TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC144929.16 + phase: 0 
         (143 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AW257160 similar to GP|9757790|dbj| gene_id:MUA22.9~unknown prot...   157  2e-39
TC90418 similar to GP|11762174|gb|AAG40365.1 At1g17620 {Arabidop...    32  0.087
AW684351 weakly similar to GP|6016719|gb|A putative cell divisio...    32  0.11
TC87642 similar to PIR|S51590|S51590 mitochondrial processing pe...    27  3.6
TC89850 similar to GP|22748338|gb|AAN05340.1 Unknown protein {Or...    26  4.7
TC81638 homologue to GP|10177686|dbj|BAB11012. emb|CAB62594.1~ge...    26  4.7
AL378712                                                               26  6.2
BF005298                                                               26  6.2
TC76946 homologue to PIR|T06570|T06570 superoxide dismutase (EC ...    25  8.1
TC86534 homologue to SP|P12227|RPOD_PEA DNA-directed RNA polymer...    25  8.1

>AW257160 similar to GP|9757790|dbj| gene_id:MUA22.9~unknown protein
           {Arabidopsis thaliana}, partial (12%)
          Length = 764

 Score =  157 bits (396), Expect = 2e-39
 Identities = 93/160 (58%), Positives = 109/160 (68%), Gaps = 21/160 (13%)
 Frame = +3

Query: 1   MKDAAVTETQLKLISYELEKFVEADEECFYESSGRIS--FRSNVTLSRKKTDGLETEDLG 58
           MKDA VTE +LKLISYELEKF+E +EE F ESSGR S    SN+ +S K+TDG E ED G
Sbjct: 54  MKDADVTENELKLISYELEKFLETEEESFNESSGRNSRLSLSNIKISGKQTDGSEDEDCG 233

Query: 59  NKVICPLQEYLLGSSFEIREKTEVRIERAS-------------------VRETQVKQGRR 99
           NK +CPLQ YLLGSSFEI EK +VR ERAS                   V++TQVKQ  +
Sbjct: 234 NKDVCPLQGYLLGSSFEIPEKVQVRKERASLAELFQRTKTANEDCIETGVKDTQVKQAHK 413

Query: 100 SALHIIKKMSNMVLSSSKSCNTYGNTADHATSTNEKLCKV 139
           S +HI+KKM  MV  SSKSCNT  N AD +T+TN+KL KV
Sbjct: 414 SPMHIMKKMLKMVHISSKSCNTSENIAD-STTTNKKLSKV 530


>TC90418 similar to GP|11762174|gb|AAG40365.1 At1g17620 {Arabidopsis
           thaliana}, partial (9%)
          Length = 835

 Score = 32.0 bits (71), Expect = 0.087
 Identities = 18/41 (43%), Positives = 27/41 (64%), Gaps = 2/41 (4%)
 Frame = -1

Query: 60  KVICPLQEY--LLGSSFEIREKTEVRIERASVRETQVKQGR 98
           KVIC L  +  +L  +FE+R + EVR+   S+R+  VK+GR
Sbjct: 412 KVICLLGFFAVMLTLNFELRVEEEVRLR*ESLRDVTVKEGR 290


>AW684351 weakly similar to GP|6016719|gb|A putative cell division control
           protein {Arabidopsis thaliana}, partial (3%)
          Length = 554

 Score = 31.6 bits (70), Expect = 0.11
 Identities = 21/63 (33%), Positives = 35/63 (55%)
 Frame = +3

Query: 72  SSFEIREKTEVRIERASVRETQVKQGRRSALHIIKKMSNMVLSSSKSCNTYGNTADHATS 131
           S  E+R  +  R + A + E++ K  R  A HI K+M+  V SSS+  ++  +  + A S
Sbjct: 219 SDDEVRNSSRKRRKDAMIDESEEKLQRLEARHIEKRMNTQVSSSSEEDSS--DDDEGAVS 392

Query: 132 TNE 134
           T+E
Sbjct: 393 TSE 401


>TC87642 similar to PIR|S51590|S51590 mitochondrial processing peptidase (EC
           3.4.24.64) alpha-II chain precursor - potato, partial
           (75%)
          Length = 1441

 Score = 26.6 bits (57), Expect = 3.6
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -1

Query: 29  FYESSGRISFRSNVTLSRKKTDGLETEDLGNKVIC 63
           F   S   +FRS+   S+ K  G  T+   N +IC
Sbjct: 247 FSSPSSAFTFRSSSLTSQSKKAGFLTQSTSNSIIC 143


>TC89850 similar to GP|22748338|gb|AAN05340.1 Unknown protein {Oryza sativa
            (japonica cultivar-group)}, partial (34%)
          Length = 1093

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 11/29 (37%), Positives = 18/29 (61%)
 Frame = -3

Query: 95   KQGRRSALHIIKKMSNMVLSSSKSCNTYG 123
            K GR+ ++ I   +SN V+  +K+  TYG
Sbjct: 1034 KSGRKPSISISGTLSNTVIHPTKNWRTYG 948


>TC81638 homologue to GP|10177686|dbj|BAB11012.
            emb|CAB62594.1~gene_id:MUL8.6~similar to unknown protein
            {Arabidopsis thaliana}, partial (6%)
          Length = 1585

 Score = 26.2 bits (56), Expect = 4.7
 Identities = 20/88 (22%), Positives = 38/88 (42%)
 Frame = +3

Query: 32   SSGRISFRSNVTLSRKKTDGLETEDLGNKVICPLQEYLLGSSFEIREKTEVRIERASVRE 91
            SS R S +   +L+ +K   L       K++  L+        E+ E     +E  ++  
Sbjct: 1320 SSPRASLKRVSSLNSRKNKSL-------KIVSHLRNQNTARKVELDEHNNNEVEEKTLYV 1478

Query: 92   TQVKQGRRSALHIIKKMSNMVLSSSKSC 119
              + +     LH+IK  + M++ +S SC
Sbjct: 1479 VNM-ESENILLHLIKPQAMMMIHTSLSC 1559


>AL378712 
          Length = 482

 Score = 25.8 bits (55), Expect = 6.2
 Identities = 10/43 (23%), Positives = 22/43 (50%)
 Frame = -1

Query: 42  VTLSRKKTDGLETEDLGNKVICPLQEYLLGSSFEIREKTEVRI 84
           + L RK+ D +   +  +   CP+ EY+  +   +  KT++ +
Sbjct: 251 IFLKRKRNDSI*NHNYISS*FCPMVEYMKRAKIYVAHKTQLPV 123


>BF005298 
          Length = 512

 Score = 25.8 bits (55), Expect = 6.2
 Identities = 11/27 (40%), Positives = 20/27 (73%)
 Frame = -2

Query: 73  SFEIREKTEVRIERASVRETQVKQGRR 99
           +FE+RE   +RI   S +E+++++GRR
Sbjct: 406 NFEVRE---IRIGARSTKESEIRRGRR 335


>TC76946 homologue to PIR|T06570|T06570 superoxide dismutase (EC 1.15.1.1)
           (Cu-Zn) - garden pea, complete
          Length = 837

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 14/37 (37%), Positives = 18/37 (47%)
 Frame = -3

Query: 103 HIIKKMSNMVLSSSKSCNTYGNTADHATSTNEKLCKV 139
           HII   SN +   S S  T   T+  ATS +  L K+
Sbjct: 595 HIITHYSNFMHPRSSSLQTNNTTSYSATSISSSLAKL 485


>TC86534 homologue to SP|P12227|RPOD_PEA DNA-directed RNA polymerase beta'
           chain (EC 2.7.7.6) (Fragment). [Garden pea] {Pisum
           sativum}, partial (61%)
          Length = 2441

 Score = 25.4 bits (54), Expect = 8.1
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 39/129 (30%)
 Frame = +1

Query: 32  SSGRISFRSNVTLSRKKTDG-------------LETEDLGNKVICPLQEYLL-------- 70
           S+G+I F  ++    +   G             +E++D+ + VI P + +LL        
Sbjct: 730 SNGKIKFNEDLVHPTRTRHGYPAFICNIDLYVTVESDDIIHNVIIPPKSFLLVQNDQYVK 909

Query: 71  -----------GSSFEIREKTEVRIERASVRE----TQVKQGRR---SALHIIKKMSNMV 112
                       S+F ++E+    I   S  E    T V        S +HI+ K S++ 
Sbjct: 910 SEQVIAEIRAGTSTFNLKERVRKHIYSDSEGEMHWSTDVYHASEFLYSNVHILPKTSHLW 1089

Query: 113 LSSSKSCNT 121
           + S KSC +
Sbjct: 1090ILSGKSCRS 1116


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.312    0.128    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,660,675
Number of Sequences: 36976
Number of extensions: 36299
Number of successful extensions: 160
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of query: 143
length of database: 9,014,727
effective HSP length: 87
effective length of query: 56
effective length of database: 5,797,815
effective search space: 324677640
effective search space used: 324677640
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)