BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148917.11 - phase: 0
(473 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC78524 similar to PIR|D84561|D84561 probable AAA-type ATPase [i... 335 2e-92
TC87610 similar to GP|9294102|dbj|BAB01954.1 contains similarity... 235 8e-87
TC93594 weakly similar to GP|20466452|gb|AAM20543.1 unknown prot... 223 9e-59
TC87252 similar to GP|11559424|dbj|BAB18781. mitochondrial prote... 179 6e-47
TC89129 weakly similar to GP|17385707|dbj|BAB78658. hypothetical... 129 3e-30
TC88541 weakly similar to GP|10176993|dbj|BAB10225. contains sim... 125 4e-29
AW684442 similar to GP|9758309|dbj contains similarity to AAA-ty... 67 1e-11
AW692531 weakly similar to GP|11559424|dbj mitochondrial protein... 66 3e-11
TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidops... 64 1e-10
TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AA... 64 1e-10
TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein... 64 1e-10
CB893172 homologue to PIR|T45642|T45 FtsH metalloproteinase-like... 64 1e-10
BF647954 homologue to GP|11094192|db 26S proteasome regulatory p... 63 2e-10
TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome re... 62 5e-10
TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulator... 62 5e-10
TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AA... 62 6e-10
TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15... 61 1e-09
TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle pr... 60 1e-09
AW684884 similar to GP|6069665|dbj EST D15969(C1695) corresponds... 58 9e-09
BI271823 similar to GP|21592745|gb cell division protein FtsH-li... 57 2e-08
>TC78524 similar to PIR|D84561|D84561 probable AAA-type ATPase [imported] -
Arabidopsis thaliana, partial (15%)
Length = 1697
Score = 335 bits (860), Expect = 2e-92
Identities = 184/451 (40%), Positives = 270/451 (59%), Gaps = 30/451 (6%)
Frame = +3
Query: 20 IMLMRTITNELL-----QFFQAGLHHLFR--QSSAQFTIIIEEFQGMARNQVFDAAQAYL 72
+ML+RT N+L+ F + L F Q + Q ++ I++F + N ++ AA+ Y+
Sbjct: 123 MMLLRTAINDLIPLKLRNFIISKLTRFFTDYQPNNQVSLQIDQFWDGSTNHLYYAAKEYI 302
Query: 73 GTKATVSVERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLICIEVDSSRIRSYDD 132
TK + + + +KV K + D + V D F+ I +KW+L+ +S+ +D+
Sbjct: 303 PTKISNTYKSLKVGKISKHNNMVLAFDGKQVVEDEFDDIKLKWRLV---ENSNNGDGFDN 473
Query: 133 DSSAVSEIR---------SYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIHSNE 183
E + + L+F +KH+DK+++ Y+P+V+ + IK G+ KIHS +
Sbjct: 474 PKKEYKEYKHRSKDYDENGFVLSFDEKHRDKVMEKYIPHVLSTYEAIKAGNKTLKIHSMQ 653
Query: 184 YGSWRHDVKFNHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPP 243
G W+ HP SF++LA+D +L+ I++DLD+F+R ++ Y++ GK WKRGYLLYGPP
Sbjct: 654 SGPWKQS-DLTHPASFDSLAMDPDLKNSIIDDLDRFLRRKKLYKKVGKPWKRGYLLYGPP 830
Query: 244 GTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCTINLQNR 303
GTGKSSLIAAMA YL +D+YDLDL+ V N L + + SNR+I+V EDIDC + +R
Sbjct: 831 GTGKSSLIAAMAKYLKFDVYDLDLSSVFSNSELMRAMRETSNRSIIVFEDIDCNSEVLDR 1010
Query: 304 EEEKEV--------VNNGDN----KVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDP 351
+ + + G N K TLSGLLN DGLWS CGEE I++FTTNHK+++DP
Sbjct: 1011AKPDKFPDMDFLDGIKMGKNMPPRKFTLSGLLNYMDGLWSSCGEERILIFTTNHKDKVDP 1190
Query: 352 ALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCI--TEHELFEKIEVLLGEVQVTPAEIGEE 409
ALLRPGRMD IHLS+ F+ L NYL I H LFE+IE LL +V V+PA + E
Sbjct: 1191ALLRPGRMDMHIHLSFLKAKAFRILAANYLDIEGNHHSLFEQIEELLEKVDVSPAVVAEY 1370
Query: 410 LTKDCDATECLQDLIKFLQAKKMIKEEVKNE 440
L + D L L+KFLQ ++++ EE E
Sbjct: 1371LLRSEDPDVALGALVKFLQDQEIVNEETSQE 1463
>TC87610 similar to GP|9294102|dbj|BAB01954.1 contains similarity to AAA-type
ATPase~gene_id:T20D4.3 {Arabidopsis thaliana}, partial
(53%)
Length = 1765
Score = 235 bits (600), Expect(2) = 8e-87
Identities = 128/263 (48%), Positives = 179/263 (67%), Gaps = 25/263 (9%)
Frame = +3
Query: 231 KAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLILSMSNRAILV 290
KAWKRGYLL+GPPGTGKS++I+A+AN++NYD+YDL+LT V DN LK+L++ S+++I+V
Sbjct: 786 KAWKRGYLLFGPPGTGKSTMISAIANFMNYDVYDLELTIVKDNNELKRLLIETSSKSIIV 965
Query: 291 IEDIDCTINL---QNREEEKEVVNN---------------GDNKVTLSGLLNATDGLWSC 332
IEDIDC+++L + +++EK+ V N ++KVTLSGLLN DG+WS
Sbjct: 966 IEDIDCSLDLTGQRKKKKEKDDVENDEKKDPIKKAEKEEKNESKVTLSGLLNFIDGIWSA 1145
Query: 333 CGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEH-ELFEK 391
CG E II+FTTN ++LDPAL+R GRMDK I +SYC++ FK L NYL + H +LF
Sbjct: 1146 CGSERIIIFTTNFVDKLDPALIRRGRMDKHIEMSYCSYQAFKVLARNYLDVETHDDLFPI 1325
Query: 392 IEVLLGEVQVTPAEIGEELTKDC---DATECLQDLIKFLQ-AKKMIKEEVKNEENIQEPE 447
IE LLGE +TPA++ E L D CL++LI+ L+ AKK +EE K + QE +
Sbjct: 1326 IEKLLGETNMTPADVAENLMPKSITEDFESCLKNLIQSLEIAKKKDEEEAKKKIEDQEAK 1505
Query: 448 PK--KMIEEETKNEENIKEEGEL 468
K K +E T+ EE +K + +L
Sbjct: 1506 LKAQKEKQELTQEEEKVKADEKL 1574
Score = 103 bits (257), Expect(2) = 8e-87
Identities = 72/240 (30%), Positives = 118/240 (49%), Gaps = 20/240 (8%)
Frame = +2
Query: 13 LVSAMASIMLMRTITNELLQFFQAGLHHLFRQSSAQFTIIIEEF----------QGMARN 62
L S MASIM + + + FF L R+ + +FT + + + N
Sbjct: 95 LGSIMASIMFVYAMYEK---FFPPALRRYLRKYTHKFTNFMYPYIKITFYEKSGDNLKHN 265
Query: 63 QVFDAAQAYLGTKATVSVERVKVSKSGDRKE-LSFNIDRNEEVSDVFEGISVKWKLICIE 121
+ + Q YL ++ R+K D + L ++D N+E++D F G+ V W I
Sbjct: 266 KTYTTIQTYLSANSSQRARRLKAEVIKDSQNPLVLSMDDNQEITDEFNGVKVWWSANHI- 442
Query: 122 VDSSRIRSYDDDSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIHS 181
+SR +S+ S+ E R LTFHK+H++ I SY+ +V+E K I + KI++
Sbjct: 443 --TSRTQSFSIYPSS-DEKRFLTLTFHKRHRELITTSYIQHVLEQGKAITMKNRQLKIYT 613
Query: 182 NEYGS---------WRHDVKFNHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKA 232
N + W H F HP SF TLA++ + + +I+NDL KF + +E+Y + GK+
Sbjct: 614 NNPSNDWFRYRSTKWSHTT-FEHPASFETLALEPKKKEEILNDLVKFKKGKEYYAKVGKS 790
>TC93594 weakly similar to GP|20466452|gb|AAM20543.1 unknown protein
{Arabidopsis thaliana}, partial (40%)
Length = 754
Score = 223 bits (569), Expect = 9e-59
Identities = 113/236 (47%), Positives = 160/236 (66%), Gaps = 28/236 (11%)
Frame = +1
Query: 203 AIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDI 262
A+ + +++IV+DL F +A+E+Y + GK WKRGYLLYGPPGTGKSSL+AA+AN+L YDI
Sbjct: 1 AMSPKKKKEIVDDLVTFSKAKEYYAKIGKPWKRGYLLYGPPGTGKSSLVAAIANFLKYDI 180
Query: 263 YDLDLTDVGDNKTLKQLILSMSNRAILVIEDIDCTINL-----------QNREEEKEVVN 311
YD++LT+V +N L++L++ +++++++VIEDIDC+++L + +EE+ E VN
Sbjct: 181 YDIELTNVKNNAELRKLLIGITSKSVVVIEDIDCSLDLTGQRKTDSENDKEKEEKNEEVN 360
Query: 312 -----------------NGDNKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALL 354
N ++VTLSGLLN DG+WS E +I+FTTN+ E+LD AL+
Sbjct: 361 QVAAASLQGLQAADKEKNKASQVTLSGLLNFIDGIWSASTGERLIIFTTNYVEKLDQALI 540
Query: 355 RPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELFEKIEVLLGEVQVTPAEIGEEL 410
R GRMD I LSY F GFK L +NYL I H LFE I+ LL E +TPA++ E L
Sbjct: 541 RRGRMDMHIELSYWGFDGFKMLAMNYLSIESHPLFETIQRLLEETNMTPADVAENL 708
>TC87252 similar to GP|11559424|dbj|BAB18781. mitochondrial protein-like
protein {Cucumis sativus}, partial (72%)
Length = 968
Score = 179 bits (455), Expect(2) = 6e-47
Identities = 108/289 (37%), Positives = 158/289 (54%), Gaps = 20/289 (6%)
Frame = +2
Query: 13 LVSAMASIMLMRTITNELLQFFQAGLHHLFRQSSAQFT--------IIIEEFQG--MARN 62
L S MASIM + + ++ FF L F + + +FT I E G + ++
Sbjct: 77 LGSIMASIMFVYAMFDK---FFPPNLRVYFLKYTNKFTNYMYPYIHIKFHELSGERLKQS 247
Query: 63 QVFDAAQAYLGTKATVSVERVKVSKSGDRKE-LSFNIDRNEEVSDVFEGISVKWKLICIE 121
+ + Q YL ++ R+K D + L ++D NEE+ D F G+ V W
Sbjct: 248 ETYKIIQTYLSDNSSQRARRLKAEVVKDSQNPLVLSMDDNEEIIDEFNGVKVWWTANYTT 427
Query: 122 VDSSRIRSYDDDSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIHS 181
S Y E R LTFHKKH++ I SY+ +V++ K I + K+++
Sbjct: 428 SKSQSFSYYPTSD----EKRFLTLTFHKKHREVITTSYIQHVLDEGKSIMSKNRQLKLYT 595
Query: 182 NEYGS---------WRHDVKFNHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKA 232
N S W H F HP F TLA++ E +++I+NDL KF + +E+Y + GKA
Sbjct: 596 NNPSSNWWGYRSKKWNHTT-FEHPARFGTLAMEPEKKQEILNDLLKFKKGKEYYAKVGKA 772
Query: 233 WKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKTLKQLIL 281
WKRGYLLYGPPGTGKS++I+A+ANY+NYD+YDL+LT V DN LK+L++
Sbjct: 773 WKRGYLLYGPPGTGKSTMISAIANYMNYDVYDLELTTVKDNNELKRLLI 919
Score = 26.2 bits (56), Expect(2) = 6e-47
Identities = 10/17 (58%), Positives = 15/17 (87%)
Frame = +3
Query: 281 LSMSNRAILVIEDIDCT 297
L S+++I+VIEDIDC+
Sbjct: 918 LKRSSKSIIVIEDIDCS 968
>TC89129 weakly similar to GP|17385707|dbj|BAB78658. hypothetical
protein~similar to Arabidopsis thaliana F18B3.210,
partial (7%)
Length = 652
Score = 129 bits (323), Expect = 3e-30
Identities = 66/185 (35%), Positives = 115/185 (61%), Gaps = 8/185 (4%)
Frame = +1
Query: 5 STMFDTKPLVSAMASIMLMRTITNELLQ-----FFQAGLHHLFRQSSAQFTIIIEEFQGM 59
ST+F S ASIML+R++ EL+ + +L + S T+IIEE G+
Sbjct: 100 STIFSA--YASMTASIMLLRSMAQELIPQPIRGYLYNTFRYLIKPRSPTLTLIIEESTGI 273
Query: 60 ARNQVFDAAQAYLGTKATVSVERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLIC 119
RNQV+DAA++YL TK T ER+K+SK K+L+ +++ E+++D++ G +KW+ IC
Sbjct: 274 TRNQVYDAAESYLSTKVTPENERLKISKVPKEKKLTIRLEKGEKLTDIYNGFPLKWRFIC 453
Query: 120 IEVDSSRIRSYDDDSSAV---SEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMA 176
E + + +++++V SE + +EL+FHKK+K+ +DSYLP++++ A+++K
Sbjct: 454 AETEKNSANDMHNNNNSVSVRSEKKYFELSFHKKYKEVGLDSYLPFILDKAQEMKDEXRV 633
Query: 177 NKIHS 181
K+H+
Sbjct: 634 LKMHT 648
>TC88541 weakly similar to GP|10176993|dbj|BAB10225. contains similarity to
AAA-type ATPase~gene_id:MYH19.21 {Arabidopsis thaliana},
partial (26%)
Length = 854
Score = 125 bits (314), Expect = 4e-29
Identities = 76/232 (32%), Positives = 124/232 (52%), Gaps = 7/232 (3%)
Frame = +1
Query: 15 SAMASIMLMRTITNELLQFFQAGLHHLFRQSSAQFT-----IIIEEFQG--MARNQVFDA 67
S +AS+M + I + + L + Q F I EF G + R++ + +
Sbjct: 172 SIIASLMFIWAIFQQYFPYQLRNLIDKYSQRLVTFIYPYIQITFHEFTGERLMRSEAYSS 351
Query: 68 AQAYLGTKATVSVERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLICIEVDSSRI 127
+ YL +KA+ +R+K + + + L ++D EE+ D F G+ + W +S+ I
Sbjct: 352 IENYLSSKASTQAKRLKGDIAKNNQSLILSMDDKEEICDEFNGMKLWWASGKKASNSNSI 531
Query: 128 RSYDDDSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGDMANKIHSNEYGSW 187
+ + + E R Y+LTFHK ++D I+ YL +V++ K I+ + K+++N W
Sbjct: 532 SLHQN----IDEKRYYKLTFHKHNRDVILGKYLSHVLKEGKAIQVKNRQRKLYTNSGSHW 699
Query: 188 RHDVKFNHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLL 239
H V F HP +F TLA+D E + I++DL F +A EFY R G+AWKRGYLL
Sbjct: 700 SH-VVFEHPSTFETLAMDLEKKEMIIDDLITFSKAGEFYARIGRAWKRGYLL 852
>AW684442 similar to GP|9758309|dbj contains similarity to AAA-type
ATPase~gene_id:MUA2.5 {Arabidopsis thaliana}, partial
(33%)
Length = 600
Score = 67.0 bits (162), Expect = 1e-11
Identities = 40/154 (25%), Positives = 79/154 (50%), Gaps = 3/154 (1%)
Frame = +2
Query: 22 LMRTITNELLQFFQAGLHH-LFRQSSAQFTIIIEEFQGMARNQVFDAAQAYLGTKATVSV 80
+++T+ L+F A L + LF S+ I E G+ N++++A Q YL + +++
Sbjct: 137 ILQTVFPPELRFASAKLFNKLFNCFSSYCYFEITEIDGVNTNELYNAVQLYLSSSVSITG 316
Query: 81 ERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVKWKLICIEVDSSRI--RSYDDDSSAVS 138
R+ ++++ + +F + N+ + D F G++V W+ + + +S R D+
Sbjct: 317 NRLSLTRAVNSSAFTFGLANNDSIIDTFNGVNVVWEHVVTQRNSQTFSWRPLPDEK---- 484
Query: 139 EIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQ 172
R + L KK K + +SYL Y+ME A I++
Sbjct: 485 --RGFTLRIKKKDKQLLXNSYLDYIMEKASDIRR 580
>AW692531 weakly similar to GP|11559424|dbj mitochondrial protein-like
protein {Cucumis sativus}, partial (12%)
Length = 662
Score = 66.2 bits (160), Expect = 3e-11
Identities = 57/203 (28%), Positives = 91/203 (44%), Gaps = 16/203 (7%)
Frame = +1
Query: 3 EISTMFDTKPLV-SAMASIMLMRTITNELLQFFQAGLHHLFRQSSAQFT---IIIEEFQG 58
E MF+ L+ S +AS+M + + L F + A F + + F+
Sbjct: 7 EKKNMFEIWGLIGSKVASLMFIWAMIQSYCPHQVHALIEKFSEKLANFCYPFVEVRFFEN 186
Query: 59 ----MARNQVFDAAQAYLGTKATVSVERVKVSKSGDRKELSFNIDRNEEVSDVFEGISVK 114
M N+ F + YL +K+T + K+ RK L +D ++ D FEG+
Sbjct: 187 IGDYMRTNEAFLYIENYLTSKSTNQAK--KLQGEYVRKSLVLKMDERQKFYDEFEGVKFV 360
Query: 115 WKLICIEVDSSRIRSYDDDSSAVSEIRSYELTFHKKHKDKIIDSYLPYVMEIAKQIKQGD 174
W LI I +++ + Y S+ R Y LTFH+ H+D + SYL +V+E K+I
Sbjct: 361 WSLIKIVPNTNSVSFYP-----ASDKRFYLLTFHRSHRDFVEKSYLNHVLEQGKEIGLSK 525
Query: 175 MANKIHSN-----EY---GSWRH 189
K+++N EY G W H
Sbjct: 526 RQRKLYTNCTGNGEYERGGKWSH 594
>TC85936 homologue to GP|13537115|dbj|BAB40755. AtSUG1 {Arabidopsis
thaliana}, partial (98%)
Length = 1633
Score = 64.3 bits (155), Expect = 1e-10
Identities = 49/170 (28%), Positives = 92/170 (53%), Gaps = 10/170 (5%)
Frame = +1
Query: 204 IDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIY 263
+D+++ ++I ++ ++ E + G A +G LLYGPPGTGK+ L A+A++ +
Sbjct: 637 LDQQI-KEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFI 813
Query: 264 DLDLTD-----VGDNKTLKQLILSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDN 315
+ ++ +G+ + + + M+ +I+ +++ID +I E NGD+
Sbjct: 814 RVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID-SIGSARMESGS---GNGDS 981
Query: 316 KV--TLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQI 363
+V T+ LLN DG + + ++ TN + LD ALLRPGR+D++I
Sbjct: 982 EVQRTMLELLNQLDGFEA--SNKIKVLMATNRIDILDQALLRPGRIDRKI 1125
>TC77261 homologue to GP|8777330|dbj|BAA96920.1 26S proteasome AAA-ATPase
subunit RPT3 {Arabidopsis thaliana}, partial (94%)
Length = 1575
Score = 64.3 bits (155), Expect = 1e-10
Identities = 44/148 (29%), Positives = 76/148 (50%), Gaps = 8/148 (5%)
Frame = +2
Query: 224 EFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTD-----VGDNKTLKQ 278
E Y++ G RG LLYGPPGTGK+ L A+AN+ + ++ +G+ + +
Sbjct: 647 ELYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVR 826
Query: 279 LILSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGLWSCCGE 335
+ ++ AI+ I+++D + + + + + + L LLN DG
Sbjct: 827 DVFRLAKENAPAIIFIDEVDA---IATARFDAQTGADREVQRILMELLNQMDGFDQTVNV 997
Query: 336 EHIIVFTTNHKERLDPALLRPGRMDKQI 363
+ ++ TN + LDPALLRPGR+D++I
Sbjct: 998 K--VIMATNRADTLDPALLRPGRLDRKI 1075
>TC76904 homologue to GP|4325041|gb|AAD17230.1| FtsH-like protein Pftf
precursor {Nicotiana tabacum}, partial (91%)
Length = 2667
Score = 63.9 bits (154), Expect = 1e-10
Identities = 51/192 (26%), Positives = 91/192 (46%), Gaps = 8/192 (4%)
Frame = +1
Query: 194 NHPMSFNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAA 253
N ++F+ +A +E ++D + ++ +F++ E + G +G LL GPPGTGK+ L A
Sbjct: 811 NTGVTFDDVAGVDEAKQDFM-EVVEFLKKPERFTSVGARIPKGVLLVGPPGTGKTLLAKA 987
Query: 254 MANYLNYDIYDLDLTD-------VGDNKTLKQLILSMSNRAILVIEDIDCTINLQNREEE 306
+A + + ++ +G ++ + N +V D I+ R+
Sbjct: 988 IAGEAGVPFFSISGSEFVEMFVGIGASRVRDLFKKAKENAPCIVFVD---EIDAVGRQRG 1158
Query: 307 KEVVNNGDNKV-TLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHL 365
+ D + TL+ LL DG G I+V TN + LD ALLRPGR D+Q+ +
Sbjct: 1159TGIGGGNDEREQTLNQLLTEMDGFEGNTGV--IVVAATNRADILDSALLRPGRFDRQVSV 1332
Query: 366 SYCNFSGFKQLV 377
+ G +++
Sbjct: 1333DVPDVRGRTEIL 1368
>CB893172 homologue to PIR|T45642|T45 FtsH metalloproteinase-like protein -
Arabidopsis thaliana, partial (25%)
Length = 661
Score = 63.9 bits (154), Expect = 1e-10
Identities = 52/190 (27%), Positives = 96/190 (50%), Gaps = 8/190 (4%)
Frame = +3
Query: 218 KFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTD-----VGD 272
+F+R + Y R G RG LL G PGTGK+ L A+A + ++ VG
Sbjct: 36 EFLRNPDRYARLGARPPRGVLLVGLPGTGKTLLAKAVAGEADVPFISCSASEFVELYVGM 215
Query: 273 NKTLKQLILSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGL 329
+ + + + + + +I+ I++ID ++R+ + +V N + + TL+ LL DG
Sbjct: 216 GASRVRDLFARAKKEAPSIIFIDEIDAVA--KSRDGKFRIVGNDEREQTLNQLLTEMDGF 389
Query: 330 WSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCITEHELF 389
S I++ TN + LDPAL RPGR D+ + + + G + ++ + +++ EL
Sbjct: 390 DS--NSPVIVLAATNRADVLDPALRRPGRFDRIVMVETPDRIGRESILKVH--VSKKELP 557
Query: 390 EKIEVLLGEV 399
+V +G++
Sbjct: 558 LAKDVYIGDI 587
>BF647954 homologue to GP|11094192|db 26S proteasome regulatory particle
triple-A ATPase subunit4 {Oryza sativa (japonica
cultivar-group)}, partial (53%)
Length = 649
Score = 63.2 bits (152), Expect = 2e-10
Identities = 51/154 (33%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Frame = +2
Query: 224 EFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDNKT--LKQLIL 281
E + R G +G LLYGPPGTGK+ L A+A+ ++ + + + + D +LI
Sbjct: 11 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESSRLIR 190
Query: 282 SMSNRA------ILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGLWSCCGE 335
M A I+ +++ID + R + + + + TL LLN DG + G+
Sbjct: 191 EMFGYARDHQPCIIFMDEIDA---IGGRRFSEGTSADREIQRTLMELLNQLDG-FDQLGK 358
Query: 336 EHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCN 369
II+ TN + LDPALLRPGR+D++I + N
Sbjct: 359 VKIIM-ATNRPDVLDPALLRPGRLDRKIEIPLPN 457
>TC85745 homologue to GP|17297987|dbj|BAB78491. 26S proteasome regulatory
particle triple-A ATPase subunit2b {Oryza sativa
(japonica cultivar-group), partial (98%)
Length = 1696
Score = 62.0 bits (149), Expect = 5e-10
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 10/150 (6%)
Frame = +3
Query: 224 EFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNYDIYDLDLTDVGDNKTLKQ 278
E Y G +G +LYG PGTGK+ L A+AN +L +L +GD L +
Sbjct: 723 ELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVR 902
Query: 279 LILSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDNKV--TLSGLLNATDGLWSCC 333
+ +++ AI+ I++ID + + + G+ ++ T+ LLN DG S
Sbjct: 903 ELFRVADDLSPAIVFIDEIDAV-----GTKRYDAHSGGEREIQRTMLELLNQLDGFDSR- 1064
Query: 334 GEEHIIVFTTNHKERLDPALLRPGRMDKQI 363
G+ +I+ TN E LDPALLRPGR+D++I
Sbjct: 1065GDVKVIL-ATNRIESLDPALLRPGRIDRKI 1151
>TC77012 homologue to SP|P54776|PRSA_LYCES 26S protease regulatory subunit
6A homolog (TAT-binding protein homolog 1) (TBP-1)
(Mg(2+), complete
Length = 1793
Score = 62.0 bits (149), Expect = 5e-10
Identities = 48/177 (27%), Positives = 86/177 (48%), Gaps = 8/177 (4%)
Frame = +1
Query: 199 FNTLAIDEELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYL 258
+N + E+ +++V + + +E +++ G +G LLYGPPGTGK+ + A A
Sbjct: 637 YNDIGGLEKQIQELVEAIVLPMTHKERFQKLGIRPPKGVLLYGPPGTGKTLMARACAAQT 816
Query: 259 NYDIYDLDLTD-----VGDNKTLKQLILSMSNR---AILVIEDIDCTINLQNREEEKEVV 310
N L +GD L + ++ I+ I++ID + + + EV
Sbjct: 817 NATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKSPCIIFIDEIDA---IGTKRFDSEVS 987
Query: 311 NNGDNKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSY 367
+ + + T+ LLN DG S + ++ TN + LDPAL+R GR+D++I +
Sbjct: 988 GDREVQRTMLELLNQLDGFSS--DDRIKVIAATNRADILDPALMRSGRLDRKIEFPH 1152
>TC86159 homologue to GP|21387177|gb|AAM47992.1 26S proteasome AAA-ATPase
subunit RPT4a-like protein {Arabidopsis thaliana},
complete
Length = 1640
Score = 61.6 bits (148), Expect = 6e-10
Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 8/154 (5%)
Frame = +2
Query: 224 EFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDVGDN--KTLKQLIL 281
E + R G +G LLYGPPGTGK+ L A+A+ ++ + + + + D +LI
Sbjct: 557 ELFLRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIR 736
Query: 282 SMSNRA------ILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGLWSCCGE 335
M A I+ +++ID + R + + + + TL LLN DG + G+
Sbjct: 737 EMFGYARDHQPCIIFMDEIDA---IGGRRFSEGTSADREIQRTLMELLNQLDG-FDQLGK 904
Query: 336 EHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCN 369
+I+ TN + LDPALLRPGR+D++I + N
Sbjct: 905 VKMIM-ATNRPDVLDPALLRPGRLDRKIEIPLPN 1003
>TC85744 homologue to PIR|T08959|T08959 proteinase homolog F19B15.70 -
Arabidopsis thaliana, complete
Length = 1629
Score = 60.8 bits (146), Expect = 1e-09
Identities = 50/150 (33%), Positives = 79/150 (52%), Gaps = 10/150 (6%)
Frame = +2
Query: 224 EFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMAN-----YLNYDIYDLDLTDVGDNKTLKQ 278
E Y G +G +LYG PGTGK+ L A+AN +L +L +GD L +
Sbjct: 725 ELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVR 904
Query: 279 LILSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDNKV--TLSGLLNATDGLWSCC 333
+ +++ +I+ I++ID + + + G+ ++ T+ LLN DG S
Sbjct: 905 ELFRVADDLSPSIVFIDEIDAV-----GTKRYDAHSGGEREIQRTMLELLNQLDGFDSR- 1066
Query: 334 GEEHIIVFTTNHKERLDPALLRPGRMDKQI 363
G+ +I+ TN E LDPALLRPGR+D++I
Sbjct: 1067GDVKVIL-ATNRIESLDPALLRPGRIDRKI 1153
>TC85768 homologue to SP|P54774|CC48_SOYBN Cell division cycle protein 48
homolog (Valosin containing protein homolog) (VCP).
[Soybean], partial (95%)
Length = 2785
Score = 60.5 bits (145), Expect = 1e-09
Identities = 69/316 (21%), Positives = 139/316 (43%), Gaps = 8/316 (2%)
Frame = +2
Query: 152 KDKIIDSYLPYVMEIAKQIKQGDMANKIHSNEYGSWRHDVKFNHPMSFNTLAIDEELQRD 211
+D+ ID+ + M + + A + S+ + R V S++ + E ++R+
Sbjct: 1403 EDETIDAEILNSMAVTNE----HFATALGSSNPSALRETVVEVPNCSWDDIGGLENVKRE 1570
Query: 212 IVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTDV- 270
+ + V E + + G + +G L YGPPG GK+ L A+AN + + ++
Sbjct: 1571 LQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELL 1750
Query: 271 ----GDNKTLKQLILSM---SNRAILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLL 323
G+++ + I S +L +++D +I Q + D L+ LL
Sbjct: 1751 TMWFGESEANVREIFDKARGSAPCVLFFDELD-SIATQRGSSVGDAGGAADR--VLNQLL 1921
Query: 324 NATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFSGFKQLVVNYLCI 383
DG+ + I+ TN + +DPALLRPGR+D+ I++ + Q+ C+
Sbjct: 1922 TEMDGM--SAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIF--KACL 2089
Query: 384 TEHELFEKIEVLLGEVQVTPAEIGEELTKDCDATECLQDLIKFLQAKKMIKEEVKNEENI 443
+ + + +++ + T G ++T+ C Q K+ + + K+ K +
Sbjct: 2090 RKSPISKDVDI-RALAKYTQGFSGADITEIC------QRACKYAIRENIEKDIEKERKRS 2248
Query: 444 QEPEPKKMIEEETKNE 459
+ PE +EE+ ++E
Sbjct: 2249 ENPE---AMEEDIEDE 2287
Score = 55.5 bits (132), Expect = 4e-08
Identities = 75/333 (22%), Positives = 145/333 (43%), Gaps = 48/333 (14%)
Frame = +2
Query: 155 IIDSYL-PYVMEIAKQIKQGD---MANKIHSNEYGSWRHDVKFNHPMSFNTLAIDEEL-- 208
+ D+YL PY +E + +++GD + + S E+ D P + +A D E+
Sbjct: 497 LFDAYLKPYFLEAYRPVRKGDFFLVRGGMRSVEFKVIETD-----PHEYCVVAPDTEIFC 661
Query: 209 -----QRDIVNDLDKF----------------------VRAREFYRRTGKAWKRGYLLYG 241
+R+ N LD+ +R + ++ G +G LLYG
Sbjct: 662 EGEPIKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYG 841
Query: 242 PPGTGKSSLIAAMANYLNYDIYDLDLTDV-----GDNKTLKQLILSMSNR---AILVIED 293
PPG+GK+ + A+AN + ++ ++ G++++ + + + +I+ I++
Sbjct: 842 PPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDE 1021
Query: 294 IDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGLWSCCGEEHIIVF-TTNHKERLDPA 352
ID + ++E + + +S LL DGL S H+IV TN +DPA
Sbjct: 1022ID------SIAPKREKTHGEVERRIVSQLLTLMDGLKS---RAHVIVMGATNRPNSIDPA 1174
Query: 353 LLRPGRMDKQIHLSYCNFSGFKQLV---VNYLCITEHELFEKIEVLLGEVQVTPAEIGEE 409
L R GR D++I + + G +++ + + E EKI + T +G +
Sbjct: 1175LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKIS------KETHGYVGAD 1336
Query: 410 LTKDCD--ATECLQDLIKFLQAK-KMIKEEVKN 439
L C A +C+++ + + + + I E+ N
Sbjct: 1337LAALCTEAALQCIREKMDVIDLEDETIDAEILN 1435
>AW684884 similar to GP|6069665|dbj EST D15969(C1695) corresponds to a region
of the predicted gene.~similar to valosin-containing,
partial (18%)
Length = 561
Score = 57.8 bits (138), Expect = 9e-09
Identities = 49/173 (28%), Positives = 82/173 (47%), Gaps = 11/173 (6%)
Frame = +3
Query: 206 EELQRDIVNDLDKFVRAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDL 265
EEL DIV+ ++ E + G G LL+GPPG GK+ L A+AN + +
Sbjct: 57 EELXMDIVSLINP-----ELPKHLGVKPVTGILLHGPPGCGKTRLAHAIANETGLPFHRI 221
Query: 266 DLTDV--GDNKTLKQLILSMSNRA------ILVIEDIDCTINLQN---REEEKEVVNNGD 314
T+V G + ++ I + ++A I+ I++ID + + RE EK +V
Sbjct: 222 SATEVVSGVSGASEEYIRELFDKAKRTAPSIVFIDEIDAIASKREDLQREMEKRIVTQLM 401
Query: 315 NKVTLSGLLNATDGLWSCCGEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSY 367
+ + + G +++ TN + LDPAL RPGR D++ L++
Sbjct: 402 TSMDEPETSDESRGYV-------LVIGATNRPDSLDPALKRPGRFDREFLLAF 539
>BI271823 similar to GP|21592745|gb cell division protein FtsH-like protein
{Arabidopsis thaliana}, partial (33%)
Length = 714
Score = 57.0 bits (136), Expect = 2e-08
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 8/146 (5%)
Frame = +3
Query: 226 YRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTD-----VGDNKTLKQLI 280
Y++ G RG LL GPPGTGK+ L A+A + + ++ VG + +
Sbjct: 174 YQKLGAKLPRGVLLVGPPGTGKTLLARAVAGEAGVPFFTVSASEFVEMFVGRGAARIRDL 353
Query: 281 LSMSNR---AILVIEDIDCTINLQNREEEKEVVNNGDNKVTLSGLLNATDGLWSCCGEEH 337
S + + +I+ I+++D + R N + TL+ LL DG S
Sbjct: 354 FSRARKFAPSIIFIDELDAVGGKRGRG------FNEERDQTLNQLLTEMDGFES--EIRV 509
Query: 338 IIVFTTNHKERLDPALLRPGRMDKQI 363
+++ TN E LDPAL RPGR ++
Sbjct: 510 VVIAATNRPEALDPALCRPGRFSXKV 587
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.317 0.135 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,674,327
Number of Sequences: 36976
Number of extensions: 158443
Number of successful extensions: 1088
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1057
length of query: 473
length of database: 9,014,727
effective HSP length: 100
effective length of query: 373
effective length of database: 5,317,127
effective search space: 1983288371
effective search space used: 1983288371
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Medicago: description of AC148917.11