BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC137509.6 - phase: 0 /pseudo
(85 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g10780 pseudogene 89 3e-19
At2g07660 putative retroelement pol polyprotein 89 4e-19
At4g16910 retrotransposon like protein 88 7e-19
At2g06470 putative retroelement pol polyprotein 87 1e-18
At4g03840 putative transposon protein 86 2e-18
At3g31970 hypothetical protein 84 1e-17
At2g14650 putative retroelement pol polyprotein 82 4e-17
At2g04670 putative retroelement pol polyprotein 82 5e-17
At4g10580 putative reverse-transcriptase -like protein 80 2e-16
At3g29490 hypothetical protein 74 1e-14
At3g31480 hypothetical protein 65 6e-12
At3g11970 hypothetical protein 59 4e-10
At1g36590 hypothetical protein 59 4e-10
At2g05610 putative retroelement pol polyprotein 53 3e-08
At2g14640 putative retroelement pol polyprotein 49 4e-07
At1g36120 putative reverse transcriptase gb|AAD22339.1 48 1e-06
At4g07830 putative reverse transcriptase 44 2e-05
At1g35370 hypothetical protein 41 1e-04
At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein 35 0.005
At4g08100 putative polyprotein 33 0.025
>At2g10780 pseudogene
Length = 1611
Score = 89.4 bits (220), Expect = 3e-19
Identities = 41/80 (51%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +Q RQKSY +KRRK++E+QVGD V+L+ G GR +K +P +VGP+ VIE+V
Sbjct: 1423 LKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERV 1482
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPP L+ H+VF
Sbjct: 1483 GAVAYKLDLPPKLNAFHNVF 1502
>At2g07660 putative retroelement pol polyprotein
Length = 949
Score = 89.0 bits (219), Expect = 4e-19
Identities = 41/80 (51%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +Q RQKSY +KRRK++E+QVGD V+L+ G GR +K +P +VGP+ VIE+V
Sbjct: 815 LKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERV 874
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPP L+ H+VF
Sbjct: 875 GAVAYKLDLPPKLNVFHNVF 894
>At4g16910 retrotransposon like protein
Length = 687
Score = 88.2 bits (217), Expect = 7e-19
Identities = 41/80 (51%), Positives = 56/80 (69%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +Q RQKSY +KRRK++E+QVGD V+L+ G GR +K P +VGP+ VIE+V
Sbjct: 507 LKEAQDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLRPRYVGPYKVIERV 566
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPP L H+VF
Sbjct: 567 GAVAYKLDLPPKLDAFHNVF 586
>At2g06470 putative retroelement pol polyprotein
Length = 899
Score = 87.4 bits (215), Expect = 1e-18
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K + RQKSY +KRRK++E+QVGD V+L+ G GR +K +P +VGP+ VIE+V
Sbjct: 782 LKEAHDRQKSYANKRRKELEFQVGDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERV 841
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPP L+ H+VF
Sbjct: 842 GAVAYKLDLPPKLNAFHNVF 861
>At4g03840 putative transposon protein
Length = 973
Score = 86.3 bits (212), Expect = 2e-18
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
+K +Q RQKSY +KRRK++E+QV D V+L+ G GR +K +P +VGP+ VIE+V
Sbjct: 785 LKEAQDRQKSYANKRRKELEFQVEDLVYLKAMTYKGAGRFTSRKKLSPRYVGPYKVIERV 844
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY++ LPP L+ H+VF
Sbjct: 845 GAVAYKLDLPPKLNAFHNVF 864
>At3g31970 hypothetical protein
Length = 1329
Score = 84.0 bits (206), Expect = 1e-17
Identities = 37/80 (46%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q RQ+SY DKRR+++E++VGD V+L++ + G R++ K TP ++GPF ++E+V
Sbjct: 1164 MKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLTPRYMGPFRIVERV 1223
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAYR+ LP + H VF
Sbjct: 1224 GPVAYRLELPDVMRAFHKVF 1243
>At2g14650 putative retroelement pol polyprotein
Length = 1328
Score = 82.4 bits (202), Expect = 4e-17
Identities = 36/80 (45%), Positives = 57/80 (71%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q RQ+SY DKRR+++E++VGD V+L++ + G R++ K +P ++GPF ++E+V
Sbjct: 1166 MKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFRIVERV 1225
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAYR+ LP + H VF
Sbjct: 1226 GPVAYRLELPDVMRAFHKVF 1245
>At2g04670 putative retroelement pol polyprotein
Length = 1411
Score = 82.0 bits (201), Expect = 5e-17
Identities = 36/80 (45%), Positives = 58/80 (72%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q+RQ+SY DKRR+++E++VGD V+L++ + G R++ K +P ++GPF ++E+V
Sbjct: 1246 MKEAQARQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSILETKLSPRYMGPFRIVERV 1305
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAYR+ LP + H VF
Sbjct: 1306 GPVAYRLELPDVMRAFHKVF 1325
>At4g10580 putative reverse-transcriptase -like protein
Length = 1240
Score = 79.7 bits (195), Expect = 2e-16
Identities = 35/80 (43%), Positives = 56/80 (69%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q RQ+SY DKRR+++E++VGD V+L++ + G R++ K +P ++GPF ++E+V
Sbjct: 1075 MKEAQDRQRSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSPRYMGPFKIVERV 1134
Query: 61 GVVAYRIALPPSLSNLHDVF 80
VAYR+ LP + H VF
Sbjct: 1135 EPVAYRLELPDVMRAFHKVF 1154
>At3g29490 hypothetical protein
Length = 438
Score = 74.3 bits (181), Expect = 1e-14
Identities = 34/80 (42%), Positives = 54/80 (67%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q RQ SY DKRR+++E++VGD V+L++ + G R++ K + ++GPF ++E+V
Sbjct: 176 MKEAQDRQWSYADKRRRELEFEVGDRVYLKMAMLRGPNRSISETKLSLRYMGPFRIVERV 235
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAY + LP + H VF
Sbjct: 236 GPVAYMLELPDVMRAFHKVF 255
>At3g31480 hypothetical protein
Length = 338
Score = 65.1 bits (157), Expect = 6e-12
Identities = 28/66 (42%), Positives = 47/66 (70%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK + RQ+SY D RR+++E++VGD V+L+++ + R + K +P ++GPF ++E+V
Sbjct: 143 MKEAHDRQRSYADMRRREVEFEVGDRVYLKMDMLQSPKRFILETKLSPKYMGPFRIVERV 202
Query: 61 GVVAYR 66
G VAYR
Sbjct: 203 GPVAYR 208
>At3g11970 hypothetical protein
Length = 1499
Score = 58.9 bits (141), Expect = 4e-10
Identities = 27/78 (34%), Positives = 51/78 (64%), Gaps = 2/78 (2%)
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGV 62
+Q R K + D+ R + E+++GD+V++++ P ++ +K +P + GP+ +I++ G
Sbjct: 1345 AQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGE 1404
Query: 63 VAYRIALPPSLSNLHDVF 80
VAY++AL PS S +H VF
Sbjct: 1405 VAYKLAL-PSYSQVHPVF 1421
>At1g36590 hypothetical protein
Length = 1499
Score = 58.9 bits (141), Expect = 4e-10
Identities = 27/78 (34%), Positives = 51/78 (64%), Gaps = 2/78 (2%)
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGV 62
+Q R K + D+ R + E+++GD+V++++ P ++ +K +P + GP+ +I++ G
Sbjct: 1345 AQHRMKQFADQHRTEREFEIGDYVYVKLQPYRQQSVVMRANQKLSPKYFGPYKIIDRCGE 1404
Query: 63 VAYRIALPPSLSNLHDVF 80
VAY++AL PS S +H VF
Sbjct: 1405 VAYKLAL-PSYSQVHPVF 1421
>At2g05610 putative retroelement pol polyprotein
Length = 780
Score = 52.8 bits (125), Expect = 3e-08
Identities = 27/78 (34%), Positives = 48/78 (60%), Gaps = 2/78 (2%)
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGV 62
+Q R K D+ + E++VGD+VF+++ P ++ +K +P + GP+ VI++ G
Sbjct: 673 AQHRMKQLADQHITEREFEVGDYVFVKLQPYRQQSVVMRSTQKLSPKYFGPYKVIDRCGE 732
Query: 63 VAYRIALPPSLSNLHDVF 80
VAY++ LP + S +H VF
Sbjct: 733 VAYKLQLPAN-SQVHPVF 749
>At2g14640 putative retroelement pol polyprotein
Length = 945
Score = 48.9 bits (115), Expect = 4e-07
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 9 KSYHDKRRKDIEYQVGDHVFLRVNP---MTGVGRALKCRKSTPCFVGPFDVIEKVGVVAY 65
K D R +D+ +QVGD V LR+ P T R+ +K + F GPF V K G VAY
Sbjct: 786 KQQADSRLRDVSFQVGDWVLLRIQPYRQKTLFRRS--SQKLSHRFYGPFQVASKHGEVAY 843
Query: 66 RIALPPSLSNLHDVF 80
R+ LP + +H VF
Sbjct: 844 RLTLPEG-TRIHPVF 857
>At1g36120 putative reverse transcriptase gb|AAD22339.1
Length = 1235
Score = 47.8 bits (112), Expect = 1e-06
Identities = 26/80 (32%), Positives = 40/80 (49%), Gaps = 29/80 (36%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q RQ+SY DKRR+++E++VG +++E+V
Sbjct: 1099 MKEAQDRQRSYADKRRRELEFEVGT-----------------------------EIVERV 1129
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VAYR+ LP + H+VF
Sbjct: 1130 GPVAYRLELPDVMRAFHNVF 1149
>At4g07830 putative reverse transcriptase
Length = 611
Score = 43.5 bits (101), Expect = 2e-05
Identities = 27/80 (33%), Positives = 41/80 (50%), Gaps = 20/80 (25%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
MK +Q+RQ+SY DKRRK++E++VGD V + G + ++V
Sbjct: 430 MKEAQNRQRSYADKRRKELEFEVGDSV-------SQDGHVARSE-------------QRV 469
Query: 61 GVVAYRIALPPSLSNLHDVF 80
G VA+R+ L + H VF
Sbjct: 470 GPVAFRLELSDVMRAFHKVF 489
>At1g35370 hypothetical protein
Length = 1447
Score = 40.8 bits (94), Expect = 1e-04
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 4 SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKC-RKSTPCFVGPFDVIEKVGV 62
+Q R K + D+ R + + +GD V++++ P L+ +K +P + GP+ +IEK G
Sbjct: 1316 AQHRMKQFADQHRTERTFDIGDFVYVKLQPYRQQSVVLRVNQKLSPKYFGPYKIIEKCGE 1375
Query: 63 V 63
V
Sbjct: 1376 V 1376
>At2g06190 putative Ty3-gypsy-like retroelement pol polyprotein
Length = 280
Score = 35.4 bits (80), Expect = 0.005
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNP---MTGVGRALKCRKSTPCFVGPFDVI 57
++A+ + K DKRR+ ++ GD V + + G +K RK GPF V+
Sbjct: 169 LEATGKKNKVAADKRRRFKVFKEGDDVMVLLRKGRFAVGTYNKVKPRK-----YGPFKVL 223
Query: 58 EKVGVVAYRIALPPSLSNLHDVF 80
K+ AY +ALP S+ N+ + F
Sbjct: 224 RKINDNAYVVALPKSM-NISNTF 245
>At4g08100 putative polyprotein
Length = 1054
Score = 33.1 bits (74), Expect = 0.025
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 1 MKASQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEKV 60
++A + K Y +K RK++ + GD V++ + ++ K P GPF V++++
Sbjct: 899 LEARTKQYKKYANKGRKEVIFNEGDQVWVHLRKKR--FPEVRSSKLMPRIDGPFKVLKRI 956
Query: 61 GVVAYRIAL 69
AY++ L
Sbjct: 957 NNNAYKLDL 965
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.324 0.139 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,862,613
Number of Sequences: 26719
Number of extensions: 63139
Number of successful extensions: 134
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 103
Number of HSP's gapped (non-prelim): 29
length of query: 85
length of database: 11,318,596
effective HSP length: 61
effective length of query: 24
effective length of database: 9,688,737
effective search space: 232529688
effective search space used: 232529688
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)
Medicago: description of AC137509.6