BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC146330.6 + phase: 0
(230 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC79780 similar to GP|18377731|gb|AAL67015.1 putative DNA bindin... 384 e-116
TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 269 8e-73
TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein... 262 9e-71
TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog... 261 2e-70
TC82618 similar to GP|9294614|dbj|BAB02953.1 DNA/RNA binding pro... 223 4e-59
TC78271 similar to GP|15594035|emb|CAC69852. nucleic acid bindin... 188 2e-48
TC77533 similar to GP|6996560|emb|CAB75429.1 oligouridylate bind... 103 7e-23
TC89748 homologue to PIR|B84565|B84565 probable spliceosome asso... 99 1e-21
BG644387 homologue to GP|6996560|emb oligouridylate binding prot... 97 7e-21
TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava ... 91 3e-19
TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garde... 86 1e-17
TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein... 86 2e-17
TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30... 85 3e-17
TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding pro... 84 5e-17
TC91399 weakly similar to PIR|S53494|S53494 RNA-binding protein ... 74 2e-16
TC84024 similar to PIR|S77714|S77714 RNA-binding protein precurs... 80 7e-16
TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding pro... 79 1e-15
TC88545 similar to GP|13560783|gb|AAK30205.1 poly(A)-binding pro... 79 1e-15
TC77542 similar to GP|6996560|emb|CAB75429.1 oligouridylate bind... 79 1e-15
TC81341 similar to GP|15292697|gb|AAK92717.1 putative RNA-bindin... 72 1e-13
>TC79780 similar to GP|18377731|gb|AAL67015.1 putative DNA binding protein
ACBF {Arabidopsis thaliana}, partial (67%)
Length = 1649
Score = 384 bits (987), Expect(2) = e-116
Identities = 184/189 (97%), Positives = 185/189 (97%)
Frame = +3
Query: 1 MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGF 60
MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGF
Sbjct: 57 MATTYHQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGF 236
Query: 61 IEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT 120
IEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT
Sbjct: 237 IEFVSHSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT 416
Query: 121 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM 180
DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM
Sbjct: 417 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM 596
Query: 181 RISAATPKK 189
RIS P +
Sbjct: 597 RISCCYPPR 623
Score = 52.8 bits (125), Expect(2) = e-116
Identities = 24/25 (96%), Positives = 24/25 (96%)
Frame = +2
Query: 187 PKKTTGYQQNPYAAVVAAAPVPKGI 211
PKKTTGYQQNPYAAVVAAAPVPK I
Sbjct: 617 PKKTTGYQQNPYAAVVAAAPVPKAI 691
>TC76334 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (68%)
Length = 1579
Score = 269 bits (687), Expect = 8e-73
Identities = 133/191 (69%), Positives = 149/191 (77%), Gaps = 2/191 (1%)
Frame = +1
Query: 7 QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
QPAS +EVRTLWIGDLQYW+DENYL CF +TGE+ S+K+IRNK T Q EGYGFIEF +
Sbjct: 205 QPASADEVRTLWIGDLQYWMDENYLYTCFGNTGELTSVKVIRNKQTSQSEGYGFIEFNTR 384
Query: 67 SAAERVLQTYNGTQMPGTEQTFRLNWASFGIGER--RPDAGPDHSIFVGDLAPDVTDYLL 124
+ AERVLQTYNGT MP Q +RLNWA+F GER R D GPDH+IFVGDLA DVTDYLL
Sbjct: 385 ATAERVLQTYNGTIMPNGGQNYRLNWATFSAGERSSRQDDGPDHTIFVGDLAADVTDYLL 564
Query: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISA 184
QETFR Y SV+GAKVV D TGRSKGYGFV+F+DE E+ RAM+EM GV CSTRPMRI
Sbjct: 565 QETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMTEMQGVLCSTRPMRIGP 744
Query: 185 ATPKKTTGYQQ 195
AT K Q
Sbjct: 745 ATNKNPAATTQ 777
Score = 66.2 bits (160), Expect = 1e-11
Identities = 54/195 (27%), Positives = 89/195 (44%), Gaps = 13/195 (6%)
Frame = +1
Query: 16 TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
T+++GDL V + L F + V K++ +++TG+ +GYGF+ F R +
Sbjct: 517 TIFVGDLAADVTDYLLQETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADEGEQMRAMT 696
Query: 75 TYNGTQM--------PGTEQTFRLNW---ASFGIGERRPDAGPDHS-IFVGDLAPDVTDY 122
G P T + AS+ + + P+++ IFVG+L P+VTD
Sbjct: 697 EMQGVLCSTRPMRIGPATNKNPAATTQPKASYNPSGGQSENDPNNTTIFVGNLDPNVTDD 876
Query: 123 LLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
L++ F T YG + K+ + K GFV+FSD S A+ +NG + +R+
Sbjct: 877 HLRQVF-TQYGELVHVKIPS------GKRCGFVQFSDRSCAEEAIRVLNGTLLGGQNVRL 1035
Query: 183 SAATPKKTTGYQQNP 197
S QQ+P
Sbjct: 1036SWGRTPSNKQTQQDP 1080
>TC87209 similar to GP|9663767|emb|CAC01237.1 RNA Binding Protein 45
{Nicotiana plumbaginifolia}, partial (69%)
Length = 1504
Score = 262 bits (669), Expect = 9e-71
Identities = 124/181 (68%), Positives = 148/181 (81%)
Frame = +3
Query: 8 PASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHS 67
P+S +EV+TLWIGDLQYW+DENYL +CFSHTGEV S+K+IRNK T Q EGYGF+EF+S +
Sbjct: 237 PSSADEVKTLWIGDLQYWMDENYLYNCFSHTGEVGSVKVIRNKQTNQSEGYGFLEFISRA 416
Query: 68 AAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQET 127
AERVLQT+NGT MP Q FRLNWA+F GE+R D PD++IFVGDLA DV+D+ L E
Sbjct: 417 GAERVLQTFNGTIMPNGGQNFRLNWATFSSGEKRHDDSPDYTIFVGDLAADVSDHHLTEV 596
Query: 128 FRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATP 187
FRT Y SV+GAKVV D TGR+KGYGFV+F+DESE+ RAM+EM GV CSTRPMRI A+
Sbjct: 597 FRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMTEMQGVLCSTRPMRIGPASN 776
Query: 188 K 188
K
Sbjct: 777 K 779
Score = 73.2 bits (178), Expect = 8e-14
Identities = 55/197 (27%), Positives = 93/197 (46%), Gaps = 15/197 (7%)
Frame = +3
Query: 16 TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
T+++GDL V +++LT F + V K++ ++ TG+ +GYGF+ F S R +
Sbjct: 540 TIFVGDLAADVSDHHLTEVFRTRYNSVKGAKVVIDRTTGRTKGYGFVRFADESEQMRAMT 719
Query: 75 TYNGTQMP--------------GTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVT 120
G GT QT + ++ + G + + + +IFVG+L P+VT
Sbjct: 720 EMQGVLCSTRPMRIGPASNKNLGT-QTSKASYQNPQGGAQNENDPNNTTIFVGNLDPNVT 896
Query: 121 DYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPM 180
D L++ F T YG + K+ + K GFV+F+D S A+ +NG + +
Sbjct: 897 DEHLKQVF-TQYGELVHVKIPS------GKRCGFVQFADRSSAEEALRVLNGTLLGGQNV 1055
Query: 181 RISAATPKKTTGYQQNP 197
R+S QQ+P
Sbjct: 1056RLSWGRSPANKQTQQDP 1106
>TC76886 similar to PIR|T01932|T01932 RNA binding protein homolog - common
tobacco (fragment), partial (67%)
Length = 1896
Score = 261 bits (667), Expect = 2e-70
Identities = 132/207 (63%), Positives = 159/207 (76%), Gaps = 8/207 (3%)
Frame = +2
Query: 6 HQPASL--EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEF 63
HQ L EE+RT+W+GDL +W+DE +L +CF+HTGEV S K+IRNK TGQ EGYGF+EF
Sbjct: 515 HQQKQLAPEEIRTIWLGDLHHWMDETFLHNCFAHTGEVASAKVIRNKQTGQSEGYGFVEF 694
Query: 64 VSHSAAERVLQTYNGTQMPGTEQTFRLNWASF----GIGERRP-DAGPDHSIFVGDLAPD 118
+ + AE+VLQ +NGT MP T+Q FRLNWA+F G GERR +A D S+FVGDLA D
Sbjct: 695 YTRAMAEKVLQNFNGTMMPNTDQAFRLNWATFSAAGGGGERRSSEATSDLSVFVGDLAID 874
Query: 119 VTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTR 178
VTD +LQETF + + S++GAKVV D NTGRSKGYGFV+F DESER RAM+EMNGVYCS+R
Sbjct: 875 VTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMTEMNGVYCSSR 1054
Query: 179 PMRISAATPKKTTGY-QQNPYAAVVAA 204
PMR+ ATPKKT G QQ AVV A
Sbjct: 1055PMRVGVATPKKTYGNPQQYSSQAVVLA 1135
Score = 50.4 bits (119), Expect = 6e-07
Identities = 45/195 (23%), Positives = 76/195 (38%), Gaps = 27/195 (13%)
Frame = +2
Query: 16 TLWIGDLQYWVDENYLTHCF-SHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
++++GDL V + L F S + K++ + TG+ +GYGF+ F S R +
Sbjct: 845 SVFVGDLAIDVTDAMLQETFASKFSSIKGAKVVIDSNTGRSKGYGFVRFGDESERTRAMT 1024
Query: 75 TYNGTQMP---------------GTEQTFRLNWA-----------SFGIGERRPDAGPDH 108
NG G Q + + G + +
Sbjct: 1025 EMNGVYCSSRPMRVGVATPKKTYGNPQQYSSQAVVLAGGGGHSNGAMAQGSQSEGDSNNT 1204
Query: 109 SIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMS 168
+IFVG L D++D L++ F +G V K+ KG GFV+ +D A+
Sbjct: 1205 TIFVGGLDSDISDEDLRQPF-LQFGDVISVKIPV------GKGCGFVQLADRKNAEEAIQ 1363
Query: 169 EMNGVYCSTRPMRIS 183
+NG + +R+S
Sbjct: 1364 GLNGTVIGKQTVRLS 1408
Score = 41.6 bits (96), Expect = 3e-04
Identities = 26/77 (33%), Positives = 39/77 (49%)
Frame = +2
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T+++G L + + L F G+VIS+KI K G GF++ AE +Q
Sbjct: 1205 TIFVGGLDSDISDEDLRQPFLQFGDVISVKIPVGK------GCGFVQLADRKNAEEAIQG 1366
Query: 76 YNGTQMPGTEQTFRLNW 92
NGT + +QT RL+W
Sbjct: 1367 LNGTVI--GKQTVRLSW 1411
>TC82618 similar to GP|9294614|dbj|BAB02953.1 DNA/RNA binding protein-like
{Arabidopsis thaliana}, partial (35%)
Length = 850
Score = 223 bits (569), Expect = 4e-59
Identities = 107/170 (62%), Positives = 130/170 (75%), Gaps = 1/170 (0%)
Frame = +1
Query: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVS 65
H +S + +TLW+GDL +W+DENYL CF+ TGE+ SIK+IRNK T Q EGYGF+EF S
Sbjct: 340 HHGSSAADNKTLWVGDLHHWMDENYLHRCFASTGEIFSIKVIRNKQTCQTEGYGFVEFTS 519
Query: 66 HSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGE-RRPDAGPDHSIFVGDLAPDVTDYLL 124
H AE+VLQTY G MP TEQ FRLNWA+F G+ +R D PD SIFVGDLA DVTD +L
Sbjct: 520 HGTAEKVLQTYAGMLMPNTEQPFRLNWATFSTGDHKRSDNVPDLSIFVGDLAADVTDTML 699
Query: 125 QETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVY 174
ETF Y SV+ AKVV D NTGRSKGYGFV+F D+ ER++A++EMNGV+
Sbjct: 700 LETFSDKYPSVKAAKVVFDANTGRSKGYGFVRFGDDGERSKALNEMNGVF 849
>TC78271 similar to GP|15594035|emb|CAC69852. nucleic acid binding protein
{Nicotiana tabacum}, partial (40%)
Length = 846
Score = 188 bits (477), Expect = 2e-48
Identities = 91/152 (59%), Positives = 111/152 (72%)
Frame = +1
Query: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVS 65
+Q S E +TLWIGDL W+DE+YL CF+ TGE+ S+K+IRNK +G EGYGF EF S
Sbjct: 391 NQHGSNGENKTLWIGDLHSWMDESYLHRCFASTGEITSVKVIRNKHSGISEGYGFAEFFS 570
Query: 66 HSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQ 125
H+ AE+VLQ Y G MP +Q FRLNWA+F G++ D D SIFVGDLA DVTD ++
Sbjct: 571 HATAEKVLQNYAGILMPNADQAFRLNWATFSTGDKGSDNVTDLSIFVGDLAADVTDSVVH 750
Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKF 157
ETF + Y SV+ AKVV D NTGRSKGYGFV+F
Sbjct: 751 ETFSSSYPSVKAAKVVYDANTGRSKGYGFVRF 846
>TC77533 similar to GP|6996560|emb|CAB75429.1 oligouridylate binding protein
{Nicotiana plumbaginifolia}, partial (79%)
Length = 1621
Score = 103 bits (256), Expect = 7e-23
Identities = 61/172 (35%), Positives = 98/172 (56%)
Frame = +1
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R++++G++ V E L FS G + K+IR + YGF+++ S+A +
Sbjct: 220 RSVYVGNIHPQVSEPLLQELFSSAGALEGCKLIRK----EKSSYGFVDYFDRSSAAIAIV 387
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
T NG + G Q+ ++NWA + G+R +G H IFVGDL+P+VTD L F Y S
Sbjct: 388 TLNGRNIFG--QSIKVNWA-YTRGQREDTSGHFH-IFVGDLSPEVTDATLYACFSA-YSS 552
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAAT 186
A+V+ D TGRS+G+GFV F ++ E A++++ G + +R +R + AT
Sbjct: 553 CSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDLTGKWLGSRQIRCNWAT 708
Score = 66.6 bits (161), Expect = 7e-12
Identities = 55/223 (24%), Positives = 93/223 (41%), Gaps = 31/223 (13%)
Frame = +1
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++GDL V + L CFS +++ ++ TG+ G+GF+ F + A+ +
Sbjct: 481 IFVGDLSPEVTDATLYACFSAYSSCSDARVMWDQKTGRSRGFGFVSFRNQQEAQSAINDL 660
Query: 77 NGTQMPGTEQTFRLNWASFGI---GERR--------------------------PDAGPD 107
G + G+ Q R NWA+ G GE + P+ P
Sbjct: 661 TGKWL-GSRQ-IRCNWATKGANMNGENQSSESKSVVELTSGTSEEAQEMTSDDSPEKNPQ 834
Query: 108 HS-IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRA 166
++ ++VG+LAP+VT L H+ G + D R KG+GFV++S E A
Sbjct: 835 YTTVYVGNLAPEVTSVDLH-----HHFHALGVGTIEDVRVQRDKGFGFVRYSTHGEAALA 999
Query: 167 MSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAA-APVP 208
+ N + +P++ S + G P + PVP
Sbjct: 1000IQMGNTRFLFGKPIKCSWGSKPTPPGTASTPLPPPASTHVPVP 1128
Score = 40.4 bits (93), Expect = 6e-04
Identities = 23/70 (32%), Positives = 38/70 (53%)
Frame = +1
Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
D+ S++VG++ P V++ LLQE F + G++ G K++ YGFV + D S
Sbjct: 205 DSSTCRSVYVGNIHPQVSEPLLQELF-SSAGALEGCKLIRK----EKSSYGFVDYFDRSS 369
Query: 163 RNRAMSEMNG 172
A+ +NG
Sbjct: 370 AAIAIVTLNG 399
>TC89748 homologue to PIR|B84565|B84565 probable spliceosome associated
protein [imported] - Arabidopsis thaliana, partial (56%)
Length = 707
Score = 99.0 bits (245), Expect = 1e-21
Identities = 56/177 (31%), Positives = 96/177 (53%)
Frame = +2
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
T ++G+L + E L F G V+++ + ++++T Q +GYGF+EF S A+ ++
Sbjct: 167 TAYVGNLDPQISEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKV 346
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N ++ G + R+N AS ++ D G + +F+G+L PDV + LL +TF V
Sbjct: 347 LNMIKLYG--KPIRVNKASQD--KKSLDVGAN--LFIGNLDPDVDEKLLYDTFSAFGVIV 508
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKTTG 192
K++ DP+T S+G+GF+ + + A+ MNG Y R + +S A K T G
Sbjct: 509 TNPKIMRDPDTRNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKG 679
>BG644387 homologue to GP|6996560|emb oligouridylate binding protein
{Nicotiana plumbaginifolia}, partial (53%)
Length = 717
Score = 96.7 bits (239), Expect = 7e-21
Identities = 58/170 (34%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
Frame = +2
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R++++G++ V E L FS TG + K+I+ + YGF+++ +A +
Sbjct: 119 RSVYVGNIHPQVTEPLLQEVFSSTGPLEGCKLIKK----EKSSYGFVDYFDRRSAALAIV 286
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
T NG + G Q ++NWA +R D +IFVGDL+P+VTD L F Y S
Sbjct: 287 TLNGRNLFG--QPIKVNWAY--TSAQREDTSSHFNIFVGDLSPEVTDATLYACFSV-YPS 451
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNG--VYCSTRPMRI 182
AKV+ D +GRS+G+GFV F ++ E A++++NG V T P+++
Sbjct: 452 CSDAKVMWDQKSGRSRGFGFVSFRNQQEAQSAINDLNG*VVRKQTNPLQL 601
Score = 42.4 bits (98), Expect = 2e-04
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +2
Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
D+ S++VG++ P VT+ LLQE F + G + G K++ YGFV + D
Sbjct: 104 DSSTCRSVYVGNIHPQVTEPLLQEVF-SSTGPLEGCKLIKK----EKSSYGFVDYFDRRS 268
Query: 163 RNRAMSEMNGVYCSTRPMRISAA 185
A+ +NG +P++++ A
Sbjct: 269 AALAIVTLNGRNLFGQPIKVNWA 337
>TC77624 similar to PIR|T12196|T12196 RNA-binding protein - fava bean
(fragment), partial (90%)
Length = 1214
Score = 91.3 bits (225), Expect = 3e-19
Identities = 56/184 (30%), Positives = 98/184 (52%)
Frame = +1
Query: 9 ASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSA 68
A ++ L+ G+L Y VD L G I+++ ++ TG+ G+ F+
Sbjct: 373 AEVDTRTKLYFGNLPYSVDSALLAGLIEEYGSAELIEVLYDRDTGKSRGFAFVTMSCVED 552
Query: 69 AERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETF 128
V+Q +G + G +T R+N++ + ++ +FVG+LA VT L + F
Sbjct: 553 CNAVIQNLDGKEFMG--RTLRVNFSDKPKPKEPLYPETEYKLFVGNLAWTVTSESLTQAF 726
Query: 129 RTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPK 188
+ H G+V GA+V+ D TG+S+GYGFV ++ +SE + A++ M+ V R +R+S A K
Sbjct: 727 QEH-GTVVGARVLFDGETGKSRGYGFVSYATKSEMDTALAIMDNVELEGRTLRVSLAQGK 903
Query: 189 KTTG 192
++ G
Sbjct: 904 RS*G 915
Score = 44.3 bits (103), Expect = 4e-05
Identities = 23/87 (26%), Positives = 44/87 (50%)
Frame = +1
Query: 7 QPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSH 66
+P E L++G+L + V LT F G V+ +++ + TG+ GYGF+ + +
Sbjct: 640 EPLYPETEYKLFVGNLAWTVTSESLTQAFQEHGTVVGARVLFDGETGKSRGYGFVSYATK 819
Query: 67 SAAERVLQTYNGTQMPGTEQTFRLNWA 93
S + L + ++ G +T R++ A
Sbjct: 820 SEMDTALAIMDNVELEG--RTLRVSLA 894
>TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garden pea,
partial (79%)
Length = 1141
Score = 85.9 bits (211), Expect = 1e-17
Identities = 58/182 (31%), Positives = 93/182 (50%), Gaps = 6/182 (3%)
Frame = +1
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
L++G+ + VD L F G V ++I N+ T G+GF+ + AE ++ +
Sbjct: 367 LFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEKF 546
Query: 77 NGTQMPGTEQTFRLNWAS-FGIGERRPDAGPDH-----SIFVGDLAPDVTDYLLQETFRT 130
NG G ++ +N AS G R + P I+V +LA +V + L++ F
Sbjct: 547 NGYDYNG--RSLVVNKASPKGSRPERTERAPRTFEPVLRIYVANLAWEVDNSRLEQVFSE 720
Query: 131 HYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAATPKKT 190
H G + A+VV D TGRS+G+GFV SDE+E N A++ ++G R +R+S A +
Sbjct: 721 H-GKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAALDGQSLEGRTIRVSVAEDRPR 897
Query: 191 TG 192
G
Sbjct: 898 RG 903
>TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A
chloroplast precursor (CP29A). [Wood tobacco] {Nicotiana
sylvestris}, partial (61%)
Length = 1374
Score = 85.5 bits (210), Expect = 2e-17
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 19/188 (10%)
Frame = +1
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
L++G+L + VD L F + G+V +++I +K TG+ G+GF+ S + E Q
Sbjct: 346 LFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQL 525
Query: 77 NGTQMPGTEQTF--------RLNWASFG----IGERRPDAGP-------DHSIFVGDLAP 117
NG + G E R + FG G RP P D+ + VG+LA
Sbjct: 526 NGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGSSDGDNRVHVGNLAW 705
Query: 118 DVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCST 177
V + L+ F G V AKV+ D +GRS+G+GFV FS E + A+ ++G +
Sbjct: 706 GVDNLALESLFGEQ-GQVLEAKVIYDRESGRSRGFGFVTFSSADEVDSAIRTLDGADLNG 882
Query: 178 RPMRISAA 185
R +R+S A
Sbjct: 883 RAIRVSPA 906
Score = 61.2 bits (147), Expect = 3e-10
Identities = 35/108 (32%), Positives = 56/108 (51%), Gaps = 4/108 (3%)
Frame = +1
Query: 94 SFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYG 153
+F G+ P P+ +FVG+L V L E F + G V +V+ D +TGRS+G+G
Sbjct: 298 TFDDGDDTPSYSPNQRLFVGNLPFSVDSAQLAEIFE-NAGDVEMVEVIYDKSTGRSRGFG 474
Query: 154 FVKFSDESERNRAMSEMNGVYCSTRPMRISAATP----KKTTGYQQNP 197
FV S +E A ++NG R +R++A P + + + +NP
Sbjct: 475 FVTMSSAAEVEAAAQQLNGYVVDGRELRVNAGPPPPPRSENSRFGENP 618
>TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30
{Arabidopsis thaliana}, partial (62%)
Length = 1294
Score = 84.7 bits (208), Expect = 3e-17
Identities = 53/171 (30%), Positives = 91/171 (52%), Gaps = 2/171 (1%)
Frame = +3
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++G+L + VD L F +G V ++I N+ T + G+GF+ + ER + +
Sbjct: 459 IFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAVNKF 638
Query: 77 NGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSI--FVGDLAPDVTDYLLQETFRTHYGS 134
+G ++ G T A G R + + +VG+L DV + L++ F H G
Sbjct: 639 SGFELDGRLLTVN-KAAPRGTPRLRQPRTFNSGLRAYVGNLPWDVDNSSLEQLFSEH-GK 812
Query: 135 VRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
V A+VV D TGRS+G+GFV S+E+E N A++ ++G + R +R++ A
Sbjct: 813 VESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAALDGQSFNGRAIRVNVA 965
>TC76341 similar to GP|7528270|gb|AAF63202.1| poly(A)-binding protein
{Cucumis sativus}, partial (90%)
Length = 2501
Score = 84.0 bits (206), Expect = 5e-17
Identities = 47/158 (29%), Positives = 87/158 (54%)
Frame = +3
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
+L++GDL+ V+++ L F+ G+V+S+++ R+ T + GYG++ F + A R L
Sbjct: 297 SLYVGDLEVNVNDSQLYDLFNQVGQVVSVRVCRDLATRRSLGYGYVNFTNPQDAARALDV 476
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N T P ++ R+ ++ R+ +IF+ +L + L +TF + +G +
Sbjct: 477 LNFT--PMNNKSIRVMYSHRDPSSRKSGTA---NIFIKNLDKTIDHKALHDTF-SSFGQI 638
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGV 173
K+ TD +G+SKGYGFV+F E A+ ++NG+
Sbjct: 639 MSCKIATD-GSGQSKGYGFVQFEAEDSAQNAIDKLNGM 749
Score = 63.2 bits (152), Expect = 8e-11
Identities = 48/193 (24%), Positives = 94/193 (47%), Gaps = 13/193 (6%)
Frame = +3
Query: 10 SLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAA 69
S + +++ +L E+ L + F G + S ++R+ G+ + +GF+ F + A
Sbjct: 816 SKTKFNNVYVKNLSESFTEDDLKNEFGAYGTITSAVLMRDA-DGRSKCFGFVNFENAEDA 992
Query: 70 ERVLQTYNGTQMPGTE-------------QTFRLNWASFGIGERRPDAGPDHSIFVGDLA 116
+ ++ NG ++ E Q + + + E D ++++ +L
Sbjct: 993 AKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQT-VKESVVDKFQGLNLYLKNLD 1169
Query: 117 PDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCS 176
+TD L+E F + +G++ K++ DPN G S+G GFV FS E +RA+ EMNG
Sbjct: 1170 DSITDEKLKEMF-SEFGTITSYKIMRDPN-GVSRGSGFVAFSTPEEASRALGEMNGKMIV 1343
Query: 177 TRPMRISAATPKK 189
++P+ ++ A K+
Sbjct: 1344 SKPLYVAVAQRKE 1382
>TC91399 weakly similar to PIR|S53494|S53494 RNA-binding protein cp33
precursor - Arabidopsis thaliana, partial (39%)
Length = 775
Score = 73.9 bits (180), Expect(2) = 2e-16
Identities = 45/160 (28%), Positives = 80/160 (49%), Gaps = 8/160 (5%)
Frame = +2
Query: 6 HQPASLEEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVS 65
+Q A + R L +G+L + + + L F G V+S++I+ + IT + G+ F+ +
Sbjct: 221 NQEAESTQSRRLLVGNLPFSLSSSQLAQLFGEAGNVVSVEILYDDITNRSRGFAFVTMGN 400
Query: 66 HSAAERVLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPD--------HSIFVGDLAP 117
AE ++ ++GT + G + ++N+ I +R G H I+ G+L
Sbjct: 401 VEDAEEAIRMFDGTTVGG--RAIKVNFPEVPIVGKRVQMGSTYRGYVDSPHKIYAGNLGW 574
Query: 118 DVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKF 157
D+T L++ F G + AKVV + N G+S+GYG F
Sbjct: 575 DMTSQYLRKAFAKQPGLL-SAKVVYERNNGKSRGYGICLF 691
Score = 28.5 bits (62), Expect(2) = 2e-16
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 153 GFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
GFV F + A+S MNGV RP+R+
Sbjct: 678 GFVSFETAEDVEVALSAMNGVEVQGRPLRL 767
>TC84024 similar to PIR|S77714|S77714 RNA-binding protein precursor 33K -
wood tobacco, partial (55%)
Length = 867
Score = 80.1 bits (196), Expect = 7e-16
Identities = 46/184 (25%), Positives = 94/184 (51%), Gaps = 12/184 (6%)
Frame = +3
Query: 12 EEVRTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAER 71
++ L++G+L + + + L F+ G V+S++I+ +++T + G+ F+ S A+
Sbjct: 324 DDAGRLYVGNLPFSMTSSQLADIFAEAGTVVSVEIVYDRLTDRSRGFAFVTMKSAEEAKE 503
Query: 72 VLQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPD------------HSIFVGDLAPDV 119
++ ++G+Q+ G ++ ++N+ G R G H I+ G+L +
Sbjct: 504 AIRMFDGSQVGG--RSAKVNFPEVPKGGERLVMGQKVRNSYRGFVDSPHKIYAGNLGWGM 677
Query: 120 TDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRP 179
L++ F G + GAK++ + + GRS+G+GFV F A++ MN V RP
Sbjct: 678 NSQDLRDAFDEQPGLL-GAKIIYERDNGRSRGFGFVTFETAEHLEAALNAMNXVEVQGRP 854
Query: 180 MRIS 183
+R++
Sbjct: 855 LRLN 866
>TC76331 similar to GP|7673355|gb|AAF66823.1| poly(A)-binding protein
{Nicotiana tabacum}, partial (97%)
Length = 2581
Score = 79.3 bits (194), Expect = 1e-15
Identities = 47/167 (28%), Positives = 90/167 (53%)
Frame = +3
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
+L++GDL V ++ L F+ G+V+S+++ R+ T + GYG++ + + A R L
Sbjct: 447 SLYVGDLDMNVTDSQLYDLFNQLGQVVSVRVCRDLTTRRSLGYGYVNYSNPQDAARALDV 626
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N T P + R+ ++ R+ G +IF+ +L + L +TF + +G++
Sbjct: 627 LNFT--PLNNRPIRIMYSHRDPSIRKSGQG---NIFIKNLDKAIDHKALHDTF-SSFGNI 788
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
KV D +G+SKGYGFV+F E +A+ ++NG+ + + + +
Sbjct: 789 LSCKVAVD-GSGQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYV 926
Score = 68.9 bits (167), Expect = 2e-12
Identities = 49/184 (26%), Positives = 93/184 (49%), Gaps = 11/184 (5%)
Frame = +3
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQTY 76
+++ +L ++ L F G + S ++R+ G+ + +GF+ F S A R ++
Sbjct: 987 VFVKNLSESTTDDELKKTFGEFGTITSAVVMRDG-DGKSKCFGFVNFESTDDAARAVEAL 1163
Query: 77 NGTQMPGTE--------QTFRLNWASFGIGERRPDAGPDH---SIFVGDLAPDVTDYLLQ 125
NG ++ E ++ R + + +A + +++V +L + D L+
Sbjct: 1164 NGKKIDDKEWYVGKAQKKSEREHELKIKFEQSMKEAADKYQGANLYVKNLDDSIADEKLK 1343
Query: 126 ETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRISAA 185
E F + YG++ KV+ DPN G S+G GFV FS E +RA+ EMNG +++P+ ++ A
Sbjct: 1344 ELFSS-YGTITSCKVMRDPN-GVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLA 1517
Query: 186 TPKK 189
K+
Sbjct: 1518 QRKE 1529
>TC88545 similar to GP|13560783|gb|AAK30205.1 poly(A)-binding protein
{Daucus carota}, partial (35%)
Length = 866
Score = 79.0 bits (193), Expect = 1e-15
Identities = 47/167 (28%), Positives = 91/167 (54%)
Frame = +2
Query: 16 TLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQT 75
+L++GDL + V ++ L F+ G+V+S++I R+ + Q GYG++ F + A + +
Sbjct: 182 SLYVGDLDHDVTDSQLYDLFNQIGQVVSVRICRDLASQQSLGYGYVNFSNPHDAAKAMDV 361
Query: 76 YNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSV 135
N T P + R+ ++ R+ A +IF+ +L + L +TF + +G++
Sbjct: 362 LNFT--PLNNKPIRIMYSHRDPSVRKSGAA---NIFIKNLDRAIDHKALYDTF-SIFGNI 523
Query: 136 RGAKVVTDPNTGRSKGYGFVKFSDESERNRAMSEMNGVYCSTRPMRI 182
K+ D +G SKGYGFV+F +E A+ ++NG+ + +P+ +
Sbjct: 524 LSCKIAMDA-SGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYV 661
>TC77542 similar to GP|6996560|emb|CAB75429.1 oligouridylate binding protein
{Nicotiana plumbaginifolia}, partial (74%)
Length = 1840
Score = 79.0 bits (193), Expect = 1e-15
Identities = 47/143 (32%), Positives = 74/143 (50%)
Frame = +2
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVLQ 74
R++++G++ V + L F G + K+IR + YGF+++ ++A +
Sbjct: 377 RSVYVGNIHVNVTDKLLAEVFQSAGPLAGCKLIRK----EKSSYGFVDYHDRASAALAIM 544
Query: 75 TYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETFRTHYGS 134
T +G Q+ G Q ++NWA R D ++FVGDL+P+VTD L F Y +
Sbjct: 545 TLHGRQLYG--QALKVNWAY--ANSSREDTSGHFNVFVGDLSPEVTDATLFACFSV-YTT 709
Query: 135 VRGAKVVTDPNTGRSKGYGFVKF 157
A+V+ D TGRSKGYG F
Sbjct: 710 CSDARVMWDHKTGRSKGYGVCFF 778
Score = 42.0 bits (97), Expect = 2e-04
Identities = 35/118 (29%), Positives = 54/118 (45%), Gaps = 1/118 (0%)
Frame = +1
Query: 99 ERRPDAGPDHS-IFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKF 157
E P+ P ++ ++VG+L DVT L F GA V+ + KG+GFV++
Sbjct: 970 EDAPENNPSYTTVYVGNLPHDVTQAELHCQFHA-----LGAGVLEEVRVQSGKGFGFVRY 1134
Query: 158 SDESERNRAMSEMNGVYCSTRPMRISAATPKKTTGYQQNPYAAVVAAAPVPKGITKPY 215
+ E A+ NG RP+R T K + G + P A+ P+P +PY
Sbjct: 1135 NTHEEAAMAIQMANG-----RPVR--GKTMKCSWGSKPTPPG--TASNPLPPPAAQPY 1281
Score = 37.7 bits (86), Expect = 0.004
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +2
Query: 103 DAGPDHSIFVGDLAPDVTDYLLQETFRTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESE 162
DA S++VG++ +VTD LL E F++ G + G K++ YGFV + D +
Sbjct: 362 DASACRSVYVGNIHVNVTDKLLAEVFQS-AGPLAGCKLIRK----EKSSYGFVDYHDRAS 526
Query: 163 RNRAMSEMNG 172
A+ ++G
Sbjct: 527 AALAIMTLHG 556
>TC81341 similar to GP|15292697|gb|AAK92717.1 putative RNA-binding protein
{Arabidopsis thaliana}, partial (37%)
Length = 953
Score = 72.4 bits (176), Expect = 1e-13
Identities = 52/185 (28%), Positives = 87/185 (46%), Gaps = 12/185 (6%)
Frame = +2
Query: 17 LWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL--- 73
L+IG + + DE L F+ GEVI I+R++ TG+ G+GF+ F + AERV+
Sbjct: 281 LFIGGISWDTDEERLKEYFATYGEVIEAVIMRDRATGRARGFGFVVFSDPAVAERVIIDK 460
Query: 74 -----QTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPDHSIFVGDLAPDVTDYLLQETF 128
+T + + +N G + P G IFVG L +T+ + F
Sbjct: 461 HIIDGRTVEAKKAVPRDDQQNIN-RQTGSVQGSPGPGRTKKIFVGGLPSTITESDFKMYF 637
Query: 129 RTHYGSVRGAKVVTDPNTGRSKGYGFVKFSDESERNRAM----SEMNGVYCSTRPMRISA 184
+G++ V+ D NT R +G+GF+ + E +R + E+NG + + +
Sbjct: 638 -DQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVLYKTFHELNG-----KMVEVKR 799
Query: 185 ATPKK 189
A PK+
Sbjct: 800 AVPKE 814
Score = 35.4 bits (80), Expect = 0.018
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = +2
Query: 15 RTLWIGDLQYWVDENYLTHCFSHTGEVISIKIIRNKITGQPEGYGFIEFVSHSAAERVL 73
+ +++G L + E+ F G + + ++ + T +P G+GFI + S A +RVL
Sbjct: 575 KKIFVGGLPSTITESDFKMYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDRVL 751
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.319 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,040,652
Number of Sequences: 36976
Number of extensions: 87480
Number of successful extensions: 670
Number of sequences better than 10.0: 151
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 610
length of query: 230
length of database: 9,014,727
effective HSP length: 93
effective length of query: 137
effective length of database: 5,575,959
effective search space: 763906383
effective search space used: 763906383
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Medicago: description of AC146330.6