BLAST2 result
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134322.4 - phase: 0 /pseudo
(1735 letters)
Database: ara_mips
26,719 sequences; 11,318,596 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g09710 RNA-directed DNA polymerase -like protein 139 2e-32
At1g47910 reverse transcriptase, putative 139 2e-32
At2g15540 putative non-LTR retroelement reverse transcriptase 137 4e-32
At2g45230 putative non-LTR retroelement reverse transcriptase 130 9e-30
At2g17610 putative non-LTR retroelement reverse transcriptase 129 1e-29
At2g01840 putative non-LTR retroelement reverse transcriptase 129 2e-29
At1g24640 hypothetical protein 128 3e-29
At4g10830 putative protein 127 4e-29
At2g11240 pseudogene 127 7e-29
At2g31520 putative non-LTR retroelement reverse transcriptase 124 5e-28
At2g25550 putative non-LTR retroelement reverse transcriptase 124 5e-28
At3g45550 putative protein 124 6e-28
At2g17910 putative non-LTR retroelement reverse transcriptase 122 2e-27
At2g16680 putative non-LTR retroelement reverse transcriptase 122 2e-27
At2g05200 putative non-LTR retroelement reverse transcriptase 122 2e-27
At2g41580 putative non-LTR retroelement reverse transcriptase 122 2e-27
At3g31420 hypothetical protein 120 9e-27
At4g15590 reverse transcriptase like protein 110 7e-24
At3g32110 non-LTR reverse transcriptase, putative 97 6e-20
At2g31080 putative non-LTR retroelement reverse transcriptase 94 7e-19
>At4g09710 RNA-directed DNA polymerase -like protein
Length = 1274
Score = 139 bits (349), Expect = 2e-32
Identities = 67/133 (50%), Positives = 93/133 (69%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+ E++H++ K S+A+K D+SKAYDRI W +L++V+ ++GF +K I W+M V
Sbjct: 492 LITHEILHFLRVSGAKKYCSMAIKTDMSKAYDRIKWNFLQEVLMRLGFHDKWIRWVMQCV 551
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
TV YS ++N G ++P GLRQGDPLSPYLFILC E LS R A+ +G + GIRV
Sbjct: 552 CTVSYSFLINGSPQGSVVPSRGLRQGDPLSPYLFILCTEVLSGLCRKAQEKGVMVGIRVA 611
Query: 1476 RIAPRVSHLLFAD 1488
R +P+V+HLLFAD
Sbjct: 612 RGSPQVNHLLFAD 624
Score = 87.4 bits (215), Expect = 6e-17
Identities = 62/216 (28%), Positives = 95/216 (43%), Gaps = 30/216 (13%)
Query: 638 LGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPE 697
+GY F SGG+A +W+ V I+ + N I +RS +
Sbjct: 17 MGYAHRFTIPPEGLSGGLALYWKENVEVEILEAAPNFID------NRSVF---------- 60
Query: 698 IARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGL 757
W+ I L Q + W GDFNDIL + EK+G R FR + GL
Sbjct: 61 -------WDKISSLGAQRSSAWLLTGDFNDILDNSEKQGGPLRWEGFFLAFRSFVSQNGL 113
Query: 758 IDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPIL-- 815
D++ G +W + + ++ +LDRAL SW +LFP +K E L SDH P++
Sbjct: 114 WDINHTGNSLSW-RGTRYSHFIKSRLDRALGNCSWSELFPMSKCEYLRFEGSDHRPLVTY 172
Query: 816 LDRTLMVRSHRVERSFKFENARRVEEVVNDVVRGSW 851
+ RS + F+F+ R +E + +V+ W
Sbjct: 173 FGAPPLKRS----KPFRFDRRLREKEEIRALVKEVW 204
>At1g47910 reverse transcriptase, putative
Length = 1142
Score = 139 bits (349), Expect = 2e-32
Identities = 70/133 (52%), Positives = 92/133 (68%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+A E+ H + T K+K +A+K D+SKAYD+++W ++ ++ KMGF EK I WIM +
Sbjct: 335 LIAQEMFHGLRTNSSCKDKFMAIKTDMSKAYDQVEWNFIEALLRKMGFCEKWISWIMWCI 394
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
TV Y V++N + G IIP GLRQGDPLSPYLFILC E L A IR AE + + GI+V
Sbjct: 395 TTVQYKVLINGQPKGLIIPERGLRQGDPLSPYLFILCTEVLIANIRKAERQNLITGIKVA 454
Query: 1476 RIAPRVSHLLFAD 1488
+P VSHLLFAD
Sbjct: 455 TPSPAVSHLLFAD 467
>At2g15540 putative non-LTR retroelement reverse transcriptase
Length = 1225
Score = 137 bits (346), Expect = 4e-32
Identities = 64/133 (48%), Positives = 95/133 (71%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+A E H + T K+K +A+K D+SKAYDR++W++LR +M KMGF++K + WI+ +
Sbjct: 498 LIAQENFHALRTNPACKKKYMAIKTDMSKAYDRVEWSFLRALMLKMGFAQKWVDWIIFCI 557
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V Y ++LN G I P G+RQGDP+SP+LFILC E L A++++AE G +QG+++
Sbjct: 558 SSVSYKILLNGSPKGFIKPSRGIRQGDPISPFLFILCTEALVAKLKDAEWHGRIQGLQIS 617
Query: 1476 RIAPRVSHLLFAD 1488
R +P SHLLFAD
Sbjct: 618 RASPSTSHLLFAD 630
Score = 102 bits (254), Expect = 2e-21
Identities = 76/296 (25%), Positives = 130/296 (43%), Gaps = 12/296 (4%)
Query: 588 MSIIAWNCRGLGNLRVIPKIKFLVRYYKQDILFLCETMVEVNKIEEFRYLLGYDFCFAPA 647
M +I+WNC+G+G +++ + R Y LFL ET ++ ++ + LG+D
Sbjct: 1 MRLISWNCQGVGPKTTSRRLEEMCRMYSPGFLFLSETKNDLVYLQNVQVSLGFDCLKTVE 60
Query: 648 RNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGF-YGYPEIARRRDSWN 706
SGG+A F+ + I IE + F F YG P + R W
Sbjct: 61 PIGNSGGLALFYSRDYPVKFIYVCDRLID--IETIIDGNRVFITFVYGDPVVQYRELVWK 118
Query: 707 FIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYL 766
+ + + PW +GDFN+I+ + EK+G R F I++ G+ID G L
Sbjct: 119 RLTRIGIVRSEPWFMIGDFNEIIGNHEKRGGKKRSESSFLPFCCMIENCGMIDFPSTGSL 178
Query: 767 FTWF--KSLGTT-----RVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLDRT 819
F+W +S G +++ +LDRA+ W ++ + +E L SDH P+L +
Sbjct: 179 FSWVGKRSCGVAGRKRRDLIKCRLDRAMGNEEWHSIYSHTNVEYLQHRGSDHKPLL--AS 236
Query: 820 LMVRSHRVERSFKFENARRVEEVVNDVVRGSWLGSTVSNVINNMNKYINCLCLISL 875
+ + +R + F F+ + + V+ W + + K NC IS+
Sbjct: 237 IQNKPYRPYKHFIFDKRWINKPGFKESVQEGWAFPSRGEGVPFFQKIKNCRQTISI 292
>At2g45230 putative non-LTR retroelement reverse transcriptase
Length = 1374
Score = 130 bits (326), Expect = 9e-30
Identities = 88/311 (28%), Positives = 144/311 (46%), Gaps = 7/311 (2%)
Query: 588 MSIIAWNCRGLGNLRVIPKIKFLVRYYKQDILFLCETMVEVNKIEEFRYLLGYDFCFAPA 647
M I++WNC+G+GN + ++ + Y +++FLCET N +E LG+
Sbjct: 1 MRILSWNCQGVGNTPTVRHLREIRGLYFPEVIFLCETKKRRNYLENVVGHLGFFDLHTVE 60
Query: 648 RNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPEIARRRDSWNF 707
+SGG+A W+++V ++ I A + + + T YG P A R + W
Sbjct: 61 PIGKSGGLALMWKDSVQIKVLQSDKRLIDALLIWQDKEFY-LTCIYGEPVQAERGELWER 119
Query: 708 IRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLF 767
+ L + PW GDFN+++ EK G R FR + GL +V+ GY F
Sbjct: 120 LTRLGLSRSGPWMLTGDFNELVDPSEKIGGPARKESSCLEFRQMLNSCGLWEVNHSGYQF 179
Query: 768 TWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLDRTLMVRSHRV 827
+W+ + +V+ +LDR +A +WM+LFP AK L SDH P++ L+ + R
Sbjct: 180 SWYGN-RNDELVQCRLDRTVANQAWMELFPQAKATYLQKICSDHSPLI--NNLVGDNWRK 236
Query: 828 ERSFKFENARRVEEVVNDVVRGSWLGSTVSNVINNMNKYINCLCLISLS*G*EKIYKFSS 887
FK++ E D++ W + M K +C IS +++ K SS
Sbjct: 237 WAGFKYDKRWVQREGFKDLLCNFWSQQSTKTNALMMEKIASCRREISKW---KRVSKPSS 293
Query: 888 SEGILHISVKL 898
+ I + KL
Sbjct: 294 AVRIQELQFKL 304
Score = 129 bits (325), Expect = 1e-29
Identities = 64/133 (48%), Positives = 90/133 (67%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+A EL+H + + K E+ +A+K DISKAYDR++W +L M +GF++ I IM V
Sbjct: 551 LIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEKAMRGLGFADHWIRLIMECV 610
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V Y V++N G IIP GLRQGDPLSPYLF++C E L +++AE + + G++V
Sbjct: 611 KSVRYQVLINGTPHGEIIPSRGLRQGDPLSPYLFVICTEMLVKMLQSAEQKNQITGLKVA 670
Query: 1476 RIAPRVSHLLFAD 1488
R AP +SHLLFAD
Sbjct: 671 RGAPPISHLLFAD 683
>At2g17610 putative non-LTR retroelement reverse transcriptase
Length = 773
Score = 129 bits (324), Expect = 1e-29
Identities = 64/132 (48%), Positives = 90/132 (67%), Gaps = 1/132 (0%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+A EL+H + TK K + VA KLDI+KA+D+I+W ++ +M +MGFSEK WIM +
Sbjct: 7 LIAHELIHSLHTK-KLVQPFVATKLDITKAFDKIEWGFIEAIMKQMGFSEKWCNWIMTCI 65
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
T YS+++N + + IIP G+RQGDP+SPYL++LC EGLSA I+ + L G +
Sbjct: 66 TTTTYSILINGQPVRRIIPKRGIRQGDPISPYLYLLCTEGLSALIQASIKAKQLHGFKAS 125
Query: 1476 RIAPRVSHLLFA 1487
R P +SHLLFA
Sbjct: 126 RNGPAISHLLFA 137
>At2g01840 putative non-LTR retroelement reverse transcriptase
Length = 1715
Score = 129 bits (323), Expect = 2e-29
Identities = 69/158 (43%), Positives = 102/158 (63%), Gaps = 2/158 (1%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
LVA EL+H + ++ + + VA+K DISKAYDR++W +L VM ++GF+ + + WIM V
Sbjct: 913 LVAHELLHSLKSRRECQSGYVAVKTDISKAYDRVEWNFLEKVMIQLGFAPRWVKWIMTCV 972
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V Y V++N G I P G+RQGDPLSPYLF+ CAE LS +R AE + G+++
Sbjct: 973 TSVSYEVLINGSPYGKIFPSRGIRQGDPLSPYLFLFCAEVLSNMLRKAEVNKQIHGMKIT 1032
Query: 1476 RIAPRVSHLLFADIDSV*GSIRSSYQSSRVRNLLWQNY 1513
+ +SHLLFAD DS+ R+S Q+ L+++ Y
Sbjct: 1033 KDCLAISHLLFAD-DSL-FFCRASNQNIEQLALIFKKY 1068
Score = 116 bits (290), Expect = 1e-25
Identities = 71/265 (26%), Positives = 130/265 (48%), Gaps = 7/265 (2%)
Query: 587 PMSIIAWNCRGLGNLRVIPKIKFLVRYYKQDILFLCETMVEVNKIEEFRYLLGY-DFCFA 645
PM + WNC+GLG + +++ + R Y D+LFL ET + N + +G+ D C
Sbjct: 362 PMRVGFWNCQGLGQPLTVRRLEEVQRVYFLDMLFLIETKQQDNYTRDLGVKMGFEDMCII 421
Query: 646 PARNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPEIARRRDSW 705
R SGG+ +W+ ++ ++++ + +E + + + + YG+P + R W
Sbjct: 422 SPR-GLSGGLVVYWKKHLSIQVISHDVRLVDLYVEYKNFNFY-LSCIYGHPIPSERHHLW 479
Query: 706 NFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGY 765
++ ++ + PW GDFN+IL+ +EKKG R ++ F + I + D+ +G
Sbjct: 480 EKLQRVSAHRSGPWMMCGDFNEILNLNEKKGGRRRSIGSLQNFTNMINCCNMKDLKSKGN 539
Query: 766 LFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLDRTLMVRSH 825
++W +E LDR + W FP + E L SDH P+++D V +
Sbjct: 540 PYSWV-GKRQNETIESCLDRVFINSDWQASFPAFETEFLPIAGSDHAPVIIDIAEEVCTK 598
Query: 826 RVERSFKFENAR-RVEEVVNDVVRG 849
R + F+++ + E+ V+ V RG
Sbjct: 599 RGQ--FRYDRRHFQFEDFVDSVQRG 621
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/135 (22%), Positives = 65/135 (47%), Gaps = 6/135 (4%)
Query: 11 LMEGNKFMVQLYSKADLVRILDRSPWLLDNNMIILKKVAIGEDPLTLAMDTTEIWAQKNE 70
+++ +F S+ L +L R PW + M+++++ DPL L + W Q E
Sbjct: 72 IIQNRRFQFIFPSEESLDTVLRRGPWSFADRMLVVERWTPDMDPLVL--NFIPFWIQVRE 129
Query: 71 LPFGFMDKKVGALVGSHIG--KMVKFDEENNYGL*RKYMRVRVEIALDAPLQQELIIEWE 128
+P F++ +V + +G K V FD + +++R++++ ++ PL+ + ++
Sbjct: 130 IPLQFLNLEVIDNIAGSLGERKAVDFDPFTTTRV--EFVRIQIKWDVNHPLRFQRNYQFS 187
Query: 129 EGDNIKLVFKFRETR 143
G N L F + R
Sbjct: 188 LGVNTVLSFYYERLR 202
>At1g24640 hypothetical protein
Length = 1270
Score = 128 bits (321), Expect = 3e-29
Identities = 72/159 (45%), Positives = 102/159 (63%), Gaps = 2/159 (1%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
LVA ELVH + + + +A+K D+SKAYDR++W+YLR ++ +GF K + WIM+ V
Sbjct: 514 LVAHELVHSLKVHPRISSEFMAVKSDMSKAYDRVEWSYLRSLLLSLGFHLKWVNWIMVCV 573
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N G II GLRQGDPLSP+LF+LC EGL+ + A+ G L+GI+
Sbjct: 574 SSVTYSVLINDCPFGLIILQRGLRQGDPLSPFLFVLCTEGLTHLLNKAQWEGALEGIQFS 633
Query: 1476 RIAPRVSHLLFADIDSV*GSIRSSYQSSRVRNLLWQNYG 1514
P V HLLFAD DS+ ++S + S V + + YG
Sbjct: 634 ENGPMVHHLLFAD-DSL-FLCKASREQSLVLQKILKVYG 670
Score = 91.7 bits (226), Expect = 3e-18
Identities = 58/214 (27%), Positives = 95/214 (44%), Gaps = 4/214 (1%)
Query: 638 LGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPE 697
L YD + + GG+A W+++V + N + A+++ + + YG P+
Sbjct: 14 LEYDQVYTVEPVGKCGGLALLWKSSVQVDLKFVDKNLMDAQVQ-FGAVNFCVSCVYGDPD 72
Query: 698 IARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGL 757
++R +W I + WC GDFNDILH+ EK G R + + F I+ L
Sbjct: 73 RSKRSQAWERISRIGVGRRDKWCMFGDFNDILHNGEKNGGPRRSDLDCKAFNEMIKGCDL 132
Query: 758 IDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLD 817
+++ G FTW G ++ +LDRA W FP + L SDH P+L+
Sbjct: 133 VEMPAHGNGFTWAGRRG-DHWIQCRLDRAFGNKEWFCFFPVSNQTFLDFRGSDHRPVLI- 190
Query: 818 RTLMVRSHRVERSFKFENARRVEEVVNDVVRGSW 851
LM F+F+ +E V + + +W
Sbjct: 191 -KLMSSQDSYRGQFRFDKRFLFKEDVKEAIIRTW 223
>At4g10830 putative protein
Length = 1294
Score = 127 bits (320), Expect = 4e-29
Identities = 64/133 (48%), Positives = 91/133 (68%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E++H + T+ + + +A+K D+SKAYDR++W +L M GFSE I WIM V
Sbjct: 913 MIAHEMMHSLKTRKRVSQSYMAVKTDVSKAYDRVEWNFLETTMRLFGFSETWIKWIMGAV 972
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V+YSV++N G I P G+RQGDPLSPYLFILCA+ L+ I+N + GD++GIR+
Sbjct: 973 KSVNYSVLVNGIPHGTIQPQRGIRQGDPLSPYLFILCADILNHLIKNRVAEGDIRGIRIG 1032
Query: 1476 RIAPRVSHLLFAD 1488
P V+HL FAD
Sbjct: 1033 NGVPGVTHLQFAD 1045
Score = 118 bits (296), Expect = 3e-26
Identities = 82/274 (29%), Positives = 128/274 (45%), Gaps = 13/274 (4%)
Query: 596 RGLGNLRVIPKIKFLVRYYKQDILFLCETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGI 655
+G+G ++ L + +K D+LFL ET+ + I +LG+ SGG+
Sbjct: 370 KGIGVPLTQSQLSNLCKVFKFDVLFLIETLNKCEVISNLASVLGFPNVITQPPQGHSGGL 429
Query: 656 AYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPEIARRRDSWNFIRGLARQI 715
A W+++V S + HI I ++ + + YG+P + R W L++
Sbjct: 430 ALLWKDSVRLSNLYQDDRHIDVHIS-INNINFYLSRVYGHPCQSERHSLWTHFENLSKTR 488
Query: 716 NLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGT 775
N PW +GDFN+IL ++EK G R W RGFR+ + L D+ G F+W
Sbjct: 489 NDPWILIGDFNEILSNNEKIGGPQRDEWTFRGFRNMVSTCDLKDIRSIGDRFSWVGE-RH 547
Query: 776 TRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLDRTLMVRSHRVERSFKFEN 835
+ V+ LDRA + LFP A+LE L SDH P+ L +L R R F+F+
Sbjct: 548 SHTVKCCLDRAFINSEGAFLFPFAELEFLEFTGSDHKPLFL--SLEKTETRKMRPFRFD- 604
Query: 836 ARRVEEV--VNDVVRGSWLGSTVSNVINNMNKYI 867
+R+ EV V+ W + IN K++
Sbjct: 605 -KRLLEVPHFKTYVKAGW-----NKAINGQRKHL 632
Score = 39.3 bits (90), Expect = 0.020
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 15/120 (12%)
Query: 30 ILDRSPWLLDNNMIILKK----VAIGEDPLTLAMDTTEIWAQKNELPFGFMDKKVGALVG 85
+L R PW ++ M+ + + + GE M W Q +P ++ + +VG
Sbjct: 91 VLQRGPWSFNDWMLSVHRWFPNITEGE------MKIIPFWVQIQGIPILYLTNAMARVVG 144
Query: 86 SHIGKM--VKFDEENNYGL*RKYMRVRVEIALDAPLQQELIIEWEEGDNIKLVFKFRETR 143
S +G + V FDE N ++RV++ D L+ + +++E +N + F+F R
Sbjct: 145 SRLGYVTDVDFDENANQ---MGFVRVKLAWNFDDHLRFQRNFQFQENENTIIKFRFERLR 201
>At2g11240 pseudogene
Length = 1044
Score = 127 bits (318), Expect = 7e-29
Identities = 64/133 (48%), Positives = 89/133 (66%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+ E +HY+ + K +A+K ++SKAYDRI+W +++ VM +MGF + I WI+ +
Sbjct: 377 LITHEALHYLKSLGAEKRCFMAVKTNMSKAYDRIEWDFIKLVMQEMGFHQTWISWILQCI 436
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
TV YS +LN G + P GLRQGDPLSP+LFI+C+E LS R A+ G L G+RV
Sbjct: 437 TTVSYSFLLNGSAQGAVTPERGLRQGDPLSPFLFIICSEVLSGLCRKAQLDGSLLGLRVS 496
Query: 1476 RIAPRVSHLLFAD 1488
+ PRV+HLLFAD
Sbjct: 497 KGNPRVNHLLFAD 509
Score = 38.1 bits (87), Expect = 0.045
Identities = 24/95 (25%), Positives = 46/95 (48%), Gaps = 3/95 (3%)
Query: 757 LIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILL 816
L D+ G +W + VV +LDRAL+ +W + +P ++ L SDH P+L
Sbjct: 6 LYDLRHSGNFLSW-RGKRHDHVVHCRLDRALSNGAWAEDYPASRCIYLCFEGSDHRPLLT 64
Query: 817 DRTLMVRSHRVERSFKFENARRVEEVVNDVVRGSW 851
L + + + F+++ + + V +V+ +W
Sbjct: 65 HFDLSKK--KKKGVFRYDRRLKNNDEVTALVQEAW 97
>At2g31520 putative non-LTR retroelement reverse transcriptase
Length = 1524
Score = 124 bits (311), Expect = 5e-28
Identities = 62/133 (46%), Positives = 86/133 (64%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E++H + + + + +A+K D+SKAYDR++W +L M GF K I WIM V
Sbjct: 707 MIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAV 766
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N G I P G+RQGDPLSPYLFILC + LS I S GDL+G+R+
Sbjct: 767 KSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG 826
Query: 1476 RIAPRVSHLLFAD 1488
AP ++HL FAD
Sbjct: 827 NGAPAITHLQFAD 839
Score = 108 bits (271), Expect = 2e-23
Identities = 66/229 (28%), Positives = 109/229 (46%), Gaps = 4/229 (1%)
Query: 623 ETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEV 682
ET+ + +K+ + Y LG+ N RSGG+A W+N V+ S+++ I + +
Sbjct: 191 ETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLALMWKNNVSLSLISQDERLIDSHVTFN 250
Query: 683 SRSAWTFTGFYGYPEIARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPN 742
++S + + YG+P + R W + ++ N W +GDFN+IL + EK G R
Sbjct: 251 NKSFY-LSCVYGHPTQSERHQLWQTLEHISDNRNAEWLLVGDFNEILSNAEKIGGPMREE 309
Query: 743 WLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLE 802
W R FR+ + + D+ +G F+W T V+ LDR ++W FP A+ E
Sbjct: 310 WTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHTHTVKCCLDRVFINSAWTATFPYAETE 368
Query: 803 NLVAPSSDHFPILLDRTLMVRSHRVERSFKFENARRVEEVVNDVVRGSW 851
L SDH P+L+ R + F+F+N +V+ SW
Sbjct: 369 FLDFTGSDHKPVLVH--FNESFPRRSKLFRFDNRLIDIPTFKRIVQTSW 415
>At2g25550 putative non-LTR retroelement reverse transcriptase
Length = 1750
Score = 124 bits (311), Expect = 5e-28
Identities = 62/133 (46%), Positives = 86/133 (64%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E++H + + + + +A+K D+SKAYDR++W +L M GF K I WIM V
Sbjct: 933 MIAHEVMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCNKWIGWIMAAV 992
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N G I P G+RQGDPLSPYLFILC + LS I S GDL+G+R+
Sbjct: 993 KSVHYSVLINGSPHGYITPTRGIRQGDPLSPYLFILCGDILSHLINGRASSGDLRGVRIG 1052
Query: 1476 RIAPRVSHLLFAD 1488
AP ++HL FAD
Sbjct: 1053 NGAPAITHLQFAD 1065
Score = 124 bits (311), Expect = 5e-28
Identities = 76/255 (29%), Positives = 123/255 (47%), Gaps = 4/255 (1%)
Query: 597 GLGNLRVIPKIKFLVRYYKQDILFLCETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGIA 656
G+G ++ L R Y DILFL ET+ + +K+ + Y LG+ N RSGG+A
Sbjct: 391 GIGMPLTQSRLFRLFRMYNYDILFLVETLNQCDKVCKLAYDLGFPNVITQPPNGRSGGLA 450
Query: 657 YFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFTGFYGYPEIARRRDSWNFIRGLARQIN 716
W+N V+ S+++ I + + ++S + + YG+P + R W + ++ N
Sbjct: 451 LMWKNNVSLSLISQDERLIDSHVTFNNKSFY-LSCVYGHPTQSERHQLWQTLEHISDNRN 509
Query: 717 LPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTT 776
W +GDFN+IL + EK G R W R FR+ + + D+ +G F+W T
Sbjct: 510 AEWLLVGDFNEILSNAEKIGGPMREEWTFRNFRNMVSHCDIEDMRSKGDRFSWVGE-RHT 568
Query: 777 RVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHFPILLDRTLMVRSHRVERSFKFENA 836
V+ LDR ++W FP A++E L SDH P+L+ R + F+F+N
Sbjct: 569 HTVKCCLDRVFINSAWTATFPYAEIEFLDFTGSDHKPVLVH--FNESFPRRSKLFRFDNR 626
Query: 837 RRVEEVVNDVVRGSW 851
+V+ SW
Sbjct: 627 LIDIPTFKRIVQTSW 641
Score = 47.4 bits (111), Expect = 7e-05
Identities = 31/135 (22%), Positives = 64/135 (46%), Gaps = 7/135 (5%)
Query: 11 LMEGNKFMVQLYSKADLVRILDRSPWLLDNNMIILKKVAIGEDPLTLAMDTTEIWAQKNE 70
+++ + + S+ + +L R PW ++ M+ + + + M W Q
Sbjct: 72 IIDKGRVQFKFQSEEAMNLVLRRGPWSFNDWMLSIHRWY--PNLSEAEMKIIPFWVQITG 129
Query: 71 LPFGFMDKKVGALVGSHIGKM--VKFDEENNYGL*RKYMRVRVEIALDAPLQQELIIEWE 128
+P F+ + VG+ +G + V FDE +N+ ++RVR+ LD PL+ + ++
Sbjct: 130 IPLLFLTNAMARCVGNRLGHVADVDFDENSNH---TGFVRVRINWNLDDPLRFQRNFQFA 186
Query: 129 EGDNIKLVFKFRETR 143
+G+N + F+F R
Sbjct: 187 DGENTVIKFRFERLR 201
>At3g45550 putative protein
Length = 851
Score = 124 bits (310), Expect = 6e-28
Identities = 61/133 (45%), Positives = 88/133 (65%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E++H + + + + +A+K D+SKAYDR++W +L M GF +K I WIM V
Sbjct: 172 MIAHEIMHSLKVRKRVSKTYMAVKTDVSKAYDRVEWDFLETTMRLFGFCDKWIGWIMAAV 231
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N G I P G+RQGDPLSPYLFILC + LS I+ S GD++G+R+
Sbjct: 232 KSVHYSVLINGSPHGYISPTRGIRQGDPLSPYLFILCGDILSHLIKVKASSGDIRGVRIG 291
Query: 1476 RIAPRVSHLLFAD 1488
AP ++HL FAD
Sbjct: 292 NGAPAITHLQFAD 304
>At2g17910 putative non-LTR retroelement reverse transcriptase
Length = 1344
Score = 122 bits (306), Expect = 2e-27
Identities = 62/133 (46%), Positives = 87/133 (64%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
LVA E++H + T + ++ +A K D+SKAYDR++W +L +M+ +GF+ K I WIM V
Sbjct: 529 LVAHEMIHSLRTNDRISKEHMAFKTDMSKAYDRVEWPFLETMMTALGFNNKWISWIMNCV 588
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N + G IIP G+RQGDPLSP LF+LC E L + AE G + GI+
Sbjct: 589 TSVSYSVLINGQPYGHIIPTRGIRQGDPLSPALFVLCTEALIHILNKAEQAGKITGIQFQ 648
Query: 1476 RIAPRVSHLLFAD 1488
V+HLLFAD
Sbjct: 649 DKKVSVNHLLFAD 661
Score = 104 bits (259), Expect = 5e-22
Identities = 71/259 (27%), Positives = 114/259 (43%), Gaps = 4/259 (1%)
Query: 617 DILFLCETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHIS 676
DILFL ET + + + LGYDF RSGG+A FW++ + + N +
Sbjct: 8 DILFLMETKNSQDFVYKVFCWLGYDFIHTVEPEGRSGGLAIFWKSHLEIEFLYADKNLMD 67
Query: 677 AKIEEVSRSAWTFTGFYGYPEIARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKG 736
++ ++ W + YG P R W + + + WC +GDFNDI +DEK G
Sbjct: 68 LQVSSRNK-VWFISCVYGLPVTHMRPKLWEHLNSIGLKRAEAWCLIGDFNDIRSNDEKLG 126
Query: 737 RATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLF 796
R + F H + + + ++ G FTW + + V+ KLDR +W +F
Sbjct: 127 GPRRSPSSFQCFEHMLLNCSMHELGSTGNSFTWGGN-RNDQWVQCKLDRCFGNPAWFSIF 185
Query: 797 PNAKLENLVAPSSDHFPILLDRTLMVRSHRVERSFKFENARRVEEVVNDVVRGSWLGSTV 856
PNA L SDH P+L+ T R + F+++ + +V+ SW +
Sbjct: 186 PNAHQWFLEKFGSDHRPVLVKFTNDNELFRGQ--FRYDKRLDDDPYCIEVIHRSWNSAMS 243
Query: 857 SNVINNMNKYINCLCLISL 875
++ I C IS+
Sbjct: 244 QGTHSSFFSLIECRRAISV 262
>At2g16680 putative non-LTR retroelement reverse transcriptase
Length = 1319
Score = 122 bits (306), Expect = 2e-27
Identities = 58/133 (43%), Positives = 90/133 (67%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+A E+VH + T K ++ + K D+SKAYDR++W++L++++ +GF++K I WIM V
Sbjct: 503 LIAHEIVHSLRTNDKISKEFMVFKTDMSKAYDRVEWSFLQEILVALGFNDKWISWIMGCV 562
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N + G I P G+RQGDP+SP+LF+LC E L ++ AE+ + GI+
Sbjct: 563 TSVTYSVLINGQHFGHITPERGIRQGDPISPFLFVLCTEALIHILQQAENSKKVSGIQFN 622
Query: 1476 RIAPRVSHLLFAD 1488
P V+HLLF D
Sbjct: 623 GSGPSVNHLLFVD 635
Score = 98.6 bits (244), Expect = 3e-20
Identities = 76/278 (27%), Positives = 129/278 (46%), Gaps = 16/278 (5%)
Query: 631 IEEFRYLLGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHISAKIEEVSRSAWTFT 690
++ FR+L GYD+ +SGG+A FW+N + + N + K+ + +S W +
Sbjct: 8 LKVFRWL-GYDYFHTIEPVGKSGGLAIFWKNHLEIDFLFEDKNLLDLKVSQGKKS-WFVS 65
Query: 691 GFYGYPEIARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRH 750
YG P + R + + + Q N WC +GDFNDIL +D K G +R + F++
Sbjct: 66 CVYGNPVLHLRYLLLDKLSSIGVQRNSAWCMIGDFNDILSNDGKLGGPSRLISSFQPFKN 125
Query: 751 SIQDVGLIDVHMEGYLFTWFKSLGTTR---VVEEKLDRALATNSWMQLFPNAKLENLVAP 807
+ + + + G FTW G TR ++ KLDR + W +F N+ L
Sbjct: 126 MLLNCDMHQMGSSGNSFTW----GGTRNDQWIQCKLDRCFGNSEWFTMFSNSHQWFLEKL 181
Query: 808 SSDHFPILLDRTLMVRSHRVER-SFKFENARRVEEVVNDVVRGSWLGSTVSNVINNMNKY 866
S H P+L++ V V R F ++ + SW+G+ +S+V ++M +
Sbjct: 182 GSHHRPVLVN---FVNDQEVFRGQFCYDKRFAEDPQCAASTLSSWIGNGISDVSSSMLRM 238
Query: 867 INCLCLISLS*G*EKIYKFSSSEGILHISVKLQGDICK 904
+ C IS G +K F++ IL + +L + K
Sbjct: 239 VKCRKAIS---GWKKNSDFNAQNRILRLRSELDEEKSK 273
>At2g05200 putative non-LTR retroelement reverse transcriptase
Length = 1229
Score = 122 bits (306), Expect = 2e-27
Identities = 61/133 (45%), Positives = 85/133 (63%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
L+ E++H++ T K S+A+K D+SKAYDR++W +L+ V+ + GF I W++ V
Sbjct: 446 LITHEVLHFLRTSSAKKHCSMAVKTDMSKAYDRVEWDFLKKVLQRFGFHSIWIDWVLECV 505
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YS ++N G ++P GLRQGDPLSP LFILC E LS A+ L G+RV
Sbjct: 506 TSVSYSFLINGTPQGKVVPTRGLRQGDPLSPCLFILCTEVLSGLCTRAQRLRQLPGVRVS 565
Query: 1476 RIAPRVSHLLFAD 1488
PRV+HLLFAD
Sbjct: 566 INGPRVNHLLFAD 578
Score = 79.3 bits (194), Expect = 2e-14
Identities = 47/142 (33%), Positives = 78/142 (54%), Gaps = 7/142 (4%)
Query: 726 NDILHSDEKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDR 785
N+IL + EK+G R FR I GL D+ G F+W + + V ++LDR
Sbjct: 36 NEILDNSEKRGGPPRDQGSFIDFRSFISKNGLWDLKYSGNPFSW-RGMRYDWFVRQRLDR 94
Query: 786 ALATNSWMQLFPNAKLENLVAPSSDHFPILLDRTLMVRSHRVER--SFKFENARRVEEVV 843
A++ NSW++ FP+ + E L SDH P++ + V RV+R F+F+N R +VV
Sbjct: 95 AMSNNSWLESFPSGRSEYLRFEGSDHRPLV----VFVDEARVKRRGQFRFDNRLRDNDVV 150
Query: 844 NDVVRGSWLGSTVSNVINNMNK 865
N +++ +W + ++V+ MN+
Sbjct: 151 NALIQETWTNAGDASVLTKMNQ 172
>At2g41580 putative non-LTR retroelement reverse transcriptase
Length = 1094
Score = 122 bits (305), Expect = 2e-27
Identities = 59/133 (44%), Positives = 85/133 (63%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E+VH + T K + + K D+SKAYDR++W +L+ ++ +GF+ I W+M V
Sbjct: 280 ILAHEIVHNLRTNEKISKDFMVFKTDMSKAYDRVEWPFLKGILLALGFNSTWINWMMACV 339
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+V YSV++N + G I P GLRQGDPLSP+LF+LC E L + AE G + GI+
Sbjct: 340 SSVSYSVLINGQPFGHITPHRGLRQGDPLSPFLFVLCTEALIHILNQAEKIGKISGIQFN 399
Query: 1476 RIAPRVSHLLFAD 1488
P V+HLLFAD
Sbjct: 400 GTGPSVNHLLFAD 412
>At3g31420 hypothetical protein
Length = 1491
Score = 120 bits (300), Expect = 9e-27
Identities = 65/137 (47%), Positives = 90/137 (65%), Gaps = 1/137 (0%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
++A E+ + + + + +ALK DI+KAYDR++W +L + M +MGF+ K I IM+ V
Sbjct: 736 IIAHEVYYALKARKRQANSYMALKTDITKAYDRLEWDFLEETMRQMGFNTKWIERIMICV 795
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
V +SV++N G I P G+R GDPLSPYLFILCAE LS I+ AE L+GIR+
Sbjct: 796 TMVRFSVLINGSPHGTIKPERGIRHGDPLSPYLFILCAEVLSHMIKQAEINKKLKGIRLS 855
Query: 1476 RIAPRVSHLLFADIDSV 1492
P +SHLLFAD DS+
Sbjct: 856 TQGPFISHLLFAD-DSI 871
Score = 91.3 bits (225), Expect = 4e-18
Identities = 64/239 (26%), Positives = 111/239 (45%), Gaps = 11/239 (4%)
Query: 617 DILFLCETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGIAYFWRNTVNCSIVNYSANHIS 676
DI+ L ET + ++I + LG+ + SGG+ FW ++V+ + ++N +
Sbjct: 210 DIICLSETKQQDDRIRDVGAELGFCNHVTVPPDGLSGGLVVFWNSSVDIFLCFSNSNLVD 269
Query: 677 AKIEEVSRSAWTFTGFYGYPEIARRRDSWNFIRGL--ARQINLPWCQMGDFNDILHSDEK 734
++ + ++ + YG+P + R W + L RQ W MGDFN+IL + EK
Sbjct: 270 LHVKS-NEGSFYLSFVYGHPNPSHRHHLWERLERLNTTRQ-GTAWFIMGDFNEILSNREK 327
Query: 735 KGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQ 794
+G RP + FR+ ++ D+ G F+W G V LDR +A N W
Sbjct: 328 RGGRLRPERTFQDFRNMVRGCNFTDLKSVGDRFSWAGKRGDHHVT-CSLDRTMANNEWHT 386
Query: 795 LFPNAKLENLVAPSSDHFPILLDRTLMVRSHRVERS--FKFENARRVEEVVNDVVRGSW 851
LFP ++ + SDH P++ + + + + ER F +++ +E VV W
Sbjct: 387 LFPESETVFMEYGESDHRPLVTN----ISAQKEERRGFFSYDSRLTHKEGFKQVVLNQW 441
>At4g15590 reverse transcriptase like protein
Length = 929
Score = 110 bits (275), Expect = 7e-24
Identities = 62/133 (46%), Positives = 80/133 (59%), Gaps = 1/133 (0%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
+V E VH M K KG++ + LKLD+ KAYDRI W +L + + G SE I IM V
Sbjct: 367 VVVQEAVHSMRRK-KGRKGWMLLKLDLEKAYDRIRWDFLAETLEAAGLSEGWIKRIMECV 425
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
+ S++ N EK P GLRQGDP+SPYLF+LC E L QI A RGD + I +
Sbjct: 426 AGPEMSLLWNGEKTDSFTPERGLRQGDPISPYLFVLCIERLCHQIETAVGRGDWKSISIS 485
Query: 1476 RIAPRVSHLLFAD 1488
+ P+VSH+ FAD
Sbjct: 486 QGGPKVSHVCFAD 498
>At3g32110 non-LTR reverse transcriptase, putative
Length = 1911
Score = 97.4 bits (241), Expect = 6e-20
Identities = 53/133 (39%), Positives = 75/133 (55%)
Query: 1356 LVAIELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWV 1415
+V ++ V + M + KG + + LKLD+ KAYDRI W L D + G + WIM V
Sbjct: 1090 IVVVQEVVHSMRRKKGVKGWMLLKLDLEKAYDRIRWDLLEDTLKAAGLPGTWVQWIMKCV 1149
Query: 1416 GTVDYSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVC 1475
++ N EK P GLRQGDPLSPYLF+LC E L I ++ + + I++
Sbjct: 1150 EGPSMRLLWNGEKTDAFKPLRGLRQGDPLSPYLFVLCIERLCHLIESSIAAKKWKPIKIS 1209
Query: 1476 RIAPRVSHLLFAD 1488
+ PR+SH+ FAD
Sbjct: 1210 QSGPRLSHICFAD 1222
Score = 80.1 bits (196), Expect = 1e-14
Identities = 65/239 (27%), Positives = 103/239 (42%), Gaps = 2/239 (0%)
Query: 614 YKQDILFLCETMVEVNKIEEFRYLLGYDFCFAPARNNRSGGIAYFWRNTVN-CSIVNYSA 672
Y D+L + ET ++ LG++ F SGG+ WR + S+V+ +
Sbjct: 592 YITDVLAIFETHAGGDQASRICQGLGFENSFRVDAVGHSGGLWLLWRTGIGEVSVVDSTD 651
Query: 673 NHISAKIEEVSRSAWTFTGFYGYPEIARRRDSWNFIRGLARQINLPWCQMGDFNDILHSD 732
I AK + + Y P +RR W+ + + R ++ P GDFN I+ D
Sbjct: 652 QFIHAK-DVNGKDNVNLVVVYAAPTASRRSGLWDRLGDVIRSMDGPVVIGGDFNTIVRLD 710
Query: 733 EKKGRATRPNWLIRGFRHSIQDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSW 792
E+ G R + F I D LID+ +G FTW + V ++LDR L
Sbjct: 711 ERSGGNGRLSSDSLAFGEWINDHSLIDLGFKGNKFTWKRGREERFFVAKRLDRVLCCAHA 770
Query: 793 MQLFPNAKLENLVAPSSDHFPILLDRTLMVRSHRVERSFKFENARRVEEVVNDVVRGSW 851
+ A + +L +SDH P+ + T V +R R F+FE A +++ SW
Sbjct: 771 RLKWQEASVLHLPFLASDHAPLYVQLTPEVSGNRGRRPFRFEAAWLSHPGFKELLLTSW 829
Score = 51.6 bits (122), Expect = 4e-06
Identities = 31/125 (24%), Positives = 61/125 (48%)
Query: 1 WEPKYQITLILMEGNKFMVQLYSKADLVRILDRSPWLLDNNMIILKKVAIGEDPLTLAMD 60
W+P + ++ + + FMV+ + + + L PW + +++K + +PL +
Sbjct: 120 WKPSGAMYVLDLPRHFFMVRFEKEEEFLTALTGGPWRAFGSCLLVKAWSPEFNPLKDEIV 179
Query: 61 TTEIWAQKNELPFGFMDKKVGALVGSHIGKMVKFDEENNYGL*RKYMRVRVEIALDAPLQ 120
TT IW + ++P F K + V +G+ +K D + ++ RV VE+ L PLQ
Sbjct: 180 TTPIWVRIADMPVSFYHKSILMSVAQGLGRPLKVDLTMLHFERGRFARVCVEVDLKRPLQ 239
Query: 121 QELII 125
L++
Sbjct: 240 GALLV 244
>At2g31080 putative non-LTR retroelement reverse transcriptase
Length = 1231
Score = 94.0 bits (232), Expect = 7e-19
Identities = 54/129 (41%), Positives = 74/129 (56%), Gaps = 1/129 (0%)
Query: 1360 ELVHYMMTKMKGKEKSVALKLDISKAYDRIDWAYLRDVMSKMGFSEK*I*WIMMWVGTVD 1419
E VH M K KG++ + LKLD+ KAYDR+ W +L++ + G SE IM V
Sbjct: 419 EAVHSMRRK-KGRKGWMLLKLDLEKAYDRVRWDFLQETLEAAGLSEGWTSRIMAGVTDPS 477
Query: 1420 YSVILNKEKIGPIIPGFGLRQGDPLSPYLFILCAEGLSAQIRNAESRGDLQGIRVCRIAP 1479
SV+ N E+ +P GLRQGDPLSPYLF+LC E L I + + + + I V
Sbjct: 478 MSVLWNGERTDSFVPARGLRQGDPLSPYLFVLCLERLCHLIEASVGKREWKPIAVSCGGS 537
Query: 1480 RVSHLLFAD 1488
++SH+ FAD
Sbjct: 538 KLSHVCFAD 546
Score = 57.8 bits (138), Expect = 5e-08
Identities = 36/122 (29%), Positives = 57/122 (46%)
Query: 693 YGYPEIARRRDSWNFIRGLARQINLPWCQMGDFNDILHSDEKKGRATRPNWLIRGFRHSI 752
Y P ++RR W ++ + + P GDFN IL DE+ G R + F I
Sbjct: 7 YAAPSVSRRSGLWGELKDVVNGLEGPLLIGGDFNTILWVDERMGGNGRLSPDSLAFGDWI 66
Query: 753 QDVGLIDVHMEGYLFTWFKSLGTTRVVEEKLDRALATNSWMQLFPNAKLENLVAPSSDHF 812
++ LID+ +G FTW + + VV ++LDR + A + +L +SDH
Sbjct: 67 NELSLIDLGFKGNKFTWRRGRQESTVVAKRLDRVFVCAHARLKWQEAVVSHLPFMASDHA 126
Query: 813 PI 814
P+
Sbjct: 127 PL 128
Database: ara_mips
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,978,382
Number of sequences in database: 6832
Database: /data/blast2/ara_mips_chr2
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,737,135
Number of sequences in database: 4184
Database: /data/blast2/ara_mips_chr3
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,236,886
Number of sequences in database: 5377
Database: /data/blast2/ara_mips_chr4
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 1,748,816
Number of sequences in database: 4030
Database: /data/blast2/ara_mips_chr5
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 2,569,679
Number of sequences in database: 6098
Database: /data/blast2/ara_mips_chl
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 25,951
Number of sequences in database: 85
Database: /data/blast2/ara_mips_mit
Posted date: Jul 15, 2004 10:29 AM
Number of letters in database: 21,747
Number of sequences in database: 113
Lambda K H
0.357 0.159 0.586
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,945,542
Number of Sequences: 26719
Number of extensions: 1320426
Number of successful extensions: 5565
Number of sequences better than 10.0: 87
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5325
Number of HSP's gapped (non-prelim): 171
length of query: 1735
length of database: 11,318,596
effective HSP length: 113
effective length of query: 1622
effective length of database: 8,299,349
effective search space: 13461544078
effective search space used: 13461544078
T: 11
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 67 (30.4 bits)
Medicago: description of AC134322.4