BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146752.12 + phase: 2 /pseudo
(127 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [i... 44 1e-05
TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non... 36 0.003
BE319193 similar to GP|17933353|gb| putative receptor-interactin... 27 2.8
TC77923 similar to GP|21391996|gb|AAM48352.1 LD10526p {Drosophil... 27 2.8
TC82520 26 3.6
BQ135365 weakly similar to GP|17834086|gb| haymaker protein {Mus... 26 4.7
TC79709 similar to SP|Q39242|TRB2_ARATH Thioredoxin reductase 2 ... 26 4.7
TC88304 weakly similar to GP|11072027|gb|AAG28906.1 F12A21.14 {A... 26 4.7
TC91027 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20... 25 6.2
TC88016 similar to GP|21536768|gb|AAM61100.1 unknown {Arabidopsi... 25 6.2
BQ149912 25 6.2
BQ144444 GP|18376070|em related to tpa inducible protein {Neuros... 25 8.0
BF520135 25 8.0
TC82615 similar to GP|798954|emb|CAA89144.1| unknown {Saccharomy... 25 8.0
>CA919100 homologue to PIR|G90291|G902 endoglucanase precursor [imported] -
Sulfolobus solfataricus, partial (3%)
Length = 789
Score = 44.3 bits (103), Expect = 1e-05
Identities = 28/51 (54%), Positives = 32/51 (61%)
Frame = -3
Query: 74 FCRMLI*FGINRFL*RCQFLLGG*SVIACLPNQI*GRGELLTRRLVSVFLV 124
F M *FG +RFL*R LLGG VI CLPN+I* ++LV VFLV
Sbjct: 604 FYHMRR*FGTDRFL*RYPSLLGGFFVIGCLPNRI*SIEV*FQQKLVCVFLV 452
>TC80819 weakly similar to GP|10140689|gb|AAG13524.1 putative non-LTR
retroelement reverse transcriptase {Oryza sativa
(japonica cultivar-group)}, partial (2%)
Length = 1262
Score = 36.2 bits (82), Expect = 0.003
Identities = 26/83 (31%), Positives = 40/83 (47%)
Frame = +3
Query: 13 GNGVGGCGCGRRNF*RSVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLL 72
G+G C CG+R+ * SV ++ + C + + G G TL VT + + +
Sbjct: 423 GSGHAACLCGKRSV*GSVVFF*ITLFCRITSMTNGDGC*TL*MVTQ*KSSIDTLLPQVIF 602
Query: 73 RFCRMLI*FGINRFL*RCQFLLG 95
+ L+ FGIN FL R +L G
Sbjct: 603 QTGLWLMMFGINIFLQRFLYLCG 671
>BE319193 similar to GP|17933353|gb| putative receptor-interacting protein
{Arabidopsis thaliana}, partial (56%)
Length = 574
Score = 26.6 bits (57), Expect = 2.8
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 39 CSLLRLMFGSGYRTLPKVTLFVGYMICSQI 68
CSLL L F + T P ++ +G+ CS I
Sbjct: 416 CSLLSLSFRNQSHTFPALSSSIGHPSCSDI 327
>TC77923 similar to GP|21391996|gb|AAM48352.1 LD10526p {Drosophila
melanogaster}, partial (1%)
Length = 817
Score = 26.6 bits (57), Expect = 2.8
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +2
Query: 48 SGYRTLPKVTLFVGYMICSQIRSLLRFCRMLI* 80
SG R L K LF ++C ++ ++FCR+LI*
Sbjct: 686 SGNRKLLK--LFRNVLLCIEVEIEMKFCRLLI* 778
>TC82520
Length = 833
Score = 26.2 bits (56), Expect = 3.6
Identities = 15/39 (38%), Positives = 19/39 (48%)
Frame = +3
Query: 19 CGCGRRNF*RSVGYYFLMFLCSLLRLMFGSGYRTLPKVT 57
C GRR * S YF+ C + +MF G L +VT
Sbjct: 3 CLLGRRRV*GSGMLYFITLFCKKMFMMFAVGC*ILFRVT 119
>BQ135365 weakly similar to GP|17834086|gb| haymaker protein {Mus
musculus}, partial (7%)
Length = 1147
Score = 25.8 bits (55), Expect = 4.7
Identities = 14/26 (53%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Frame = +1
Query: 4 LVGGKG---VVVGNGVGGCGCGRRNF 26
L GG G VVG G G CGC R F
Sbjct: 58 LGGGLGWGFTVVGGGSGTCGCSRLFF 135
>TC79709 similar to SP|Q39242|TRB2_ARATH Thioredoxin reductase 2 (EC
1.6.4.5) (NADPH-dependent thioredoxin reductase 2) (NTR
2)., partial (52%)
Length = 1121
Score = 25.8 bits (55), Expect = 4.7
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = -1
Query: 6 GGKGVVVGNGVGGC-GCGRRN 25
GG+G V +G GGC GCG R+
Sbjct: 428 GGEGGGVSHGGGGCGGCGGRD 366
>TC88304 weakly similar to GP|11072027|gb|AAG28906.1 F12A21.14 {Arabidopsis
thaliana}, partial (11%)
Length = 1139
Score = 25.8 bits (55), Expect = 4.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -3
Query: 52 TLPKVTLFVGYMICSQIRSLLRFCRMLI*FGIN 84
T PKV + + + S +R LL RML F N
Sbjct: 276 TFPKVLSIISFDVASSLRGLLPTKRMLSPFNAN 178
>TC91027 similar to GP|14517502|gb|AAK62641.1 At2g38310/T19C21.20
{Arabidopsis thaliana}, partial (55%)
Length = 682
Score = 25.4 bits (54), Expect = 6.2
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Frame = -2
Query: 4 LVGGK--GVVVGNGVGGCGC 21
LVGG GVV G+GVG GC
Sbjct: 372 LVGGDCVGVVAGDGVGDGGC 313
>TC88016 similar to GP|21536768|gb|AAM61100.1 unknown {Arabidopsis
thaliana}, partial (95%)
Length = 705
Score = 25.4 bits (54), Expect = 6.2
Identities = 12/51 (23%), Positives = 21/51 (40%)
Frame = +1
Query: 19 CGCGRRNF*RSVGYYFLMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIR 69
C C *RS Y + +C + ++ G+ + L +G + C R
Sbjct: 40 CNCSCTCT*RSFNYEHFLRICVIKQIEIEMGFVVTSLIFLLIGIIACLSTR 192
>BQ149912
Length = 453
Score = 25.4 bits (54), Expect = 6.2
Identities = 18/45 (40%), Positives = 27/45 (60%)
Frame = +1
Query: 35 LMFLCSLLRLMFGSGYRTLPKVTLFVGYMICSQIRSLLRFCRMLI 79
LM L S + ++FG R+ +V +V Y+ C SLL FCR++I
Sbjct: 79 LMSLDSCVDIVFGIARRSR*RV--YVVYVCCLSC-SLLCFCRVVI 204
>BQ144444 GP|18376070|em related to tpa inducible protein {Neurospora
crassa}, partial (2%)
Length = 1256
Score = 25.0 bits (53), Expect = 8.0
Identities = 16/42 (38%), Positives = 21/42 (49%), Gaps = 1/42 (2%)
Frame = +1
Query: 6 GGKGVVVGNGVGGCGCGRRNF*RSVGYYFL-MFLCSLLRLMF 46
GG G + GVGGC R +F V Y C +LR++F
Sbjct: 550 GGGGPMGAEGVGGCAAVRLSFLSFVCYNIPDKHNCWVLRVVF 675
>BF520135
Length = 202
Score = 25.0 bits (53), Expect = 8.0
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = +1
Query: 81 FGINRFL*RCQFLLGG*SVIACLPNQI*GRGELLTRRLVSVFL 123
FG + + QFL G S++ CL ++ +GE L+ V L
Sbjct: 16 FGEKKTCQKSQFLPGVFSMVDCLRRRMYSKGESFIMMLICVLL 144
>TC82615 similar to GP|798954|emb|CAA89144.1| unknown {Saccharomyces
cerevisiae}, partial (7%)
Length = 744
Score = 25.0 bits (53), Expect = 8.0
Identities = 10/17 (58%), Positives = 12/17 (69%)
Frame = +1
Query: 4 LVGGKGVVVGNGVGGCG 20
+V G G VGNG+GG G
Sbjct: 463 VVSGMGTNVGNGMGGSG 513
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.358 0.167 0.583
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,545,852
Number of Sequences: 36976
Number of extensions: 72711
Number of successful extensions: 917
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of query: 127
length of database: 9,014,727
effective HSP length: 85
effective length of query: 42
effective length of database: 5,871,767
effective search space: 246614214
effective search space used: 246614214
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.7 bits)
S2: 52 (24.6 bits)
Medicago: description of AC146752.12