BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148403.6 - phase: 0 /pseudo
(1428 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BF003873 similar to GP|14715222|em putative polyprotein {Cicer a... 199 5e-51
AL366725 151 2e-36
TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Ci... 76 1e-13
BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, pa... 35 0.16
TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (AR... 35 0.27
TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA heli... 34 0.46
TC86168 homologue to GP|13936812|gb|AAK49947.1 TGF-beta receptor... 31 0.60
AW573695 weakly similar to GP|10177655|db gb|AAD43171.1~gene_id:... 33 0.61
BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barb... 33 0.61
NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein 32 1.4
CA859251 similar to GP|21305823|gb DNA polymerase I {Hz-1 insect... 32 1.4
TC86544 homologue to SP|P30706|PLSB_PEA Glycerol-3-phosphate acy... 32 1.8
TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate deh... 32 2.3
TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene... 32 2.3
TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protei... 31 3.0
TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helica... 31 3.0
AW257152 similar to PIR|D86409|D864 hypothetical protein AAF9842... 31 3.0
AL385482 similar to GP|5106924|gb|A putative cell wall protein {... 31 3.9
TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsi... 31 3.9
TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Ara... 30 5.1
>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
partial (82%)
Length = 559
Score = 199 bits (507), Expect = 5e-51
Identities = 102/135 (75%), Positives = 114/135 (83%)
Frame = +1
Query: 1294 WCRTCLEVKKVDPEVYWSVSDIGKSWNGGLPSGFTAASFEFAQRFPCVSTSKVSSGSISC 1353
W TC EVK+VD E++WSVSDI KSWNGG+ SG T ASFEFA CV+TS+V SGSISC
Sbjct: 1 WSWTCFEVKEVDCEIHWSVSDIRKSWNGGVSSGITTASFEFA*CLSCVATSEVCSGSISC 180
Query: 1354 NPK*RCAS*RQPYGRDFTGED**S*SEHVERQGDTSCESRLDGSDW*KLDVGA*K*DAGV 1413
+P+* CAS RQPYGRDFTGED**S SE +ERQGDTSCESRL S+W*KLDVGA*+*D GV
Sbjct: 181 DPE**CASQRQPYGRDFTGED**SKSEDIERQGDTSCESRLGQSEW*KLDVGA*E*DGGV 360
Query: 1414 SSRVVCLR*IFEDEN 1428
SRVVC+R*IFEDEN
Sbjct: 361 LSRVVCMR*IFEDEN 405
>AL366725
Length = 485
Score = 151 bits (382), Expect = 2e-36
Identities = 97/161 (60%), Positives = 112/161 (69%), Gaps = 1/161 (0%)
Frame = +3
Query: 120 SSTRTTLLRMLSSRDASSSRTV*GPTSRGRLDTNN*EFFRIWLIAAESMKRIRRLTTR** 179
SS RT LLR+LSSR+ASSSR V*GPTSRG+ DTN+ EF I I AES +RI RL TR *
Sbjct: 3 SSIRTMLLRLLSSRNASSSRMV*GPTSRGQSDTNSSEFSLI**IPAESTRRILRLMTRL* 182
Query: 180 MRGRARDSRVVLSRTVLPLIKGNRGWSMIGGLRRRM-LQRLCVSIVVGKATKATSALKKS 238
M GR R +RV LS V LI+ NR WSMIG LRRRM L+RL VS + KAT+ LK+S
Sbjct: 183 MSGRPRANRVALSLIVPLLIRANREWSMIGVLRRRMLLRRLSVSTMARKATRVMFVLKRS 362
Query: 239 RSVSGVARKFTL*LNASVRTLCVLTAMERVTLVHSVLSLRG 279
R+VSGV R+ L*L AS LC A +RV LV + SLRG
Sbjct: 363 RNVSGVTRRVIL*LIASEMILCASIATKRVILVPNASSLRG 485
>TC93153 similar to GP|14715220|emb|CAC44106. gag polyprotein {Cicer
arietinum}, partial (8%)
Length = 516
Score = 75.9 bits (185), Expect = 1e-13
Identities = 52/117 (44%), Positives = 66/117 (55%)
Frame = +3
Query: 16 MTLMEPRRGLRRLRGFSGLCSALRIRRCGLVLIS*PRKLMTGELLFCLPLGRRELL*LGL 75
M LM R G RRL+ +S C+ LR RRC L * ++ M G L+ CL R L * G
Sbjct: 153 MLLMVLRSG*RRLKEYSESCNVLRHRRCSLGRTC*LKRPMIGGLVCCLFWSRMMLW*PGP 332
Query: 76 FSGESS*EDTFRKMFAGRRRSSSLS*SKETCL*QSMLPSLWSCQSSTRTTLLRMLSS 132
SG S F++M R+R + S*++ TCL QSML SLW+ ST T+ R LSS
Sbjct: 333 CSGRSFWAGIFQRMSGVRKRLNFWS*NRVTCLSQSMLQSLWNLPHSTLITVRRQLSS 503
>BG452991 PIR|A25875|A25 histone H4 - Tetrahymena thermophila, partial (33%)
Length = 560
Score = 35.4 bits (80), Expect = 0.16
Identities = 31/78 (39%), Positives = 40/78 (50%)
Frame = +2
Query: 912 QRIRIA*TV*RYEFGL*MVILECETGYAED***ISEKYQESTKS*CKVCGLVGC*RSD*R 971
+ + + *TV R EFGL* V ECE G ED I YQ ++ C+V SD*R
Sbjct: 53 RELELP*TVQRLEFGL*SVATECEIGDVEDQQRIFG*YQRGSEGGCEVGRFNVWE*SD*R 232
Query: 972 Q*F*NRQSSCVEIPRKNL 989
*F*+ S V + N+
Sbjct: 233 W*F*S**SRSVAVSG*NM 286
>TC79570 similar to PIR|F86427|F86427 auxin response factor 6 (ARF6)
[imported] - Arabidopsis thaliana, partial (15%)
Length = 1143
Score = 34.7 bits (78), Expect = 0.27
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 15/65 (23%)
Frame = -3
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLL---------------WVLIFLI*MERWLSK 347
+L +L++LL LLLL+L+LH+++L+S L+ W+L FLI W S
Sbjct: 628 MLLLLLLLLLLLLLLLLLHMIILISE*VLMLKKLLELLCLGLRLRWMLTFLI---LWKSL 458
Query: 348 LQLRV 352
++LR+
Sbjct: 457 MRLRL 443
Score = 31.2 bits (69), Expect = 3.0
Identities = 25/62 (40%), Positives = 41/62 (65%)
Frame = -3
Query: 307 LIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLLSYV*NVLCL 366
L++LL*LLLL+L++ +LLL ++ LL +L+ L+ M +S+ L ++ LL +LCL
Sbjct: 667 LLLLL*LLLLLLLM--LLLLLLLLLLLLLLLLLHMIILISE*VLMLKKLL-----ELLCL 509
Query: 367 CL 368
L
Sbjct: 508 GL 503
Score = 30.4 bits (67), Expect = 5.1
Identities = 17/37 (45%), Positives = 28/37 (74%)
Frame = -3
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
+L +L +LL LLL++L+L ++LLL ++ LL +I LI
Sbjct: 667 LLLLL*LLLLLLLMLLLLLLLLLLLLLLLLLHMIILI 557
>TC86022 homologue to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (89%)
Length = 1982
Score = 33.9 bits (76), Expect = 0.46
Identities = 24/61 (39%), Positives = 41/61 (66%), Gaps = 3/61 (4%)
Frame = -2
Query: 296 TRIV*SEVLAILIILL*LLLLILVLHIVLLLSIV--FLLWVLIFLI*MERW-LSKLQLRV 352
T++V + L +L++LL LLL++L++ IVLL+ I+ L +L+ L+ + W L K +RV
Sbjct: 343 TQLVPPQPLLLLLLLLILLLILLLILIVLLMLILHHVPLHILLLLLILMMWSLLKPGVRV 164
Query: 353 R 353
R
Sbjct: 163 R 161
>TC86168 homologue to GP|13936812|gb|AAK49947.1 TGF-beta
receptor-interacting protein 1 {Phaseolus vulgaris},
complete
Length = 1322
Score = 31.2 bits (69), Expect(2) = 0.60
Identities = 30/94 (31%), Positives = 52/94 (54%), Gaps = 2/94 (2%)
Frame = +3
Query: 248 FTL*LNASVRTLCVLTAMERVTLVHSVLSLR--GRRLLVESLL*LVLRQRTRIV*SEVLA 305
F L + A+V L V+ +T++ V+ R LL L+ L+ R+V S +L
Sbjct: 276 FGLPITANVSALTVV-----ITVLFGVVMFRVIPVGLLPAVLIRLLSCGMCRLVSSCLLL 440
Query: 306 ILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
ILI+LL L + +LV+ ++LLL I ++ +F++
Sbjct: 441 ILILLLGLSISLLVISLLLLLPIRLWNFLRLFML 542
Score = 20.8 bits (42), Expect(2) = 0.60
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +1
Query: 237 KSRSVSGVARKFTL 250
K R+ S VARKFT+
Sbjct: 106 KRRNSSSVARKFTV 147
>AW573695 weakly similar to GP|10177655|db
gb|AAD43171.1~gene_id:MAC12.15~similar to unknown
protein {Arabidopsis thaliana}, partial (38%)
Length = 652
Score = 33.5 bits (75), Expect = 0.61
Identities = 25/88 (28%), Positives = 49/88 (55%), Gaps = 8/88 (9%)
Frame = +3
Query: 306 ILIILL*LLLLILVLHIVL-------LLSIVFLLWVLIFLI*MERWLSKLQLRVR*LLL- 357
++ L+ L++L ++L+++L LL ++ LLW ++ +*+ WL L LR R ++L
Sbjct: 189 VIDFLMLLMVLKVLLNVILMSPSLERLLFLILLLWFMLCWL*LLCWLFMLLLRPRLVVLE 368
Query: 358 SYV*NVLCLCLVVISKWI*FVYL*AVWM 385
+ LC LV+ I ++ * +W+
Sbjct: 369 EWDLTSLCPLLVLRRLRILIIFR*KLWL 452
>BG583840 GP|20146556|gb ATP synthase alpha subunit {Clethra barbinervis},
partial (17%)
Length = 585
Score = 33.5 bits (75), Expect = 0.61
Identities = 15/33 (45%), Positives = 28/33 (84%)
Frame = +2
Query: 306 ILIILL*LLLLILVLHIVLLLSIVFLLWVLIFL 338
+L++LL LLLL+L+L ++LLL ++ LL++ I++
Sbjct: 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYM 100
Score = 32.0 bits (71), Expect = 1.8
Identities = 15/32 (46%), Positives = 25/32 (77%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWV 334
+L +L++LL LLLL+L+L ++LLL I +W+
Sbjct: 11 LLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWL 106
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/35 (40%), Positives = 28/35 (80%)
Frame = +2
Query: 304 LAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFL 338
L +L++LL LLLL+L+L ++LLL ++ +++ ++L
Sbjct: 2 LLLLLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWL 106
Score = 29.6 bits (65), Expect = 8.8
Identities = 15/33 (45%), Positives = 24/33 (72%)
Frame = +2
Query: 313 LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWL 345
LLLL+L+L ++LLL ++ LL +L+ I + WL
Sbjct: 8 LLLLLLLLLLLLLLLLLLLLLLLLLYIYIYMWL 106
>NP212732 NP212732|AF106929.1|AAD39890.1 putative cell wall protein
Length = 576
Score = 32.3 bits (72), Expect = 1.4
Identities = 16/35 (45%), Positives = 28/35 (79%)
Frame = -3
Query: 304 LAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFL 338
L ++++LL ++LL+LVL +VLLL ++ +L VL+ L
Sbjct: 403 LVMVLLLLVVVLLVLVLFLVLLLVLLLVLLVLVEL 299
Score = 29.6 bits (65), Expect = 8.8
Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Frame = -3
Query: 259 LCVLTAM-ERVTLVHSVLSLRGRRLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLI 317
LC LT + E++T + L L RLL+ SL+ VL +L+++L +L+L
Sbjct: 484 LCFLTLLLEQLTFLF--LHLE*VRLLLLSLV-------------MVLLLLVVVLLVLVLF 350
Query: 318 LVLHIVLLLSIVFLL 332
LVL +VLLL ++ L+
Sbjct: 349 LVLLLVLLLVLLVLV 305
>CA859251 similar to GP|21305823|gb DNA polymerase I {Hz-1 insect virus}
[Heliothis zea virus 1], partial (2%)
Length = 803
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Frame = +3
Query: 272 HSVLSLRGRRLLVESLL*LVLRQRTRI----V*SEVLAIL-IILL*LLLLILVLHIVLLL 326
H L+ LL+ L+ +V+ +T V* +V+ I I+LL +L+LIL+L ++LLL
Sbjct: 450 HHYRMLKQHHLLLTELVKVVIEVKTPPLTMGV*IKVIIIQPILLLLILILILILILILLL 629
Query: 327 SIVFLLWVLIFLI 339
I+ ++ + LI
Sbjct: 630 LIIIIIHFITHLI 668
>TC86544 homologue to SP|P30706|PLSB_PEA Glycerol-3-phosphate
acyltransferase chloroplast precursor (EC 2.3.1.15)
(GPAT). [Garden pea], partial (85%)
Length = 1951
Score = 32.0 bits (71), Expect = 1.8
Identities = 24/65 (36%), Positives = 39/65 (59%), Gaps = 4/65 (6%)
Frame = +3
Query: 272 HSVLSLRGRRLLVESLL*LVLRQR----TRIV*SEVLAILIILL*LLLLILVLHIVLLLS 327
H L L+ LL+ LL L+LR + + +++ L++LL* LL +L+LHIVLLL
Sbjct: 108 HFSLHLKPHILLLLLLLLLLLRYLFVVLSLFIIFDLMQQLLLLL*QLLELLLLHIVLLLL 287
Query: 328 IVFLL 332
+ ++
Sbjct: 288 SILII 302
Score = 30.4 bits (67), Expect = 5.1
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Frame = +3
Query: 306 ILIILL*LLLLILVLHIVLLLSIVF-LLWVLIFLI*MERWLSKLQLRVR*LLLS 358
IL++LL LLLL+ L +VL L I+F L+ L+ L+* + L L L + LLLS
Sbjct: 135 ILLLLLLLLLLLRYLFVVLSLFIIFDLMQQLLLLL*--QLLELLLLHIVLLLLS 290
>TC77232 similar to SP|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase
chloroplast precursor (EC 1.1.1.95) (3-PGDH). [Mouse-ear
cress], partial (87%)
Length = 2474
Score = 31.6 bits (70), Expect = 2.3
Identities = 20/58 (34%), Positives = 38/58 (65%)
Frame = +3
Query: 281 RLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFL 338
+LLVE +L L++ ++L L++LL*+LLL+++L ++ + + LLW++ FL
Sbjct: 558 KLLVELVLGLIMWIY------KLLLNLVVLL*MLLLLILLLLLNMGLLFLLLWLVTFL 713
>TC88440 weakly similar to GP|7293965|gb|AAF49324.1| Eip74EF gene product
{Drosophila melanogaster}, partial (5%)
Length = 711
Score = 31.6 bits (70), Expect = 2.3
Identities = 29/78 (37%), Positives = 50/78 (63%)
Frame = -3
Query: 280 RRLLVESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
R+L ++SLL +L Q E++ +L+++ *LLL++L+L + LLL +V LL V++ L+
Sbjct: 406 RQLKLKSLL--LLHQM------EMMMVLLLVG*LLLVVLLL-VGLLLLVV*LLLVVLLLV 254
Query: 340 *MERWLSKLQLRVR*LLL 357
+ L LQL + L+L
Sbjct: 253 GLLLVLHLLQLVLHLLVL 200
>TC84839 similar to GP|19386827|dbj|BAB86205. hypothetical protein~similar
to Arabidopsis thaliana chromosome 5 T6I14_10, partial
(20%)
Length = 819
Score = 31.2 bits (69), Expect = 3.0
Identities = 16/37 (43%), Positives = 28/37 (75%)
Frame = -1
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLIFLI 339
+L +L++ + LLL+LVL I+LLL ++ LL +L+ L+
Sbjct: 288 LLLLLMVKMRRLLLLLVLLILLLLLLLLLLVLLVLLV 178
Score = 31.2 bits (69), Expect = 3.0
Identities = 32/101 (31%), Positives = 52/101 (50%), Gaps = 7/101 (6%)
Frame = -1
Query: 236 KKSRSVSGVARKFTL*LNASVRTLCVLTAMERVTLVHSVLSLRGRRLLVES-------LL 288
+++R G RK L + +R A R L+ R RR VE LL
Sbjct: 438 RRTRGTRGTTRKK---LRSEIRRRSGRLAHHRRRLLRH----RRRRSTVEIRTGT*LLLL 280
Query: 289 *LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIV 329
L+++ R ++ +L +LI+LL LLLL+LVL ++L+L ++
Sbjct: 279 LLMVKMRRLLL---LLVLLILLLLLLLLLLVLLVLLVLRVM 166
>TC86018 similar to GP|19423939|gb|AAL87312.1 putative RNA helicase
{Arabidopsis thaliana}, partial (12%)
Length = 885
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/41 (46%), Positives = 30/41 (72%), Gaps = 4/41 (9%)
Frame = -1
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFL----LWVLIFLI 339
+L +LI+LL LLL++L++ IVLL+ I+ L L +L+ LI
Sbjct: 693 LLLLLILLLILLLILLMMLIVLLMLILILHQVPLHILLLLI 571
Score = 30.4 bits (67), Expect = 5.1
Identities = 13/30 (43%), Positives = 25/30 (83%)
Frame = -1
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLL 332
+L +L+ILL +LLLIL++ +++LL ++ +L
Sbjct: 696 LLLLLLILLLILLLILLMMLIVLLMLILIL 607
Score = 29.6 bits (65), Expect = 8.8
Identities = 14/27 (51%), Positives = 22/27 (80%)
Frame = -1
Query: 313 LLLLILVLHIVLLLSIVFLLWVLIFLI 339
LLLL+L+L ++LLL ++ +L VL+ LI
Sbjct: 696 LLLLLLILLLILLLILLMMLIVLLMLI 616
>AW257152 similar to PIR|D86409|D864 hypothetical protein AAF98424.1
[imported] - Arabidopsis thaliana, partial (20%)
Length = 587
Score = 31.2 bits (69), Expect = 3.0
Identities = 15/46 (32%), Positives = 33/46 (71%)
Frame = +2
Query: 284 VESLL*LVLRQRTRIV*SEVLAILIILL*LLLLILVLHIVLLLSIV 329
+E+ L +V+ ++T ++ ++ + I++L LLLL+L L IVL+ +++
Sbjct: 242 LETFLLVVVAEKTNVLNDQITLLQILILLLLLLLLQLLIVLIQTLL 379
>AL385482 similar to GP|5106924|gb|A putative cell wall protein {Medicago
truncatula}, partial (42%)
Length = 402
Score = 30.8 bits (68), Expect = 3.9
Identities = 14/32 (43%), Positives = 27/32 (83%)
Frame = -2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWV 334
+L +L++++ LLL++L+L +VLLL +V LL++
Sbjct: 143 LLVLLLVVVLLLLVVLLLVVVLLLLVVELLYL 48
>TC88663 similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (34%)
Length = 946
Score = 30.8 bits (68), Expect = 3.9
Identities = 18/46 (39%), Positives = 31/46 (67%)
Frame = +2
Query: 308 IILL*LLLLILVLHIVLLLSIVFLLWVLIFLI*MERWLSKLQLRVR 353
++L +LLL+ +L +VLLL ++ LL +L+ L+ L L+LR+R
Sbjct: 512 LLLQAMLLLLRLLLLVLLLLLLVLLLLLLLLLLRSMLLLHLKLRLR 649
>TC89413 weakly similar to GP|8778473|gb|AAF79481.1| F1L3.23 {Arabidopsis
thaliana}, partial (47%)
Length = 749
Score = 30.4 bits (67), Expect = 5.1
Identities = 15/34 (44%), Positives = 26/34 (76%)
Frame = +2
Query: 303 VLAILIILL*LLLLILVLHIVLLLSIVFLLWVLI 336
+L +L +LL LLL+ L+L ++L+L +FLL +L+
Sbjct: 275 ILLLLFLLLVLLLIKLLLFLLLMLLTMFLLLLLL 376
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.368 0.165 0.613
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,441,353
Number of Sequences: 36976
Number of extensions: 721342
Number of successful extensions: 11083
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 2698
Number of HSP's successfully gapped in prelim test: 462
Number of HSP's that attempted gapping in prelim test: 7707
Number of HSP's gapped (non-prelim): 4005
length of query: 1428
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1320
effective length of database: 5,021,319
effective search space: 6628141080
effective search space used: 6628141080
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 36 (21.7 bits)
S2: 65 (29.6 bits)
Medicago: description of AC148403.6