BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC136138.6 - phase: 0 /pseudo
(339 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g24360 unknown protein 30 1.4
At4g07580 30 1.9
At2g17520 endoribonuclease/protein kinase IRE1 (IRE1) 30 2.5
At2g35940 putative homeodomain transcription factor 29 4.2
At1g21960 hypothetical protein 29 4.2
At3g46600 scarecrow-like protein 28 7.2
At5g57610 putative protein 28 9.3
At4g14590 hypothetical protein 28 9.3
>At5g24360 unknown protein
Length = 881
Score = 30.4 bits (67), Expect = 1.4
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 251 HYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSLQL-CMIHDRDNESQRF 300
HY+E PK + EL+ +V + FE Y S F L +Q+ ++ D N + F
Sbjct: 824 HYRELPKELQELLGSVPEGFERY--FSSRFPKLLIQVYTVLFDYCNNEEFF 872
>At4g07580
Length = 323
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 146 KRTSVNRVAGTMETKAITSINR------DLIRSFLIEKVLPATKEVWLRDELGSTIFIQQ 199
K+ SV R + K + +N+ ++++ F++E+ +K V RDE GST ++
Sbjct: 11 KKESVRRGGHVEKNKEVAVVNKYDGDTIEMLKKFIVEQQKKPSKHVEERDETGSTSRGKK 70
Query: 200 DNART 204
RT
Sbjct: 71 KRKRT 75
>At2g17520 endoribonuclease/protein kinase IRE1 (IRE1)
Length = 752
Score = 29.6 bits (65), Expect = 2.5
Identities = 14/47 (29%), Positives = 26/47 (54%), Gaps = 1/47 (2%)
Query: 251 HYKEAPKTIDELVNAVVKSFENYCVVKSNFIFLSL-QLCMIHDRDNE 296
H++E P I ELV V + F+ Y V+ + + + ++ +H R+ E
Sbjct: 695 HHRELPPEIQELVGTVPEGFDEYFAVRFPKLLIEVYRVISLHCREEE 741
>At2g35940 putative homeodomain transcription factor
Length = 680
Score = 28.9 bits (63), Expect = 4.2
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 191 LGSTIFIQQDNARTHINPNDPEFIQAATQDGFDIRLMCQPPNSPDFNVLDLGFFSAIQSL 250
L T+ QQ + H + P + + G DIR+ S N G + + S
Sbjct: 139 LSLTLSSQQQQQQQHHQQHQPIHVGFGSGHGEDIRVGSGSTGSGVTN----GIANLVSSK 194
Query: 251 HYKEAPKTIDELVNA 265
+ K A + +DE+VNA
Sbjct: 195 YLKAAQELLDEVVNA 209
>At1g21960 hypothetical protein
Length = 204
Score = 28.9 bits (63), Expect = 4.2
Identities = 23/89 (25%), Positives = 36/89 (39%), Gaps = 14/89 (15%)
Query: 79 WFYMTKKSERYYLLPDEDKPHRSCKSKNFVPK-------VMFLTVVARPRFDSEKNVTFS 131
W Y SE+Y + + R CKS + V M+ V+ PR DS T +
Sbjct: 66 WLYSAGLSEQYVDIANSQLTERICKSISMVDSSVCATLVYMYCKVIVPPRIDSFDETTNN 125
Query: 132 GKIGIFPFVTQEPAKRTSVNRVAGTMETK 160
++ PA + V+R+A + K
Sbjct: 126 IEL-------IRPANKLVVDRLARKVYNK 147
>At3g46600 scarecrow-like protein
Length = 583
Score = 28.1 bits (61), Expect = 7.2
Identities = 18/41 (43%), Positives = 23/41 (55%), Gaps = 1/41 (2%)
Query: 214 IQAATQDGFDIRLMCQPPNSPDFNVLDLGFFSAIQSLHYKE 254
+QAA + F++ L Q P S D LG FS+I SLH E
Sbjct: 88 LQAAERSFFEV-LQDQTPISGDLEDGSLGNFSSITSLHQPE 127
>At5g57610 putative protein
Length = 1054
Score = 27.7 bits (60), Expect = 9.3
Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 192 GSTIFIQQDNARTHINPNDPEFIQAATQ--DGFDIRLMCQPPNSPDFNVLD 240
GS ++++D+ R ++ ++ A +G D R + Q P+SP FN++D
Sbjct: 130 GSLHYVERDDQRE----SERRYVDALNNLIEGTDFRKLQQYPDSPRFNLVD 176
>At4g14590 hypothetical protein
Length = 508
Score = 27.7 bits (60), Expect = 9.3
Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 25/96 (26%)
Query: 18 TSAVYRLIL*GAIQRHSSAIKPQLTEEGKRLRLEFCLSM------------------LEG 59
TSA+Y + + H + E KRL ++FC+ M L+
Sbjct: 157 TSALYSFLR--LLADHYRVLGVVKLENVKRLEIKFCVKMFREQLHLSLKIGRDLILLLQD 214
Query: 60 IPHDPMFKSMYNII---HIDEKWFYMTKKSERYYLL 92
+ H F+ ++N + H E Y K S RY+LL
Sbjct: 215 LSHVSEFREIWNDLVSNHCSE--IYQLKTSSRYFLL 248
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.327 0.140 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,173,916
Number of Sequences: 26719
Number of extensions: 298486
Number of successful extensions: 779
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 777
Number of HSP's gapped (non-prelim): 8
length of query: 339
length of database: 11,318,596
effective HSP length: 100
effective length of query: 239
effective length of database: 8,646,696
effective search space: 2066560344
effective search space used: 2066560344
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC136138.6