TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC147875.9 + phase: 0 
         (122 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF635018 GP|2688582|gb| B. burgdorferi predicted coding region B...    47  3e-09

>BF635018 GP|2688582|gb| B. burgdorferi predicted coding region BB0654
           {Borrelia burgdorferi}, partial (2%)
          Length = 669

 Score = 47.4 bits (111), Expect(2) = 3e-09
 Identities = 24/30 (80%), Positives = 26/30 (86%)
 Frame = +2

Query: 1   MKNLSSMIEESSYKAKAKMKDIETLEKKGK 30
           MKNLSSMIEESSYKAKAKMKDIE   ++ K
Sbjct: 563 MKNLSSMIEESSYKAKAKMKDIEH*RRREK 652



 Score = 28.5 bits (62), Expect(2) = 3e-09
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = +1

Query: 24  TLEKKGKGQHGVM 36
           TLEKKGKGQHG M
Sbjct: 631 TLEKKGKGQHGGM 669


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.313    0.129    0.347 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,893,566
Number of Sequences: 36976
Number of extensions: 10571
Number of successful extensions: 32
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of query: 122
length of database: 9,014,727
effective HSP length: 84
effective length of query: 38
effective length of database: 5,908,743
effective search space: 224532234
effective search space used: 224532234
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 52 (24.6 bits)