSKVYKLKKALYGLKQAPRAWYSRIEEFFGK 953

Query: 1375 NDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGEL 1434
              FE+   + TLF +  + D L+V +YVDD+I+  ++  + + F   M +EF M+ +G++
Sbjct: 954  EGFEKCYCEHTLFVKKERSDFLVVSVYVDDLIYTGSSMEMIEGFKNSMMEEFAMTDLGKM 1013

Query: 1435 KFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQK 1494
            K+FLG+++ Q + G++++Q KY  E++KK+ +E C  +  P+ P   L+K   G V    
Sbjct: 1014 KYFLGVEVIQDERGIFINQRKYAAEIIKKYGMEGCNSVKNPIVPGQKLTK--AGAV---- 1067

Query: 1495 LYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRK 1554
                                      +R+   P E HL AVKRI RY++GT +LG+ Y +
Sbjct: 1068 --------------------------SRYMESPNEQHLLAVKRILRYVQGTLDLGIQYER 1101

Query: 1555 SLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
                +L+GF D+DYAGD  +RKSTSG    LG   I+
Sbjct: 1102 GGATELVGFVDSDYAGDVDDRKSTSGYVFMLGGGAIA 1138



 Score = 94.0 bits (232), Expect = 6e-19
 Identities = 66/240 (27%), Positives = 111/240 (45%), Gaps = 32/240 (13%)

Query: 94  KHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYELFR 153
           K HK++  + ASI +T    +  K T+K ++ S+   ++G+  V+ A+   L   +E+  
Sbjct: 24  KDHKVKNYLFASIDKTILKTILQKETSKDLWESMKRKYQGNDRVQSAQLQRLRRSFEVLE 83

Query: 154 MKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDLNT 213
           MK  E+I   +SR   + + ++ L +    S  V KILR+L  ++   V AIEE+ ++  
Sbjct: 84  MKIGETITGYFSRVMEITNDMRNLGEDMPDSKVVEKILRTLVEKFTYVVCAIEESNNIKE 143

Query: 214 LSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDE 273
           L+V+ L SSL VHE +L+ H+  +           +  K+   ++        PDG    
Sbjct: 144 LTVDGLQSSLMVHEQNLSRHDVEE-----------RVLKAETQWR--------PDGGRGR 184

Query: 274 DQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDLQKE 333
             S              R +  +  +   Y N    D   CF C K GH+ A+CP  +KE
Sbjct: 185 GGSPSR----------GRGRGGYQGRGRGYVN---RDTVECFKCHKMGHYKAECPSWEKE 231


>At2g20460 putative retroelement pol polyprotein
          Length = 1461

 Score =  515 bits (1326), Expect = e-146
 Identities = 333/1057 (31%), Positives = 541/1057 (50%), Gaps = 63/1057 (5%)

Query: 547  KDGLKSTFVPEGTNAVTVVQSKPEASGSQAKITSKPENLKIKVMTKS---DPKSQKIKIL 603
            K G    F P+G ++       P+     A++T  P+ +  ++ T +    P   +  I 
Sbjct: 329  KHGFPPGFTPKGKSS----DKPPKPQAVAAQVTLSPDKMTGQLETLAGNFSPDQIQNLIA 384

Query: 604  KRSEPVHQNLIKPESKIPKQKDQKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRA 663
              S  +   ++ P++   + +      A++S+   P G+   + +      I        
Sbjct: 385  LFSSQLQPQIVSPQTASSQHE------ASSSQSVAPSGI---LFSPSTYCFIGILAVSHN 435

Query: 664  REKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTG---KIIGTGTIG-NSSI 719
                 +W +DSG + H++ ++ LF TL   D   V F    TG   +I G GT+  N  I
Sbjct: 436  SLSSDTWVIDSGATHHVSHDRKLFQTL---DTSIVSFVNLPTGPNVRISGVGTVLINKDI 492

Query: 720  SINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITF-KGKRVENVYKIN 778
             + NV  +   + NL+SIS    +         +C  +    K +T  +GKR+ N+Y ++
Sbjct: 493  ILQNVLFIPEFRLNLISISSLTTDLGTRVIFDPSCCQIQDLTKGLTLGEGKRIGNLYVLD 552

Query: 779  FSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGAC 838
                A    + + ++ D   VWHKRLGH ++   S++  L  V G         A C  C
Sbjct: 553  TQSPA----ISVNAVVDVS-VWHKRLGHPSF---SRLDSLSEVLGTTRHKNKKSAYCHVC 604

Query: 839  QKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI 898
               K  K SF S + +  S   ELLHID++GP +  ++ G KY L IVDD+SR TW+  +
Sbjct: 605  HLAKQKKLSFPSANNICNST-FELLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWIYLL 663

Query: 899  KSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTP 958
            KSK     VF +F   ++++ + ++  VRSD+  E     F  F +  GI+   S P TP
Sbjct: 664  KSKSDVLTVFPAFIDLVENQYDTRVKSVRSDNAKELA---FTEFYKAKGIVSFHSCPETP 720

Query: 959  QQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFK 1018
            +QN VVERK++ +  +AR ++ ++N++  +W + V T+ ++ NR     +  KT +E+  
Sbjct: 721  EQNSVVERKHQHILNVARALMFQSNMSLPYWGDCVLTAVFLINRTPSALLSNKTPFEVLT 780

Query: 1019 GRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEES 1078
            G+ P+ S    FGC CY   +     KF  +++  +FLGY    K Y++ + E+  V  S
Sbjct: 781  GKLPDYSQLKTFGCLCYSSTSSKQRHKFLPRSRACVFLGYPFGFKGYKLLDLESNVVHIS 840

Query: 1079 MHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESN 1138
             +V+F +      +S+QS     TT S+  +  D  S     T    SP+  I+P  + +
Sbjct: 841  RNVEFHEELFPLASSQQS----ATTASDVFTPMDPLSSGNSITSHLPSPQ--ISPSTQIS 894

Query: 1139 SEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEES 1198
                +            F  + Q           SHP   I  S    + + SH      
Sbjct: 895  KRRITK-----------FPAHLQDYHCYFVNKDDSHP---ISSSLSYSQISPSHMLY--- 937

Query: 1199 LIGLLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNK 1258
            +  +  I  P++  EA     W  A+ +E+   +R D W++   P  K  +  KWVF  K
Sbjct: 938  INNISKIPIPQSYHEAKDSKEWCGAIDQEIGAMERTDTWEITSLPPGKKAVGCKWVFTVK 997

Query: 1259 LNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVK 1318
             +  G + R KAR+VA+GY+Q+EG++YTETF+PVA++ T++LLL  + +    L Q+D+ 
Sbjct: 998  FHADGSLERFKARIVAKGYTQKEGLDYTETFSPVAKMATVKLLLKVSASKKWYLNQLDIS 1057

Query: 1319 SVFLNGVIEEEVYVKQPPGFEDLKH----PDHVYKLKKSLYGLKQAPRAWYDRLSNFLIK 1374
            + FLNG +EE +Y+K P G+ D+K     P+ V +LKKS+YGLKQA R W+ + SN L+ 
Sbjct: 1058 NAFLNGDLEETIYMKLPDGYADIKGTSLPPNVVCRLKKSIYGLKQASRQWFLKFSNSLLA 1117

Query: 1375 NDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGEL 1434
              FE+   D TLF R +  + +++ +YVDDI+  ST     +  ++ ++  F++  +G L
Sbjct: 1118 LGFEKQHGDHTLFVRCIGSEFIVLLVYVDDIVIASTTEQAAQSLTEALKASFKLRELGPL 1177

Query: 1435 KFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQK 1494
            K+FLG+++ ++ EG+ + Q KY  ELL    + DCK  + PM P   LSK D   + D++
Sbjct: 1178 KYFLGLEVARTSEGISLSQRKYALELLTSADMLDCKPSSIPMTPNIRLSKNDGLLLEDKE 1237

Query: 1495 LYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRK 1554
            +YR ++G L+YLT +RPDI F+V    +F S PR +HL AV ++ +Y+KGT   GL Y  
Sbjct: 1238 MYRRLVGKLMYLTITRPDITFAVNKLCQFSSAPRTAHLAAVYKVLQYIKGTVGQGLFYSA 1297

Query: 1555 SLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
              D  L G+ DAD+      R+ST+G   F+G +LIS
Sbjct: 1298 EDDLTLKGYTDADWGTCPDSRRSTTGFTMFVGSSLIS 1334


>At2g05390 putative retroelement pol polyprotein
          Length = 1307

 Score =  511 bits (1316), Expect = e-144
 Identities = 306/924 (33%), Positives = 498/924 (53%), Gaps = 51/924 (5%)

Query: 669  SWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINN 723
            SWYLD+G S HMTG    F  L     G+V+FG +    I G G+I     G    ++ +
Sbjct: 279  SWYLDNGASNHMTGNLQWFSKLNEMITGKVRFGDDSRIDIKGKGSIVLITKGGIRKTLTD 338

Query: 724  VWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLA 783
            V+ +  LK N++S+ Q  +   DV       TL +++   +    +    +YK+   DL 
Sbjct: 339  VYFIPDLKSNIISLGQATEAGCDVRMKDDQLTLHDREGCLLLRATRSRNRLYKV---DLN 395

Query: 784  DQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKI 843
             + V CL            +L  A       + + +LV G+ NI    +  CG+C  GK 
Sbjct: 396  VENVKCL------------QLEAAT------MVRKELVIGISNIPKEKET-CGSCLLGKQ 436

Query: 844  VKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDY 903
             +  F        S+ LEL+H DL GP+  ++    +Y LV++DD++R+ W   +K K  
Sbjct: 437  ARQPFPKATTYRASQVLELVHGDLCGPITQSTTAKKRYILVLIDDHTRYMWSMLLKEKSE 496

Query: 904  ACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGV 963
            A E F  F T+++ E  +KI   R+D GGEF ++ F+ FC K GI    ++P TPQQNGV
Sbjct: 497  AFEKFRDFKTKVEQESGVKIKTFRTDKGGEFVSQEFQDFCAKEGINRHLTAPYTPQQNGV 556

Query: 964  VERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPN 1023
            VER+NRTL  M R+++    +  + W EAV  S YI NR+  R +  +T YE+FK R+PN
Sbjct: 557  VERRNRTLLGMTRSILKHMKMPNYLWGEAVRHSTYIINRVGTRSLQNQTPYEVFKQRKPN 616

Query: 1024 ISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKF 1083
            + +   FGC  Y      +L+K D +++  ++LG    SKAYR+ +   + + +  +   
Sbjct: 617  VEHLRVFGCIGYAKIEGPHLRKLDDRSKMLVYLGTEPGSKAYRLLDPTNRKIIKWNNSDS 676

Query: 1084 DDRE-PGSKTSEQSE-SNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEA 1141
            + R+  G+ +    E  N G  +S+D        +SE   + E   E     E E     
Sbjct: 677  ETRDISGTFSLTLGEFGNNGIQESDDIETEKNGEESENSHEEEGENEHN---EQEQIDAE 733

Query: 1142 ESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG 1201
            E+ P   + +     + +T+QV +P +       ++ ++          +    E+ L+ 
Sbjct: 734  ETQP--SHATPLPTLRRSTRQVGKPNYL------DDYVL---------MAEIEGEQVLLA 776

Query: 1202 LLSIIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNE 1261
            +    EP   +EA     W  A +EE+   ++N  W L+  P ++ +I  KWVF+ K N 
Sbjct: 777  IND--EPWDFKEANKLKEWRDACKEEILSIEKNKTWSLIDLPVRRKVIGLKWVFKIKRNS 834

Query: 1262 QGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVF 1321
             G + + KARLVA+GY Q+ GI+Y E FA VAR+ETIR++++ A ++G  ++ +DVK+ F
Sbjct: 835  DGSINKYKARLVAKGYVQRHGIDYDEVFAHVARIETIRVIIALAASNGWEVHHLDVKTAF 894

Query: 1322 LNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQ 1381
            L+G + E+VYV QP GF +  +   VYKL K+LYGLKQAPRAW  +L+  L + +F +  
Sbjct: 895  LHGELREDVYVTQPEGFTNKDNEGKVYKLHKALYGLKQAPRAWNTKLNKILQELNFVKCS 954

Query: 1382 VDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1441
             + +++RR  +K +LIV IYVDD++   ++  L   F K M  +FEMS +G+L ++LGI+
Sbjct: 955  KEPSVYRRQEEKKLLIVAIYVDDLLVTGSSLDLILCFKKDMAGKFEMSDLGQLTYYLGIE 1014

Query: 1442 INQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIG 1501
            +   K G+ + Q +Y  +++++  + +C  +  PM     L K      + ++ YR MIG
Sbjct: 1015 VLHRKNGIILRQERYAMKIIEEAGMSNCNPVLIPMAAGLELCKAQEEKCITERDYRRMIG 1074

Query: 1502 SLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLI 1561
             L Y+  +RPD+ + V + +R+   PRESH  A+K++ RYLKGT + GL  ++     L+
Sbjct: 1075 CLRYIVHTRPDLSYCVGVLSRYLQQPRESHGNALKQVLRYLKGTMSHGLYLKRGFKSGLV 1134

Query: 1562 GFCDADYAGDRIERKSTSGNCQFL 1585
            G+ D+ ++ D  + KST+G+  +L
Sbjct: 1135 GYSDSSHSADLDDGKSTAGHIFYL 1158



 Score = 87.4 bits (215), Expect = 6e-17
 Identities = 61/288 (21%), Positives = 126/288 (43%), Gaps = 54/288 (18%)

Query: 58  ELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKKLYKKHHKIRGIIVASIPRTEYMKMSDK 117
           ++W+ ++ G DD++                      K+   R ++  S+P +  +++   
Sbjct: 9   KVWETIDPGSDDME----------------------KNDMARALLFQSVPESTILQVGKH 46

Query: 118 STAKAMFASLCANFEGSKNVKEAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQIL 177
            T+KAM+ ++     G++ VKEAK   L+ +++   MKD+E+I+E   R   + +  + L
Sbjct: 47  KTSKAMWEAIKTRNLGAERVKEAKLQTLMAEFDRLNMKDNETIDEFVGRISEISTKSESL 106

Query: 178 KKSYVASDHVSKILRSLP-SRWRPKVTAIEEAKDLNTLSVEDLVSSLKVHEMSLNEHETS 236
            +    S  V K L+SLP  ++   + A+E+  DLNT   ED+V  +K +E  + + + S
Sbjct: 107 GEEIEESKIVKKFLKSLPRKKYIHIIAALEQILDLNTTGFEDIVGRMKTYEDRVCDEDDS 166

Query: 237 KKSKSIALPSKGKTSKSSKAYKASESEEESPDGDSDEDQSVKMAMLSNKLEYLARKQKKF 296
            + +   + +  ++S  ++  +       S  G                           
Sbjct: 167 PEEQGKLMYANSESSYDTRGGRGRGRGRSSGRG--------------------------- 199

Query: 297 LSKRGSYKNSKKEDQKG-CFNCKKPGHFIADCPDLQKEKFKGKSKKSS 343
              RG Y   +++  K  C+ C K GH+ ++C D   +  K + ++ +
Sbjct: 200 ---RGGYGYQQRDKSKVICYRCDKTGHYASECLDRLLKLIKAQEQQQN 244


>At1g31210 putative reverse transcriptase
          Length = 1415

 Score =  497 bits (1280), Expect = e-140
 Identities = 310/941 (32%), Positives = 493/941 (51%), Gaps = 36/941 (3%)

Query: 668  RSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKII---GTGTI--GNSSISIN 722
            + W+ DS  + H+T       + T  +G +    G+ T   I   G+ TI   N  I +N
Sbjct: 320  KEWHPDSAATAHVTSSTNGLQSATEYEGDDAVLVGDGTYLPITHTGSTTIKSSNGKIPLN 379

Query: 723  NVWLVDGLKHNLLSISQFCDN-EYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSD 781
             V +V  ++ +LLS+S+ CD+    V F      +++   + +   G R   +Y      
Sbjct: 380  EVLVVPNIQKSLLSVSKLCDDYPCGVYFDANKVCIIDLQTQKVVTTGPRRNGLYV----- 434

Query: 782  LADQKVVCLLSMND---KKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGAC 838
            L +Q+ V L S       + VWH RLGHAN + +     LQ  K +      +  +C  C
Sbjct: 435  LENQEFVALYSNRQCAATEEVWHHRLGHANSKALQH---LQNSKAIQINKSRTSPVCEPC 491

Query: 839  QKGKIVKSSFKSKDIVSTSR---PLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWV 895
            Q GK  +  F    ++S SR   PL+ +H DL+GP    S  G KY  + VDDYSR++W 
Sbjct: 492  QMGKSSRLPF----LISDSRVLHPLDRIHCDLWGPSPVVSNQGLKYYAIFVDDYSRYSWF 547

Query: 896  KFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSP 955
              + +K     VF SF   ++++   KI   +SD GGEF +   +    +HGI H  S P
Sbjct: 548  YPLHNKSEFLSVFISFQKLVENQLNTKIKVFQSDGGGEFVSNKLKTHLSEHGIHHRISCP 607

Query: 956  RTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYE 1015
             TPQQNG+ ERK+R L E+  +M+  ++  + FW E+  T+ YI NR+    +   + YE
Sbjct: 608  YTPQQNGLAERKHRHLVELGLSMLFHSHTPQKFWVESFFTANYIINRLPSSVLKNLSPYE 667

Query: 1016 LFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCV 1075
               G +P+ S    FG  CY         KFD ++ + +FLGY+ + K YR +   T  V
Sbjct: 668  ALFGEKPDYSSLRVFGSACYPCLRPLAQNKFDPRSLQCVFLGYNSQYKGYRCFYPPTGKV 727

Query: 1076 EESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEA 1135
              S +V F++ E   K   QS     +T    A + ++ S+      V ++P    +   
Sbjct: 728  YISRNVIFNESELPFKEKYQSLVPQYSTPLLQAWQHNKISE----ISVPAAPVQLFSKPI 783

Query: 1136 ESNSEAESSPIVQ-NESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFR 1194
            + N+ A S    Q  +       + + + + P  +  +++ E+ +I S     R+++  +
Sbjct: 784  DLNTYAGSQVTEQLTDPEPTSNNEGSDEEVNPVAEEIAANQEQ-VINSHAMTTRSKAGIQ 842

Query: 1195 QEESLIGLLS----IIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIE 1250
            +  +   L++      EPKT+  A+   GW  A+ EE+N+      W LVP     NI+ 
Sbjct: 843  KPNTRYALITSRMNTAEPKTLASAMKHPGWNEAVHEEINRVHMLHTWSLVPPTDDMNILS 902

Query: 1251 TKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGI 1310
            +KWVF+ KL+  G + + KARLVA+G+ Q+EG++Y ETF+PV R  TIRL+L  + + G 
Sbjct: 903  SKWVFKTKLHPDGSIDKLKARLVAKGFDQEEGVDYLETFSPVVRTATIRLVLDVSTSKGW 962

Query: 1311 ILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSN 1370
             + Q+DV + FL+G ++E V++ QP GF D + P HV +L K++YGLKQAPRAW+D  SN
Sbjct: 963  PIKQLDVSNAFLHGELQEPVFMYQPSGFIDPQKPTHVCRLTKAIYGLKQAPRAWFDTFSN 1022

Query: 1371 FLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSM 1430
            FL+   F   + D +LF       IL + +YVDDI+   ++ SL ++  + +++ F M  
Sbjct: 1023 FLLDYGFVCSKSDPSLFVCHQDGKILYLLLYVDDILLTGSDQSLLEDLLQALKNRFSMKD 1082

Query: 1431 MGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTV 1490
            +G  ++FLGIQI     G+++HQT Y  ++L++  + DC  M TP+     L   ++   
Sbjct: 1083 LGPPRYFLGIQIEDYANGLFLHQTAYATDILQQAGMSDCNPMPTPLPQ--QLDNLNSELF 1140

Query: 1491 VDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGL 1550
             +   +R + G L YLT +RPDI F+V    +    P  S    +KRI RY+KGT  +GL
Sbjct: 1141 AEPTYFRSLAGKLQYLTITRPDIQFAVNFICQRMHSPTTSDFGLLKRILRYIKGTIGMGL 1200

Query: 1551 LYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
              +++    L  + D+D+AG +  R+ST+G C  LG NLIS
Sbjct: 1201 PIKRNSTLTLSAYSDSDHAGCKNTRRSTTGFCILLGSNLIS 1241


>At2g16000 putative retroelement pol polyprotein
          Length = 1454

 Score =  492 bits (1267), Expect = e-139
 Identities = 305/931 (32%), Positives = 494/931 (52%), Gaps = 41/931 (4%)

Query: 669  SWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG-NSSISINNVWLV 727
            +W +DSG + H++ +++LF +L       V      T KI G GT+  N  I + NV  +
Sbjct: 430  TWVIDSGATHHVSHDRSLFSSLDTSVLSAVNLPTGPTVKISGVGTLKLNDDILLKNVLFI 489

Query: 728  DGLKHNLLSISQFCDNEYD-VTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQK 786
               + NL+SIS   D+    V F K +C + +     +  +G+RV N+Y +   D+ DQ 
Sbjct: 490  PEFRLNLISISSLTDDIGSRVIFDKNSCEIQDLIKGRMLGQGRRVANLYLL---DVGDQS 546

Query: 787  VVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKS 846
            +     ++    +WH+RLGHA+ + +  IS      G           C  C   K  K 
Sbjct: 547  ISVNAVVDIS--MWHRRLGHASLQRLDAISDSL---GTTRHKNKGSDFCHVCHLAKQRKL 601

Query: 847  SFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKDYACE 906
            SF + + V      +LLHID++GP +  ++ G KY L IVDD+SR TW+  +K+K     
Sbjct: 602  SFPTSNKVC-KEIFDLLHIDVWGPFSVETVEGYKYFLTIVDDHSRATWMYLLKTKSEVLT 660

Query: 907  VFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVER 966
            VF +F  Q++++ ++K+  VRSD+  E +   F  F  + GI+   S P TP+QN VVER
Sbjct: 661  VFPAFIQQVENQYKVKVKAVRSDNAPELK---FTSFYAEKGIVSFHSCPETPEQNSVVER 717

Query: 967  KNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISY 1026
            K++ +  +AR ++ ++ +    W + V T+ ++ NR   + ++ KT YE+  G  P    
Sbjct: 718  KHQHILNVARALMFQSQVPLSLWGDCVLTAVFLINRTPSQLLMNKTPYEILTGTAPVYEQ 777

Query: 1027 FHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDR 1086
               FGC CY   +     KF  +++  +FLGY    K Y++ + E+  V  S +V+F + 
Sbjct: 778  LRTFGCLCYSSTSPKQRHKFQPRSRACLFLGYPSGYKGYKLMDLESNTVFISRNVQFHEE 837

Query: 1087 E-PGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAESSP 1145
              P +K       N G+  S        P  S   +    SP +  +  ++   +  S  
Sbjct: 838  VFPLAK-------NPGSESSLKLFTPMVPVSSGIISDTTHSPSSLPSQISDLPPQISSQR 890

Query: 1146 IVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIG-SKDSPRRTRSHFRQEESLIGLLS 1204
            + +  +   D+  NT Q       HK  +P    I  SK SP    SH      +  +  
Sbjct: 891  VRKPPAHLNDYHCNTMQS-----DHK--YPISSTISYSKISP----SHMCY---INNITK 936

Query: 1205 IIEPKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQGE 1264
            I  P    EA     W  A+  E+   ++ + W++   P  K  +  KWVF  K    G 
Sbjct: 937  IPIPTNYAEAQDTKEWCEAVDAEIGAMEKTNTWEITTLPKGKKAVGCKWVFTLKFLADGN 996

Query: 1265 VTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNG 1324
            + R KARLVA+GY+Q+EG++YT+TF+PVA++ TI+LLL  + +    L Q+DV + FLNG
Sbjct: 997  LERYKARLVAKGYTQKEGLDYTDTFSPVAKMTTIKLLLKVSASKKWFLKQLDVSNAFLNG 1056

Query: 1325 VIEEEVYVKQPPGFEDLKH----PDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERG 1380
             +EEE+++K P G+ + K      + V +LK+S+YGLKQA R W+ + S+ L+   F++ 
Sbjct: 1057 ELEEEIFMKIPEGYAERKGIVLPSNVVLRLKRSIYGLKQASRQWFKKFSSSLLSLGFKKT 1116

Query: 1381 QVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGI 1440
              D TLF +    + +IV +YVDDI+  ST+ +   + ++ +   F++  +G+LK+FLG+
Sbjct: 1117 HGDHTLFLKMYDGEFVIVLVYVDDIVIASTSEAAAAQLTEELDQRFKLRDLGDLKYFLGL 1176

Query: 1441 QINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMI 1500
            ++ ++  G+ + Q KY  ELL+   +  CK ++ PM P   + K+D   + D + YR ++
Sbjct: 1177 EVARTTAGISICQRKYALELLQSTGMLACKPVSVPMIPNLKMRKDDGDLIEDIEQYRRIV 1236

Query: 1501 GSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKL 1560
            G L+YLT +RPDI F+V    +F S PR +HLTA  R+ +Y+KGT   GL Y  S D  L
Sbjct: 1237 GKLMYLTITRPDITFAVNKLCQFSSAPRTTHLTAAYRVLQYIKGTVGQGLFYSASSDLTL 1296

Query: 1561 IGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
             GF D+D+A  +  R+ST+    F+G++LIS
Sbjct: 1297 KGFADSDWASCQDSRRSTTSFTMFVGDSLIS 1327


>At1g70010 hypothetical protein
          Length = 1315

 Score =  473 bits (1218), Expect = e-133
 Identities = 303/901 (33%), Positives = 469/901 (51%), Gaps = 44/901 (4%)

Query: 708  IIGTGTIGNSSISINNVWLVDGLKHNLLSISQFCDNE-YDVTFSKTNCTLVNKDDKSITF 766
            I G+  +G   I +N+V  +   K NLLS+S    +    + F +T+C L +   + +  
Sbjct: 313  ISGSVHLGRHLI-LNDVLFIPQFKFNLLSVSSLTKSMGCRIWFDETSCVLQDATRELMVG 371

Query: 767  KGKRVENVYKINFSDLA----DQKV-VCLLSMNDKKWVWHKRLGHANWRLISKISKL-QL 820
             GK+V N+Y ++   L+    D  + V  ++ +D   +WHKRLGH + + +  +S L   
Sbjct: 372  MGKQVANLYIVDLDSLSHPGTDSSITVASVTSHD---LWHKRLGHPSVQKLQPMSSLLSF 428

Query: 821  VKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSK 880
             K   N D+H    C  C   K     F S +  S SRP +L+HID +GP +  +  G +
Sbjct: 429  PKQKNNTDFH----CRVCHISKQKHLPFVSHNNKS-SRPFDLIHIDTWGPFSVQTHDGYR 483

Query: 881  YGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFE 940
            Y L IVDDYSR TWV  +++K     V  +F T ++++ E  I  VRSD+  E     F 
Sbjct: 484  YFLTIVDDYSRATWVYLLRNKSDVLTVIPTFVTMVENQFETTIKGVRSDNAPELN---FT 540

Query: 941  LFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQ 1000
             F    GI+   S P TPQQN VVERK++ +  +AR++  ++++   +W + + T+ Y+ 
Sbjct: 541  QFYHSKGIVPYHSCPETPQQNSVVERKHQHILNVARSLFFQSHIPISYWGDCILTAVYLI 600

Query: 1001 NRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSE 1060
            NR+    + +K  +E+     P   +   FGC CY   +     KF  +A+   F+GY  
Sbjct: 601  NRLPAPILEDKCPFEVLTKTVPTYDHIKVFGCLCYASTSPKDRHKFSPRAKACAFIGYPS 660

Query: 1061 RSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKY 1120
              K Y++ + ET  +  S HV F +       S+ S+         + +   Q   S+  
Sbjct: 661  GFKGYKLLDLETHSIIVSRHVVFHEELFPFLGSDLSQEEQNFFPDLNPTPPMQRQSSDHV 720

Query: 1121 TKVESSPEAEITPEAE-SNSEAESSPIVQNESASEDFQDNTQQVIQPKFKHK--SSHPEE 1177
               +SS   EI P A  +N+  E S    +  A +         +Q  + H   SS P E
Sbjct: 721  NPSDSSSSVEILPSANPTNNVPEPSVQTSHRKAKKP------AYLQDYYCHSVVSSTPHE 774

Query: 1178 LIIGSKDSPRRTRSHFRQEESLIGLLSII----EPKTVEEALSDDGWILAMQEELNQFQR 1233
            +        R+  S+ R  +  +  L+ +    EP    EA     W  AM  E +  + 
Sbjct: 775  I--------RKFLSYDRINDPYLTFLACLDKTKEPSNYTEAEKLQVWRDAMGAEFDFLEG 826

Query: 1234 NDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVA 1293
               W++   P  K  I  +W+F+ K N  G V R KARLVAQGY+Q+EGI+Y ETF+PVA
Sbjct: 827  THTWEVCSLPADKRCIGCRWIFKIKYNSDGSVERYKARLVAQGYTQKEGIDYNETFSPVA 886

Query: 1294 RLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFE----DLKHPDHVYK 1349
            +L +++LLL  A    + L Q+D+ + FLNG ++EE+Y++ P G+     D   P+ V +
Sbjct: 887  KLNSVKLLLGVAARFKLSLTQLDISNAFLNGDLDEEIYMRLPQGYASRQGDSLPPNAVCR 946

Query: 1350 LKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGS 1409
            LKKSLYGLKQA R WY + S+ L+   F +   D T F +      L V +Y+DDII  S
Sbjct: 947  LKKSLYGLKQASRQWYLKFSSTLLGLGFIQSYCDHTCFLKISDGIFLCVLVYIDDIIIAS 1006

Query: 1410 TNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDC 1469
             N +        M+  F++  +GELK+FLG++I +S +G+++ Q KY  +LL +     C
Sbjct: 1007 NNDAAVDILKSQMKSFFKLRDLGELKYFLGLEIVRSDKGIHISQRKYALDLLDETGQLGC 1066

Query: 1470 KVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRE 1529
            K  + PM P+   + +  G  V+   YR +IG L+YL  +RPDI F+V   A+F   PR+
Sbjct: 1067 KPSSIPMDPSMVFAHDSGGDFVEVGPYRRLIGRLMYLNITRPDITFAVNKLAQFSMAPRK 1126

Query: 1530 SHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENL 1589
            +HL AV +I +Y+KGT   GL Y  + + +L  + +ADY   R  R+STSG C FLG++L
Sbjct: 1127 AHLQAVYKILQYIKGTIGQGLFYSATSELQLKVYANADYNSCRDSRRSTSGYCMFLGDSL 1186

Query: 1590 I 1590
            I
Sbjct: 1187 I 1187


>At2g13930 putative retroelement pol polyprotein
          Length = 1335

 Score =  452 bits (1163), Expect = e-127
 Identities = 317/1035 (30%), Positives = 514/1035 (49%), Gaps = 91/1035 (8%)

Query: 596  KSQKIKILKRSEPVHQNLIKPESKIPKQKDQKNKAAT--ASEKTIPKGVKPKVLNDQKPL 653
            K Q  K ++R++   Q     ES + K  +  N A    A+++T+   V   + N+    
Sbjct: 231  KKQCYKWIERNKSKQQGSDNGESSLAKSTEAFNPAMVLLATDETLV--VTDSIANE---- 284

Query: 654  SIHPKVCLRAREKQRSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGT 713
                            W LD+GCS HMT  K  F        G VK G +    + G G+
Sbjct: 285  ----------------WVLDTGCSFHMTPRKDWFKDFKELSSGYVKMGNDTYSPVKGIGS 328

Query: 714  I-----GNSSISINNVWLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKG 768
            I       S + + +V  +  +  NL+S+    D      F   +  L      S   KG
Sbjct: 329  IKIRNSDGSQVILTDVRYMPNMTRNLISLGTLEDR--GCWFKSQDGILKIVKGCSTILKG 386

Query: 769  KRVENVYKINFSDLADQKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNID 828
            ++ + +Y ++     + +      + D+  +WH RLGH +     K  ++ + KG    +
Sbjct: 387  QKRDTLYILD-GVTEEGESHSSAEVKDETALWHSRLGHMS----QKGMEILVKKGCLRRE 441

Query: 829  YHSDA-LCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIV 886
               +   C  C  GK  + SF     V T   L  +H DL+G P N ASL  S+Y +  V
Sbjct: 442  VIKELEFCEDCVYGKQHRVSFAPAQHV-TKEKLAYVHSDLWGSPHNPASLGNSQYFISFV 500

Query: 887  DDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKH 946
            DDYSR  W+ F++ KD A E F  +   ++++ + K+ K+R+D+G E+ N  FE FC++ 
Sbjct: 501  DDYSRKVWIYFLRKKDEAFEKFVEWKKMVENQSDRKVKKLRTDNGLEYCNHYFEKFCKEE 560

Query: 947  GILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIR 1006
            GI+   +   TPQQNG+ ER NRT+ +  R+M+  + + K FWAEA +T+ Y+ NR    
Sbjct: 561  GIVRHKTCAYTPQQNGIAERLNRTIMDKVRSMLSRSGMEKKFWAEAASTAVYLINRSPST 620

Query: 1007 PMLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYR 1066
             +      E + G  P++S   +FGC  YI   +    K + ++++GIF  Y E  K Y+
Sbjct: 621  AINFDLPEEKWTGALPDLSSLRKFGCLAYIHADQG---KLNPRSKKGIFTSYPEGVKGYK 677

Query: 1067 VYNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSE-----KYT 1121
            V+  E +    S +V F ++         S++    +D ED   +   +D E       T
Sbjct: 678  VWVLEDKKCVISRNVIFREQVMFKDLKGDSQNTISESDLEDLRVNPDMNDQEFTDQGGAT 737

Query: 1122 KVESSPEAEITP----------EAESNSEAESSPIVQNESASEDFQDNTQQVIQPKFKHK 1171
            +  S+P    T             +  SE E S  V++ S  +  +D  ++ I+   K+ 
Sbjct: 738  QDNSNPSEATTSHNPVLNSPTHSQDEESEEEDSDAVEDLSTYQLVRDRVRRTIKANPKYN 797

Query: 1172 SSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSD---DGWILAMQEEL 1228
             S+       S+D  +                   EPK+ +EAL D   + W  AM+EE+
Sbjct: 798  ESNMVGFAYYSEDDGKP------------------EPKSYQEALLDPDWEKWNAAMKEEM 839

Query: 1229 NQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGINYTE 1287
                +N  WDLV KP +  +I  +WVF  K    G E  R  ARLVA+G++Q+EG++Y E
Sbjct: 840  VSMSKNHTWDLVTKPEKVKLIGCRWVFTRKAGIPGVEAPRFIARLVAKGFTQKEGVDYNE 899

Query: 1288 TFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHV 1347
             F+PV +  +IR LLS  +++ + L QMDVK+ FL+G +EEE+Y+ QP GFE  +  + V
Sbjct: 900  IFSPVVKHVSIRYLLSMVVHYNMELQQMDVKTAFLHGFLEEEIYMAQPEGFEIKRGSNKV 959

Query: 1348 YKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKKDILI-VQIYVDDII 1406
              LK+SLYGLKQ+PR W  R   F+    + R   D+ ++ +    D  I + +YVDD++
Sbjct: 960  CLLKRSLYGLKQSPRQWNLRFDEFMRGIKYTRSAYDSCVYFKKCNGDTYIYLLLYVDDML 1019

Query: 1407 FGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKF 1464
              S N S   E  +L+  EFEM  +G+ K  LG++I++ ++   + + Q  Y K++L+ F
Sbjct: 1020 IASANKSEVNELKQLLSREFEMKDLGDAKKILGMEISRDRDAGLLTLSQEGYVKKVLRSF 1079

Query: 1465 KLEDCKVMNTPMHPTCTLSKEDTGTVVDQKL-------YRGMIGSLLY-LTASRPDILFS 1516
            ++++ K ++TP+     L K  T    +++        Y   IGS++Y +  +RPD+ +S
Sbjct: 1080 QMDNAKPVSTPLGIHFKL-KAATDKEYEEQFERMKIVPYANTIGSIMYSMIGTRPDLAYS 1138

Query: 1517 VCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERK 1576
            + + +RF S P + H  AVK + RY++GT    L +RK  D+ L G+CD+DY  +   R+
Sbjct: 1139 LGVISRFMSKPLKDHWQAVKWVLRYMRGTEKKKLCFRKQEDFLLRGYCDSDYGSNFDTRR 1198

Query: 1577 STSGNCQFLGENLIS 1591
            S +G    +G N IS
Sbjct: 1199 SITGYVFTVGGNTIS 1213



 Score = 32.7 bits (73), Expect = 1.7
 Identities = 27/120 (22%), Positives = 54/120 (44%), Gaps = 4/120 (3%)

Query: 152 FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKDL 211
           F+M++++ I+E    F  +V+ L  L+           +L SLP+R+   V  ++ +   
Sbjct: 100 FKMQENKKIDENIDDFLKIVADLNHLQIDVTDEVQAILLLSSLPARYDGLVETMKYSNSR 159

Query: 212 NTLSVEDLVSSL--KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDG 269
             L ++D++ +   K  E+S N     +   +   P     ++ +K    S S  +S DG
Sbjct: 160 EKLRLDDVMVAARDKERELSQNNRPVVEGHFARGRPDGKNNNQGNKGKNRSRS--KSADG 217


>At1g37110 
          Length = 1356

 Score =  449 bits (1156), Expect = e-126
 Identities = 302/967 (31%), Positives = 493/967 (50%), Gaps = 86/967 (8%)

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 724
            W LDSGC+ HMT  +  F++   K    +  G + + +  G GTI     G +   + NV
Sbjct: 308  WILDSGCTSHMTSRRDWFISFQEKGNTTILLGDDHSVESQGQGTIRIDTHGGTIKILENV 367

Query: 725  WLVDGLKHNLLSISQFCDNEY-------DVTFSKTNCTLVNKDDKSITFKGKRVENVYKI 777
              V  L+ NL+S        Y        V + K N T +         +G     +Y +
Sbjct: 368  KYVPHLRRNLISTGTLDKLGYRHEGGEGKVRYFKNNKTAL---------RGSLSNGLYVL 418

Query: 778  NFSDLADQKVVCLLSMNDKKW-VWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDAL 834
            + S +  +  +C    +  K  +WH RLGH +   +  ++   L+  K +  +++     
Sbjct: 419  DGSTVMSE--LCNAETDKVKTALWHSRLGHMSMNNLKVLAGKGLIDRKEINELEF----- 471

Query: 835  CGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVN-TASLYGSKYGLVIVDDYSRWT 893
            C  C  GK  K SF      S    L  +H DL+G  N T S+ G +Y L I+DD +R  
Sbjct: 472  CEHCVMGKSKKVSFNVGKHTSEDA-LSYVHADLWGSPNVTPSISGKQYFLSIIDDKTRKV 530

Query: 894  WVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFS 953
            W+ F+KSKD   + F  + + ++++   K+  +R+D+G EF N  F+ +C++HGI    +
Sbjct: 531  WLYFLKSKDETFDKFCEWKSLVENQVNKKVKCLRTDNGLEFCNSRFDSYCKEHGIERHRT 590

Query: 954  SPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTA 1013
               TPQQNGV ER NRT+ E  R +++++ + + FWAEA  T+ Y+ NR     +     
Sbjct: 591  CTYTPQQNGVAERMNRTIMEKVRCLLNKSGVEEVFWAEAAATAAYLINRSPASAINHNVP 650

Query: 1014 YELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYN-SET 1072
             E++  R+P   +  +FG   Y+   +  LK    +A +G FLGY   +K Y+V+   E 
Sbjct: 651  EEMWLNRKPGYKHLRKFGSIAYVHQDQGKLKP---RALKGFFLGYPAGTKGYKVWLLEEE 707

Query: 1073 QCV-------EES-----MHVKFDDREPGSK---TSEQSESNAGTTDSEDASESDQPSDS 1117
            +CV       +ES     + VK DD +  ++   TS + E N     S         SDS
Sbjct: 708  KCVISRNVVFQESVVYRDLKVKEDDTDNLNQKETTSSEVEQNKFAEASGSGGVIQLQSDS 767

Query: 1118 EKYTKVESSPEAEITPEAESNSEAESSPIVQNESASEDFQDNTQQVIQP--KFKHKSSHP 1175
            E  T+ E S ++E   E E + + + +P     +  +  +D  ++ I P  +F  +SS  
Sbjct: 768  EPITEGEQSSDSE--EEVEYSEKTQETPKRTGLTTYKLARDRVRRNINPPTRFTEESSVT 825

Query: 1176 EELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTVEEALSD---DGWILAMQEELNQFQ 1232
              L++                E+ I    + EP++ +EA+     + W +A  +E++   
Sbjct: 826  FALVV---------------VENCI----VQEPQSYQEAMESQDCEKWDMATHDEMDSLM 866

Query: 1233 RNDVWDLVPKPFQKNIIETKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGINYTETFAP 1291
            +N  WDLV KP  + II  +W+F+ K    G E TR KARLVA+GY+Q+EG++Y E FAP
Sbjct: 867  KNGTWDLVDKPKDRKIIGCRWLFKLKSGIPGVEPTRFKARLVAKGYTQREGVDYQEIFAP 926

Query: 1292 VARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLK 1351
            V +  +IR+L+S  ++  + L QMDVK+ FL+G +EEE+Y++QP GF      + V +LK
Sbjct: 927  VVKHVSIRILMSLVVDKDLELEQMDVKTTFLHGDLEEELYMEQPEGFVSDSSENKVCRLK 986

Query: 1352 KSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLF-RRTLKKDILIVQIYVDDIIFGST 1410
            KSLYGLKQ+PR W  R   F+    F R + D  ++ +   + D + + +YVDD++    
Sbjct: 987  KSLYGLKQSPRQWNKRFDRFMSSQQFIRSEHDACVYVKHVSEHDFIYLLLYVDDMLIAGA 1046

Query: 1411 NASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLED 1468
            + +      + +  EFEM  MG     LGI I + ++G  + + Q  Y +++L +F +  
Sbjct: 1047 SKAEINRVKEQLSTEFEMKDMGGASRILGIDIYRDRKGGVLKLSQEIYIRKVLDRFNMSG 1106

Query: 1469 CKVMNTPM---HPTCTLSKEDTGTVVDQKLYRGMIGSLLY-LTASRPDILFSVCLCARFQ 1524
             K+ N P+        + +ED     D   Y   +GS++Y +  +RPD+ +++CL +R+ 
Sbjct: 1107 AKMTNAPVGAHFKLAAVREEDECVDTDVVPYSSAVGSIMYAMLGTRPDLAYAICLISRYM 1166

Query: 1525 SDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQF 1584
            S P   H  AVK + RYLKG  +L L++ K  D+ + G+CD++YA D   R+S SG    
Sbjct: 1167 SKPGSMHWEAVKWVMRYLKGAQDLNLVFTKEKDFTVTGYCDSNYAADLDRRRSISGYVFT 1226

Query: 1585 LGENLIS 1591
            +G N +S
Sbjct: 1227 IGGNTVS 1233


>At1g26990 polyprotein, putative
          Length = 1436

 Score =  447 bits (1151), Expect = e-125
 Identities = 314/946 (33%), Positives = 476/946 (50%), Gaps = 78/946 (8%)

Query: 668  RSWYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG-NSSISINNVWL 726
            R+W +DSG S H+T E+ L+ T    D   V+     T KI GTG I    ++S++NV  
Sbjct: 419  RAWVIDSGASHHVTHERNLYHTYKALDRTFVRLPNGHTVKIEGTGFIQLTDALSLHNVLF 478

Query: 727  VDGLKHNLLSISQFCDN-EYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFS-DLAD 784
            +   K NLLS+S      +  V+F+   C +     + +  KG +V N+Y +N    L D
Sbjct: 479  IPEFKFNLLSVSVLTKTLQSKVSFTSDECMIQALTKELMLGKGSQVGNLYILNLDKSLVD 538

Query: 785  Q-----KVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDAL-CGAC 838
                  K VC    N+ + +WHKRLGH ++   +KI  L  V  LP    + D+  C  C
Sbjct: 539  VSSFPGKSVCSSVKNESE-MWHKRLGHPSF---AKIDTLSDVLMLPKQKINKDSSHCHVC 594

Query: 839  QKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVDDYSRWTWVKFI 898
               K     FKS + +   +  EL+HID +GP +  ++   +Y L IVDD+SR TW+  +
Sbjct: 595  HLSKQKHLPFKSVNHIR-EKAFELVHIDTWGPFSVPTVDSYRYFLTIVDDFSRATWIYLL 653

Query: 899  KSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTP 958
            K K     VF SF   ++++   K+  VRSD+  E +    ELF  K GI  +   P TP
Sbjct: 654  KQKSDVLTVFPSFLKMVETQYHTKVCSVRSDNAHELKFN--ELFA-KEGIKADHPCPETP 710

Query: 959  QQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFK 1018
            +QN VVERK++ L  +AR ++ ++ +   +W + V T+ ++ NR+    +  +T YE   
Sbjct: 711  EQNFVVERKHQHLLNVARALMFQSGIPLEYWGDCVLTAVFLINRLLSPVINNETPYERLT 770

Query: 1019 GRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEES 1078
              +P+ S    FGC CY   +     KFD +A+  IFLGY    K Y++ + ET  V  S
Sbjct: 771  KGKPDYSSLKAFGCLCYCSTSPKSRTKFDPRAKACIFLGYPMGYKGYKLLDIETYSVSIS 830

Query: 1079 MHVKF-DDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAES 1137
             HV F +D  P +     S       D         P++ E    V+SS +A    +  S
Sbjct: 831  RHVIFYEDIFPFAS----SNITDAAKDFFPHIYLPAPNNDEHLPLVQSSSDAPHNHDESS 886

Query: 1138 N-----SEAESSPIVQNESASEDFQ--DNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTR 1190
            +     SE +S+   +  S  +DF   +NT     P     S +P    I          
Sbjct: 887  SMIFVPSEPKSTRQRKLPSHLQDFHCYNNT-----PTTTKTSPYPLTNYI---------- 931

Query: 1191 SHFRQEESLIGLLSIIE----PKTVEEALSDDGWILAMQEELNQFQRNDVWDLVPKPFQK 1246
            S+    E     ++II     P+   EA  D  W  AM +E++ F R   W +   P  K
Sbjct: 932  SYSYLSEPFGAFINIITATKLPQKYSEARLDKVWNDAMGKEISAFVRTGTWSICDLPAGK 991

Query: 1247 NIIETKWVFRNKLNEQGEVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAI 1306
              +  KW+   K    G + R+KARLVA+GY+QQEGI++  TF+PVA++ T+++LLS A 
Sbjct: 992  VAVGCKWIITIKFLADGSIERHKARLVAKGYTQQEGIDFFNTFSPVAKMVTVKVLLSLAP 1051

Query: 1307 NHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYD 1366
                 L+Q+D+ +  LNG +EEE+Y+K PPG+ +++             G + +P A   
Sbjct: 1052 KMKWYLHQLDISNALLNGDLEEEIYMKLPPGYSEIQ-------------GQEVSPNA--- 1095

Query: 1367 RLSNFLIKNDFERGQVDTTLFRRTLKKDILIVQIYVDDIIFGSTNASLCKEFSKLMQDEF 1426
                        +   D TLF +      L+V +YVDDI+  ST  +   E +  +   F
Sbjct: 1096 ------------KCHGDHTLFVKAQDGFFLVVLVYVDDILIASTTEAASAELTSQLSSFF 1143

Query: 1427 EMSMMGELKFFLGIQINQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKED 1486
            ++  +GE KFFLGI+I ++ +G+ + Q KY  +LL      DCK  + PM P   LSK D
Sbjct: 1144 QLRDLGEPKFFLGIEIARNADGISLCQRKYVLDLLASSDFSDCKPSSIPMEPNQKLSK-D 1202

Query: 1487 TGTVV-DQKLYRGMIGSLLYLTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGT 1545
            TGT++ D K YR ++G L YL  +RPDI F+V   A++ S P + HL A+ +I RYLKGT
Sbjct: 1203 TGTLLEDGKQYRRILGKLQYLCLTRPDINFAVSKLAQYSSAPTDIHLQALHKILRYLKGT 1262

Query: 1546 TNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
               GL Y    ++ L GF D+D+      R+  +G   F+G +L+S
Sbjct: 1263 IGQGLFYGADTNFDLRGFSDSDWQTCPDTRRCVTGFAIFVGNSLVS 1308


>At3g45520 copia-like polyprotein
          Length = 1363

 Score =  445 bits (1145), Expect = e-125
 Identities = 286/950 (30%), Positives = 485/950 (50%), Gaps = 52/950 (5%)

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 724
            W +D+GC  HMT ++        + GG V+ G     ++ G GT+        ++++ NV
Sbjct: 316  WIMDTGCIYHMTHKREWLEDFDEEAGGSVRMGNKSISRVKGVGTVRIVNDNGLTVTLQNV 375

Query: 725  WLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLAD 784
              +  +  NLLS+  F   +    F   N  L  K    +  +G+R + +Y ++     D
Sbjct: 376  RYIPDMDRNLLSLGTF--EKAGHKFESENGMLRIKSGNQVLLEGRRYDTLYILHGKPATD 433

Query: 785  QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLV--KGLPNIDYHSDALCGACQKGK 842
            + +  +   ND   +WH+RL H + + +S + K   +  K +  +D   D + G  +K  
Sbjct: 434  ESLA-VARANDDTVLWHRRLCHMSQKNMSLLIKKGFLDKKKVSMLDTCEDCIYGRAKK-- 490

Query: 843  IVKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSK 901
             +  +    D   T + LE +H DL+G P    SL   +Y +  +DDY+R  WV F+K+K
Sbjct: 491  -IGFNLAQHD---TKKKLEYVHSDLWGAPTVPMSLGNCQYFISFIDDYTRKVWVYFLKTK 546

Query: 902  DYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQN 961
            D A E F S+ + ++++   ++  +R+D+G EF N  F+ FCE+ G     +   TPQQN
Sbjct: 547  DEAFEKFVSWISLVENQSGERVKTLRTDNGLEFCNRMFDGFCEEKGFQRHRTCAYTPQQN 606

Query: 962  GVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRR 1021
            GVVER NRT+ E  R+M+ ++ L K FWAEA +T+  + N+     +  +   + + G+ 
Sbjct: 607  GVVERMNRTIMEKVRSMLCDSGLPKRFWAEATHTAVLLINKTPCSAINFEFPDKRWSGKA 666

Query: 1022 PNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHV 1081
            P  SY  ++GC  ++        K + +A++G+ +GY    K Y+V+  E +    S +V
Sbjct: 667  PIYSYLRRYGCVTFVHTDGG---KLNLRAKKGVLIGYPSGVKGYKVWLIEEKKCVVSRNV 723

Query: 1082 KFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEA 1141
             F +        ++ E  +   D    S  D   +++K    ++S   E        S+A
Sbjct: 724  SFQENAVYKDLMQRKEQVSCEEDDHAGSYIDLDLEADK----DNSSGGE-------QSQA 772

Query: 1142 ESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFRQEESLIG 1201
            + +P  +    S   +  T  + +    H+S     L+   +    R    F  E+    
Sbjct: 773  QVTPATRGAVTSTPPRYETDDIEETDV-HQSPLSYHLVRDRERREIRAPRRFDDEDYYAE 831

Query: 1202 LL------SIIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETK 1252
             L        +EP   +EA+ D   D W LAM EE+    +ND W  V +P ++ II ++
Sbjct: 832  ALYTTEDGDAVEPADYKEAVRDENWDKWRLAMNEEIESQLKNDTWTTVTRPEKQRIIGSR 891

Query: 1253 WVFRNKLNEQG-EVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGII 1311
            W+++ K    G E  R KARLVA+GY+Q+EG++Y E FAPV +  +IR+LLS      + 
Sbjct: 892  WIYKYKQGIPGVEEPRFKARLVAKGYAQREGVDYHEIFAPVVKHVSIRILLSIVAQENLE 951

Query: 1312 LYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1371
            L Q+DVK+ FL+G ++E++Y+  P G E L   + V  L KSLYGLKQAPR W ++ +++
Sbjct: 952  LEQLDVKTAFLHGELKEKIYMMPPEGCESLFKENEVCLLNKSLYGLKQAPRQWNEKFNHY 1011

Query: 1372 LIKNDFERGQVDTTLFRRTLKKD-ILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSM 1430
            + +  F+R   D+  + + L  D  + +  YVDD++  + N        K +  +FEM  
Sbjct: 1012 MTEIGFKRSDYDSCAYTKKLSDDSTMYLLFYVDDMLVAANNMQAIDALKKELSIKFEMKD 1071

Query: 1431 MGELKFFLGIQINQSKEG--VYVHQTKYTKELLKKFKLEDCKVMNTPM--HPTCTLSKED 1486
            +G  K  LGI+I   +E   +++ Q  Y  ++LK F + + K   TP+  H     + E+
Sbjct: 1072 LGAAKKILGIEIIIDREAGVLWLSQESYLNKVLKTFNMLESKPALTPLGAHLKMKSATEE 1131

Query: 1487 TGTVVDQKL----YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRY 1541
              +  ++ +    Y   +GS++Y +  +RPD+ + V + +RF S P + H   VK + RY
Sbjct: 1132 KLSTEEEYMNSVPYSSAVGSIMYAMIGTRPDLAYPVGVVSRFMSQPAKEHWLGVKWVLRY 1191

Query: 1542 LKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            +KGT +  L Y+++ D+ + G+CDADYA D  +R+S +G    LG N IS
Sbjct: 1192 IKGTVDTRLCYKRNSDFSICGYCDADYAADLDKRRSITGLVFTLGGNTIS 1241



 Score = 57.8 bits (138), Expect = 5e-08
 Identities = 65/316 (20%), Positives = 126/316 (39%), Gaps = 47/316 (14%)

Query: 33  KFNGDPEEFSWWKTNMYSFI--MGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 90
           KF+G  + ++ WK  + + I  +GL   L +   +     + D E +  D +      + 
Sbjct: 10  KFDGRGD-YTMWKEKLLAHIDMLGLSAVLRE--SETPMGKERDSEKSDEDEKEEREKMEA 66

Query: 91  LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYE 150
             +K  K R  IV S+      K+  +++A AM  +L   +  SK +     + L  +  
Sbjct: 67  FEEKKRKARSTIVLSVSDRVLRKIKKETSAAAMLEALDRLYM-SKALPNR--IYLKQKLY 123

Query: 151 LFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEAKD 210
            F+M ++ SIE     F  +V+ L+ L       D    +L SLP  +      ++ +  
Sbjct: 124 SFKMSENLSIEGNIDEFLHIVADLENLNVLVSDEDQAILLLMSLPKPFDQLKDTLKYSSG 183

Query: 211 LNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPDGD 270
              LS++++ +++   E+     + S K ++  L                          
Sbjct: 184 KTVLSLDEVAAAIYSRELEFGSVKKSIKGQAEGL-------------------------- 217

Query: 271 SDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCPDL 330
                      + +K E   R ++K    +G  K SK + ++GC+ C + GH  + CP+ 
Sbjct: 218 ----------YVKDKAENRGRSEQK---DKGKGKRSKSKSKRGCWICGEDGHLKSTCPNK 264

Query: 331 QKEKFKGKSKKSSFNS 346
            K +FK +      +S
Sbjct: 265 NKPQFKNQGSNKGESS 280


>At2g07550 putative retroelement pol polyprotein
          Length = 1356

 Score =  441 bits (1135), Expect = e-123
 Identities = 299/955 (31%), Positives = 486/955 (50%), Gaps = 62/955 (6%)

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTIG--NS---SISINNV 724
            W LD+GCS HMT ++  F       GG V+ G     ++ G GTI   NS   +I + NV
Sbjct: 309  WILDTGCSYHMTYKREWFHEFNEDAGGSVRMGNKTVSRVRGVGTIRVKNSDGLTIVLTNV 368

Query: 725  WLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLAD 784
              +  +  NLLS+  F    Y   F   +  L  K    +   G+R + +Y +N+  +A 
Sbjct: 369  RYIPDMDRNLLSLGTFEKAGYK--FESEDGILRIKAGNQVLLTGRRYDTLYLLNWKPVAS 426

Query: 785  QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKG-LPNIDYHSDALCGACQKGKI 843
            + +  +   +D   +WH+RL H +     K  ++ + KG L      S  +C  C  GK 
Sbjct: 427  ESLAVVKRADDTV-LWHQRLCHMS----QKNMEILVRKGFLDKKKVSSLDVCEDCIYGKA 481

Query: 844  VKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 902
             + SF S     T   LE +H DL+G P    SL   +Y + I+DD++R  WV F+K+KD
Sbjct: 482  KRKSF-SLAHHDTKEKLEYIHSDLWGAPFVPLSLGKCQYFMSIIDDFTRKVWVYFMKTKD 540

Query: 903  YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 962
             A E F  +   ++++ + ++  +R+D+G EF N+ F+ FCE  GI    +   TPQQNG
Sbjct: 541  EAFEKFVEWVNLVENQTDRRVKTLRTDNGLEFCNKLFDGFCESIGIHRHRTCAYTPQQNG 600

Query: 963  VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRP 1022
            V ER NRT+ E  R+M+ ++ L K FWAEA +T+  + N+     +  +   + + G  P
Sbjct: 601  VAERMNRTIMEKVRSMLSDSGLPKRFWAEATHTTVLLINKTPSSALNFEIPDKKWSGNPP 660

Query: 1023 NISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVK 1082
              SY  ++GC  ++ +T D   K + +A++G+ +GY    K Y+V+  + +    S ++ 
Sbjct: 661  VYSYLRRYGCVAFV-HTDD--GKLEPRAKKGVLIGYPVGVKGYKVWILDERKCVVSRNII 717

Query: 1083 FDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEITPEAESNSEAE 1142
            F +        ++ E+ +  T+ +D + S    D E    V S  + E+     +   A 
Sbjct: 718  FQENAVYKDLMQRQENVS--TEEDDQTGSYLEFDLEAERDVISGGDQEMV----NTIPAP 771

Query: 1143 SSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKD-----SPRRTRSHFRQEE 1197
             SP+V   +  +   D    V Q    +        ++  +D     +PRR        E
Sbjct: 772  ESPVVSTPTTQDTNDDEDSDVNQSPLSYH-------LVRDRDKREIRAPRRFDDEDYYAE 824

Query: 1198 SLIGLLS--IIEPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETK 1252
            +L        +EP+   +A  D   D W LAM EE++  ++N+ W +V +P  + II  +
Sbjct: 825  ALYTTEDGEAVEPENYRKAKLDANFDKWKLAMDEEIDSQEKNNTWTIVTRPENQRIIGCR 884

Query: 1253 WVFRNKLNEQG-EVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGII 1311
            W+F+ KL   G E  R KARLVA+GY+Q+EGI+Y E FAPV +  +IR+LLS      + 
Sbjct: 885  WIFKYKLGILGVEEPRFKARLVAKGYAQKEGIDYHEIFAPVVKHVSIRVLLSIVAQEDLE 944

Query: 1312 LYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNF 1371
            L Q+DVK+ FL+G ++E++Y+  P G+E +   + V  L K+LYGLKQAP+ W ++  NF
Sbjct: 945  LEQLDVKTAFLHGELKEKIYMSPPEGYESMFKANEVCLLNKALYGLKQAPKQWNEKFDNF 1004

Query: 1372 LIKNDFERGQVDTTLFRRTLKK-DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSM 1430
            + +  F +   D+  + + L    ++ + IYVDDI+  S N          +   FEM  
Sbjct: 1005 MKEICFVKSAYDSCAYTKVLPDGSVMYLLIYVDDILVASKNKEAITALKANLGMRFEMKD 1064

Query: 1431 MGELKFFLGIQINQSKE-GV-YVHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTG 1488
            +G  K  LG++I + +  GV ++ Q  Y  ++L+ + + + K   TP+            
Sbjct: 1065 LGAAKKILGMEIIRDRTLGVLWLSQEGYLNKILETYNMAEAKPAMTPLGAHFKFQ----- 1119

Query: 1489 TVVDQKL-----------YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVK 1536
               +QKL           Y   +GS++Y +  +RPD+ + V + +RF S P + H   VK
Sbjct: 1120 AATEQKLIRDEDFMKSVPYSSAVGSIMYAMLGTRPDLAYPVGIISRFMSQPIKEHWLGVK 1179

Query: 1537 RIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
             + RY+KGT    L Y+KS  + ++G+CDADYA D  +R+S +G    LG N IS
Sbjct: 1180 WVLRYIKGTLKTRLCYKKSSSFSIVGYCDADYAADLDKRRSITGLVFTLGGNTIS 1234



 Score = 59.3 bits (142), Expect = 2e-08
 Identities = 62/308 (20%), Positives = 123/308 (39%), Gaps = 51/308 (16%)

Query: 33  KFNGDPEEFSWWKTNMYSF--IMGLDEELWDILEDGVDDLDLDEEGAAIDRRIHTPAQKK 90
           KF+G  + ++ WK  + +   I+GL+  L +    G     LDE     + ++     + 
Sbjct: 10  KFDGRGD-YTMWKEKLLAHMDILGLNTALKESESTGEKKSVLDESDEDYEEKLEK--FEA 66

Query: 91  LYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQYE 150
           L +K  K R  IV S+      K+  +STA AM  +L   +     + +A    +  + +
Sbjct: 67  LEEKKKKARSAIVLSVTDRVLRKIKKESTAAAMLLALDKLY-----MSKALPNRIYPKQK 121

Query: 151 L--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIEEA 208
           L  F+M ++ S+E     F  +++ L+ +       D    +L +LP  +      ++ +
Sbjct: 122 LYSFKMSENLSVEGNIDEFLQIITDLENMNVIISDEDQAILLLTALPKAFDQLKDTLKYS 181

Query: 209 KDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKTSKSSKAYKASESEEESPD 268
              + L+++++ +++   E+ L   + S K ++  L  K K     K  +          
Sbjct: 182 SGKSILTLDEVAAAIYSKELELGSVKKSIKVQAEGLYVKDKNENKGKGEQKG-------- 233

Query: 269 GDSDEDQSVKMAMLSNKLEYLARKQKKFLSKRGSYKNSKKEDQKGCFNCKKPGHFIADCP 328
                                          +G  K  K + + GC+ C + GHF + CP
Sbjct: 234 -------------------------------KGKGKKGKSKKKPGCWTCGEEGHFRSSCP 262

Query: 329 DLQKEKFK 336
           +  K +FK
Sbjct: 263 NQNKPQFK 270


>At5g35820 copia-like retrotransposable element
          Length = 1342

 Score =  436 bits (1120), Expect = e-122
 Identities = 299/999 (29%), Positives = 502/999 (49%), Gaps = 80/999 (8%)

Query: 626  QKNKAATASEKTIPKGVKPKVLNDQKPLSIHPKVCLRAREKQRSWYLDSGCSRHMTGEKA 685
            ++NK  + SE+     V  +V  D   L +   +   A     +W LD+GCS HMT  K 
Sbjct: 269  ERNKQGSTSERGEASTVTARV-TDAAALVVSRALLGFAEVTPDTWILDTGCSFHMTCRKD 327

Query: 686  LFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNVWLVDGLKHNLLSISQF 740
              +       G+V+ G +   ++ G G +       S+I + +V  +  +  NL+S+   
Sbjct: 328  WIIDFKETASGKVRMGNDTYSEVKGIGDVRIKNEDGSTILLTDVRYIPEMSKNLISLGTL 387

Query: 741  CDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLADQKVVCLLSMNDKKWVW 800
             D        K   T+   D   +T  GK+   +Y +  + LA +  V +    D+  +W
Sbjct: 388  EDKGCWFESKKGILTIFKNDLTVLT--GKKESTLYFLQGTTLAGEANV-IDKEKDETSLW 444

Query: 801  HKRLGHANWRLISKISKLQLVKGLPNIDYHSDALCGACQKGKIVKSSFKSKDIVSTSRPL 860
            H RLGH   +       LQ++    ++D             K +  SF +   V+  + L
Sbjct: 445  HSRLGHIGAK------GLQVLVSKGHLD-------------KNIMISFGAAKHVTKDK-L 484

Query: 861  ELLHIDLFGPVNTASLYGS-KYGLVIVDDYSRWTWVKFIKSKDYACEVFSSFCTQIQSEK 919
            + +H DL+G  N     G  +Y +  +DD++R TW+ FI++KD A   F  + TQI++++
Sbjct: 485  DYVHSDLWGSTNVPFSIGKCQYFITFIDDFTRRTWIYFIRTKDEAFSKFVEWKTQIENQQ 544

Query: 920  ELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNGVVERKNRTLQEMARTMI 979
            + K+  + +D+G EF N+ F+ FC K G++   +   TPQQNGV ER NRT+    R M+
Sbjct: 545  DKKLKILITDNGLEFCNQEFDSFCRKEGVIRHRTCAYTPQQNGVAERMNRTIMNKVRCML 604

Query: 980  HENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRPNISYFHQFGCTCYILNT 1039
             E+ L K FWAEA +T+ ++ N+     +      E + G  P+     +FG   YI + 
Sbjct: 605  SESGLGKQFWAEAASTAVFLINKSPSSSIEFDIPEEKWTGHPPDYKILKKFGSVAYIHSD 664

Query: 1040 KDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVKFDDREPGSKTSEQSESN 1099
            +    K + +A++GIFLGY +  K ++V+  E +    S  + F + +   +  +     
Sbjct: 665  QG---KLNPRAKKGIFLGYPDGVKRFKVWLLEDRKCVVSRDIVFQENQMYKELQKN---- 717

Query: 1100 AGTTDSEDASESDQPSDSEKYTKVES---SPEAEITPEAESNSEAESSPIVQNESASEDF 1156
                   D SE D+     + T +E    S + E   E   NS  E +   ++ S  +  
Sbjct: 718  -------DMSEEDKQLTEVERTLIELKNLSADDENQSEGGDNSNQEQASTTRSASKDKQV 770

Query: 1157 QDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRTRSHFR---QEESLIGLL-------SII 1206
            ++                 E  ++      R+ R+  R   +++SL+G          + 
Sbjct: 771  EETDSD---------DDCLENYLLARDRIRRQIRAPQRFVEEDDSLVGFALTMTEDGEVY 821

Query: 1207 EPKTVEEALSD---DGWILAMQEELNQFQRNDVWDLVPKPFQKNIIETKWVFRNKLNEQG 1263
            EP+T EEA+     + W  A  EE++  ++ND WD++ KP  K +I  KW+F+ K    G
Sbjct: 822  EPETYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPG 881

Query: 1264 -EVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFL 1322
             E  R KARLVA+G+SQ+EGI+Y E F+PV +  +IR LLS  +   + L Q+DVK+ FL
Sbjct: 882  VEPPRYKARLVAKGFSQREGIDYQEIFSPVVKHVSIRYLLSIVVQFDMELEQLDVKTAFL 941

Query: 1323 NGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQV 1382
            +G ++E + + QP G+ED    + V  LKKSLYGLKQ+PR W  R  +F+I + ++R + 
Sbjct: 942  HGNLDEYILMSQPEGYEDEDSTEKVCLLKKSLYGLKQSPRQWNQRFDSFMINSGYQRSKY 1001

Query: 1383 DTTLFRRTLKK-DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQ 1441
            +  ++ + L     + + +YVDD++  S N    ++  + +  EFEM  +G  +  LG++
Sbjct: 1002 NPCVYTQQLNDGSYIYLLLYVDDMLIASQNKDQIQKLKESLNREFEMKDLGPARKILGME 1061

Query: 1442 INQSKE-GVY-VHQTKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVD----QKL 1495
            I +++E G+  + Q++Y   +L+ F ++  KV  TP+     L   +  T+       KL
Sbjct: 1062 ITRNREQGILDLSQSEYVAGVLRAFGMDQSKVSQTPLGAHFKLRAANEKTLARDAEYMKL 1121

Query: 1496 --YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLY 1552
              Y   IGS++Y +  SRPD+ + V + +RF S P + H  AVK + RY+KGT +  L +
Sbjct: 1122 VPYPNAIGSIMYSMIGSRPDLAYPVGVVSRFMSKPSKEHWQAVKWVMRYMKGTQDTCLRF 1181

Query: 1553 RKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            +K   +++ G+CD+DYA D   R+S +G     G N IS
Sbjct: 1182 KKDDKFEIRGYCDSDYATDLDRRRSITGFVFTAGGNTIS 1220



 Score = 51.6 bits (122), Expect = 4e-06
 Identities = 57/250 (22%), Positives = 104/250 (40%), Gaps = 19/250 (7%)

Query: 28  SGKAP--KFNGDPEEFSWWKT-----NMYSFIMGLDEELWDILEDGVDDLDLDEEGAAID 80
           SG+A   KF+GD +   W +       M   + GL EE   ++ED   ++    +G   D
Sbjct: 3   SGRAEVEKFDGDGDYILWKEKLLAHMEMLGLLEGLGEEEEAVVEDSTTEIS---DGGNQD 59

Query: 81  RRIHTPA--QKKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVK 138
               T     K L +K  K R  I+ S+      K+  + TA  M   L   F       
Sbjct: 60  PETATSKLEDKILKEKRGKARSTIILSLGNNVLRKVIKQKTAAGMIKVLDQLFMAKSLPN 119

Query: 139 EAKALMLVHQYELFRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRW 198
                  ++ Y   +M ++ ++EE  + F  L+S L+ +K      D    +L SLP ++
Sbjct: 120 RIYLKQRLYGY---KMSENMTMEENVNDFFKLISDLENVKVVVPDEDQAIVLLMSLPRQF 176

Query: 199 RPKVTAIEEAKDLNTLSVEDLVSSL--KVHEMSLNEHETSKKSKSIALPSKGKTSKSSKA 256
                 ++  K   TL +E++ S++  K+ E+  +       S  + +  +G++    K 
Sbjct: 177 DQLKETLKYCK--TTLHLEEITSAIRSKILELGASGKLLKNNSDGLFVQDRGRSETRGKG 234

Query: 257 YKASESEEES 266
              ++S  +S
Sbjct: 235 PNKNKSRSKS 244


>At2g16670 putative retroelement pol polyprotein
          Length = 1333

 Score =  429 bits (1103), Expect = e-120
 Identities = 285/918 (31%), Positives = 458/918 (49%), Gaps = 52/918 (5%)

Query: 710  GTGTIGNSSISINNVWLVDGLKHNLLSISQFCD-NEYDVTFSKTNCTLVNKDDKSITFKG 768
            GT  +G++ + I+ V+ V+  + +L+SI Q  D N   +  S     + ++  + +   G
Sbjct: 305  GTVRLGSNLVMIS-VFYVEEFQSDLISIGQLMDENRCVLQMSDRFLVVQDRTSRMVMGAG 363

Query: 769  KRVENVYKINFSDLADQKVVCLLSMNDKKW-VWHKRLGHANWRLISKISKLQLVKGLPNI 827
            +RV   +    +++A    V      +K + +WH R+GH   R++S I +  +       
Sbjct: 364  RRVGGTFHFRSTEIAASVTV----KEEKNYELWHSRMGHPAARVVSLIPESSVSVS---- 415

Query: 828  DYHSDALCGACQKGKIVKSSFKSKDIVSTSRPLELLHIDLFGPVNTASLYGSKYGLVIVD 887
              H +  C  C + K  ++SF    I  T R  EL++ DL+GP  T S  G++Y L I+D
Sbjct: 416  STHLNKACDVCHRAKQTRNSFPLS-INKTLRIFELIYCDLWGPYRTPSHTGARYFLTIID 474

Query: 888  DYSRWTWVKFIKSKDYACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHG 947
            DYSR  W+  +  K  A     +F      +  +KI  VRSD+G EF       F ++ G
Sbjct: 475  DYSRGVWLYLLNDKSEAPCHLKNFFAMTDRQFNVKIKTVRSDNGTEFLC--LTKFFQEQG 532

Query: 948  ILHEFSSPRTPQQNGVVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRP 1007
            ++HE S   TP++N  VERK+R L  +AR +  + NL   FW E V T+ Y+ NR     
Sbjct: 533  VIHERSCVATPERNDRVERKHRHLLNVARALRFQANLPIQFWGECVLTAAYLINRTPSSV 592

Query: 1008 MLEKTAYELFKGRRPNISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRV 1067
            + + T YE    ++P   +   FG  CY  N      KF  +++R +F+GY    K +R+
Sbjct: 593  LNDSTPYERLHKKQPRFDHLRVFGSLCYAHNRNRGGDKFAERSRRCVFVGYPHGQKGWRL 652

Query: 1068 YNSETQCVEESMHVKFDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSP 1127
            ++ E      S  V F + E   + S +        ++  A   D   + E +    + P
Sbjct: 653  FDLEQNEFFVSRDVVFSELEFPFRISHEQNVIEEEEEALWAPIVDGLIEEEVHLGQNAGP 712

Query: 1128 ------EAEITPEAESN-----------SEAESSPIVQNESASEDFQDNTQQVIQPKFKH 1170
                   + I+P A S+           +E   +P     SAS        Q + P  + 
Sbjct: 713  TPPICVSSPISPSATSSRSEHSTSSPLDTEVVPTPATSTTSASSPSSPTNLQFL-PLSRA 771

Query: 1171 KSSHPEELIIGSKDSPRRTRSHFRQEESLIGLLSIIEPKTV-EEALSDDGWILAMQEELN 1229
            K +  + +   +   PRR  +  R +   + L   +   TV +E+ S    IL   ++ +
Sbjct: 772  KPTTAQAVAPPAVPPPRRQST--RNKAPPVTLKDFVVNTTVCQESPSKLNSILYQLQKRD 829

Query: 1230 QFQR----------------NDVWDLVPKPFQKNIIETKWVFRNKLNEQGEVTRNKARLV 1273
              +R                N  W +   P  K  I ++WV++ K N  G V R KARLV
Sbjct: 830  DTRRFSASHTTYVAIDAQEENHTWTIEDLPPGKRAIGSQWVYKVKHNSDGSVERYKARLV 889

Query: 1274 AQGYSQQEGINYTETFAPVARLETIRLLLSYAINHGIILYQMDVKSVFLNGVIEEEVYVK 1333
            A G  Q+EG +Y ETFAPVA++ T+RL L  A+     ++QMDV + FL+G + EEVY+K
Sbjct: 890  ALGNKQKEGEDYGETFAPVAKMATVRLFLDVAVKRNWEIHQMDVHNAFLHGDLREEVYMK 949

Query: 1334 QPPGFEDLKHPDHVYKLKKSLYGLKQAPRAWYDRLSNFLIKNDFERGQVDTTLFRRTLKK 1393
             PPGFE   HP+ V +L+K+LYGLKQAPR W+++L+  L +  F++   D +LF      
Sbjct: 950  LPPGFE-ASHPNKVCRLRKALYGLKQAPRCWFEKLTTALKRYGFQQSLADYSLFTLVKGS 1008

Query: 1394 DILIVQIYVDDIIFGSTNASLCKEFSKLMQDEFEMSMMGELKFFLGIQINQSKEGVYVHQ 1453
              + + IYVDD+I    +    ++F + +   F M  +G LK+FLGI++ +S  G+Y+ Q
Sbjct: 1009 VRIKILIYVDDLIITGNSQRATQQFKEYLASCFHMKDLGPLKYFLGIEVARSTTGIYICQ 1068

Query: 1454 TKYTKELLKKFKLEDCKVMNTPMHPTCTLSKEDTGTVVDQKLYRGMIGSLLYLTASRPDI 1513
             KY  +++ +  L   K  N P+     L    +  + D + YR ++G L+YL  +R D+
Sbjct: 1069 RKYALDIISETGLLGVKPANFPLEQNHKLGLSTSPLLTDPQRYRRLVGRLIYLAVTRLDL 1128

Query: 1514 LFSVCLCARFQSDPRESHLTAVKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRI 1573
             FSV + ARF  +PRE H  A  R+ RYLK     G+  R+S D+++ G+CD+D+AGD +
Sbjct: 1129 AFSVHILARFMQEPREDHWAAALRVVRYLKADPGQGVFLRRSGDFQITGWCDSDWAGDPM 1188

Query: 1574 ERKSTSGNCQFLGENLIS 1591
             R+S +G     G++ IS
Sbjct: 1189 SRRSVTGYFVQFGDSPIS 1206


>At2g21460 putative retroelement pol polyprotein
          Length = 1333

 Score =  425 bits (1092), Expect = e-118
 Identities = 291/957 (30%), Positives = 488/957 (50%), Gaps = 67/957 (7%)

Query: 670  WYLDSGCSRHMTGEKALFLTLTMKDGGEVKFGGNQTGKIIGTGTI-----GNSSISINNV 724
            W +D+GCS HMT ++  F  L    GG V+ G     K+ G GTI         + + NV
Sbjct: 287  WVMDTGCSYHMTYKREWFEDLNEDAGGSVRMGNKTVSKVRGIGTIRVKNEAGMVVRLTNV 346

Query: 725  WLVDGLKHNLLSISQFCDNEYDVTFSKTNCTLVNKDDKSITFKGKRVENVYKINFSDLAD 784
              +  +  NLLS+  F  + Y  +F   N TL      S+    +R   +Y + +  + +
Sbjct: 347  RYIPEMDRNLLSLGTFEKSGY--SFKLENGTLSIIAGDSVLLTVRRCYTLYLLQWRPVTE 404

Query: 785  QKVVCLLSMNDKKWVWHKRLGHANWRLISKISKLQLVKGLPNIDYHSDA-LCGACQKGKI 843
            + +  ++   D   +WH+RLGH +     K   L L KGL +    S    C  C  GK 
Sbjct: 405  ESL-SVVKRQDDTILWHRRLGHMS----QKNMDLLLKKGLLDKKKVSKLETCEDCIYGKA 459

Query: 844  VKSSFKSKDIVSTSRPLELLHIDLFG-PVNTASLYGSKYGLVIVDDYSRWTWVKFIKSKD 902
             +  F       T   LE +H DL+G P    SL   +Y +  +DDY+R   + F+K+KD
Sbjct: 460  KRIGFNLAQH-DTREKLEYVHSDLWGAPSVPFSLGKCQYFISFIDDYTRKVRIYFLKTKD 518

Query: 903  YACEVFSSFCTQIQSEKELKILKVRSDHGGEFENEPFELFCEKHGILHEFSSPRTPQQNG 962
             A + F  +   ++++ + +I  +R+D+G EF N  F+ FC + GIL   +   TPQQNG
Sbjct: 519  EAFDKFVEWANLVENQTDKRIKTLRTDNGLEFCNRSFDEFCSQKGILWHRTCAYTPQQNG 578

Query: 963  VVERKNRTLQEMARTMIHENNLAKHFWAEAVNTSCYIQNRIYIRPMLEKTAYELFKGRRP 1022
            V ER NRTL E  R+M+ ++ L K FWAEA +T+  + N+     +  +   + + G+ P
Sbjct: 579  VAERMNRTLMEKVRSMLSDSGLPKKFWAEATHTTAILINKTPSSALNYEVPDKRWSGKSP 638

Query: 1023 NISYFHQFGCTCYILNTKDYLKKFDAKAQRGIFLGYSERSKAYRVYNSETQCVEESMHVK 1082
              SY  +FGC  ++ +T D   K + +A++GI +GY    K Y+++  E +    S +V 
Sbjct: 639  IYSYLRRFGCIAFV-HTDD--GKLNPRAKKGILVGYPIGVKGYKIWLLEEKKCVVSRNVI 695

Query: 1083 FDDREPGSKTSEQSESNAGTTDSEDASESDQPSDSEKYTKVESSPEAEIT-----PEAES 1137
            F          +++ S      S+DA + +  +    Y  ++   E  IT     P  E+
Sbjct: 696  F----------QENASYKDMMQSKDAEKDENEAPPSSYLDLDLDHEEVITSGGDDPIVEA 745

Query: 1138 NSEAESSPIVQNESASEDFQDNTQQVIQPKFKHKSSHPEELIIGSKDSPRRT---RSHFR 1194
             S    SP    ++ SE     T  +IQ    +      +L+   +D  RRT      F 
Sbjct: 746  QSPFNPSP-ATTQTYSEGVNSET-DIIQSPLSY------QLV---RDRDRRTIRAPVRFD 794

Query: 1195 QEESLIGLL------SIIEPKTVEEA---LSDDGWILAMQEELNQFQRNDVWDLVPKPFQ 1245
             E+ L   L        IEP    EA   ++ + W LAM EE+    +N  W +V +P  
Sbjct: 795  DEDYLAEALYTTEDSGEIEPADYSEAKRSMNWNKWKLAMNEEMESQIKNHTWTVVKRPQH 854

Query: 1246 KNIIETKWVFRNKLNEQG-EVTRNKARLVAQGYSQQEGINYTETFAPVARLETIRLLLSY 1304
            + +I ++W+++ KL   G E  R KARLVA+GY+Q++GI+Y E FAPV +  +IR+L+S 
Sbjct: 855  QKVIGSRWIYKFKLGIPGVEEGRFKARLVAKGYAQRKGIDYHEIFAPVVKHVSIRILMSI 914

Query: 1305 AINHGIILYQMDVKSVFLNGVIEEEVYVKQPPGFEDLKHPDHVYKLKKSLYGLKQAPRAW 1364
                 + L Q+DVK+ FL+G ++E++Y+  P G+E++   D V  L KSLYGLKQAP+ W
Sbjct: 915  VAQEDLELEQLDVKTAFLHGELKEKIYMVPPEGYEEMFKEDEVCLLNKSLYGLKQAPKQW 974

Query: 1365 YDRLSNFLIKNDFERGQVDTTLFRRTLKKDILI-VQIYVDDIIFGSTNASLCKEFSKLMQ 1423
             ++ + ++ +  F R   D+  + + L     + + +YVDD++  + N     +  + + 
Sbjct: 975  NEKFNAYMSEIGFIRSLYDSCAYIKELSDGSRVYLLLYVDDMLVAAKNKEDISQLKEELS 1034

Query: 1424 DEFEMSMMGELKFFLGIQI--NQSKEGVYVHQTKYTKELLKKFKLEDCKVMNTPMHP--- 1478
              F+M  +G  K  LG++I  N+ +  +++ Q  Y  ++L+ + + + K + TP+     
Sbjct: 1035 QRFDMKDLGAAKRILGMEIIRNREENTLWLSQNGYLNKILETYNMAESKHVVTPLGAHLK 1094

Query: 1479 --TCTLSKEDTGTVVDQKL-YRGMIGSLLY-LTASRPDILFSVCLCARFQSDPRESHLTA 1534
                T+ K++      + + Y   +GS++Y +  +RPD+ + V + +R+ S P   H   
Sbjct: 1095 MRAATVEKQEQDEDYMKSIPYSSAVGSIMYAMIGTRPDLAYPVGIISRYMSQPAREHWLG 1154

Query: 1535 VKRIFRYLKGTTNLGLLYRKSLDYKLIGFCDADYAGDRIERKSTSGNCQFLGENLIS 1591
            VK + RY+KG+    L Y++S D+K++G+CDAD+A  +  R+S +G    LG + IS
Sbjct: 1155 VKWVLRYIKGSLGTKLQYKRSSDFKVVGYCDADHAACKDRRRSITGLVFTLGGSTIS 1211



 Score = 46.6 bits (109), Expect = 1e-04
 Identities = 53/224 (23%), Positives = 101/224 (44%), Gaps = 16/224 (7%)

Query: 33  KFNGDPEEFSWWKTNMYSF--IMGLDEELW--DILEDGVDDLDLDEEGAAIDRRIHTPAQ 88
           KF+G  + ++ WK  + +   I+GL   L   D L + V ++ L EE    + +     +
Sbjct: 10  KFDGRGD-YTMWKEKLMAHLDILGLSVALKEEDDLVEKVAEMQLTEE----EEKEEVLRR 64

Query: 89  KKLYKKHHKIRGIIVASIPRTEYMKMSDKSTAKAMFASLCANFEGSKNVKEAKALMLVHQ 148
           + L +K  K R  IV S+      K+  + +A AM   L   +     + +A    +  +
Sbjct: 65  ELLEEKRRKARSAIVLSVTDRVLRKIKKEQSAAAMLGVLDKLY-----MSKALPNRIYQK 119

Query: 149 YEL--FRMKDDESIEEMYSRFQTLVSGLQILKKSYVASDHVSKILRSLPSRWRPKVTAIE 206
            +L  F+M ++ SIE     F  +++ L+         D    +L SLP  +      ++
Sbjct: 120 QKLYSFKMSENLSIEGNIDEFLRIIADLENTNVLVSDEDQAILLLMSLPKPFDQLRDTLK 179

Query: 207 EAKDLNTLSVEDLVSSLKVHEMSLNEHETSKKSKSIALPSKGKT 250
                 TLS++++V+++   E+ L  ++ S K ++  L  K KT
Sbjct: 180 YGLGRVTLSLDEVVAAIYSKELELGSNKKSIKGQAEGLFVKEKT 223


  Database: ara_mips
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,978,382
  Number of sequences in database:  6832
  
  Database: /data/blast2/ara_mips_chr2
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,737,135
  Number of sequences in database:  4184
  
  Database: /data/blast2/ara_mips_chr3
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,236,886
  Number of sequences in database:  5377
  
  Database: /data/blast2/ara_mips_chr4
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 1,748,816
  Number of sequences in database:  4030
  
  Database: /data/blast2/ara_mips_chr5
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 2,569,679
  Number of sequences in database:  6098
  
  Database: /data/blast2/ara_mips_chl
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 25,951
  Number of sequences in database:  85
  
  Database: /data/blast2/ara_mips_mit
    Posted date:  Jul 15, 2004 10:29 AM
  Number of letters in database: 21,747
  Number of sequences in database:  113
  
Lambda     K      H
   0.314    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,387,776
Number of Sequences: 26719
Number of extensions: 1665199
Number of successful extensions: 7880
Number of sequences better than 10.0: 411
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 244
Number of HSP's that attempted gapping in prelim test: 6299
Number of HSP's gapped (non-prelim): 1248
length of query: 1591
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1478
effective length of database: 8,299,349
effective search space: 12266437822
effective search space used: 12266437822
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 67 (30.4 bits)