BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141863.8 - phase: 0
(271 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC85953 homologue to GP|3980264|emb|CAA09603.1 20S proteasome be... 549 e-157
BG585459 similar to GP|1708781|emb LMP7-like protein {Botryllus ... 267 3e-72
TC86416 homologue to PIR|T04497|T04497 multicatalytic endopeptid... 96 2e-20
TC85798 similar to PIR|T51979|T51979 multicatalytic endopeptidas... 80 6e-16
TC85797 similar to PIR|T51979|T51979 multicatalytic endopeptidas... 79 2e-15
TC77449 homologue to SP|Q9M4T8|PSA5_SOYBN Proteasome subunit alp... 70 1e-12
TC82430 weakly similar to SP|Q9LSU1|PSA5_ORYSA Proteasome subuni... 64 5e-11
TC83532 similar to PIR|T38639|T38639 proteasome component PUP2 h... 58 3e-09
TC89355 weakly similar to SP|Q9P6U7|PSB2_NEUCR Probable proteaso... 52 3e-07
TC83255 weakly similar to SP|Q9IB83|PS12_CARAU Proteasome subuni... 51 5e-07
TC76977 homologue to SP|O23708|PSA2_ARATH Proteasome subunit alp... 50 9e-07
TC86102 similar to SP|O23714|PS21_ARATH Proteasome subunit beta ... 50 1e-06
TC86103 similar to SP|O23714|PS21_ARATH Proteasome subunit beta ... 48 3e-06
TC87365 similar to SP|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha... 42 2e-04
AL384427 similar to GP|18376026|em probable 20S proteasome subun... 41 4e-04
TC80418 similar to GP|14594931|emb|CAC43326. putative beta5 prot... 41 4e-04
TC86274 similar to PIR|T51986|T51986 multicatalytic endopeptidas... 39 0.003
TC77218 similar to GP|22947842|gb|AAN07899.1 20S proteasome alph... 38 0.005
TC80417 36 0.018
BQ140453 weakly similar to GP|13991680|gb| proteasome subunit N3... 35 0.030
>TC85953 homologue to GP|3980264|emb|CAA09603.1 20S proteasome beta subunit
{Cicer arietinum}, complete
Length = 1183
Score = 549 bits (1414), Expect = e-157
Identities = 271/271 (100%), Positives = 271/271 (100%)
Frame = +3
Query: 1 MLDTTALESFPSLISHGINVAGEISAPPSFQLPNSNDFDGFVKETIQMVKPAKGTTTLAF 60
MLDTTALESFPSLISHGINVAGEISAPPSFQLPNSNDFDGFVKETIQMVKPAKGTTTLAF
Sbjct: 60 MLDTTALESFPSLISHGINVAGEISAPPSFQLPNSNDFDGFVKETIQMVKPAKGTTTLAF 239
Query: 61 IFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLH 120
IFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLH
Sbjct: 240 IFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLH 419
Query: 121 ELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRF 180
ELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRF
Sbjct: 420 ELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRF 599
Query: 181 SVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGPTGWKK 240
SVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGPTGWKK
Sbjct: 600 SVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYVGPTGWKK 779
Query: 241 LSGDDVGELHYHYNPVTPSTVEQEMVEAAGP 271
LSGDDVGELHYHYNPVTPSTVEQEMVEAAGP
Sbjct: 780 LSGDDVGELHYHYNPVTPSTVEQEMVEAAGP 872
>BG585459 similar to GP|1708781|emb LMP7-like protein {Botryllus schlosseri},
partial (74%)
Length = 643
Score = 267 bits (683), Expect = 3e-72
Identities = 127/200 (63%), Positives = 156/200 (77%)
Frame = +2
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
GTTTLAF F GV+V DSRAS G YI++Q+VKK+IEINPY+LGTMAGGA DC FW R L
Sbjct: 35 GTTTLAFKFHGGVVVCVDSRASSGSYIATQTVKKVIEINPYLLGTMAGGAGDCIFWEREL 214
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 173
G +CRL+EL NK RISV ASKLLAN +Y Y+G GLS+GTM+ GWD+TGP ++YVDS+G
Sbjct: 215 GRRCRLYELRNKERISVAAASKLLANTVYRYKGYGLSMGTMVTGWDKTGPNIFYVDSDGE 394
Query: 174 RLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYYV 233
RLKG+ FSVGSGS +AYGVLD+G+ YDMSV++A EL RR+ YHA RD ASGG ++Y+V
Sbjct: 395 RLKGDLFSVGSGSLFAYGVLDNGFDYDMSVQDALELGRRSAYHAAHRDAASGGSLNLYHV 574
Query: 234 GPTGWKKLSGDDVGELHYHY 253
GW+ + D +LH Y
Sbjct: 575 KEQGWEFIGNYDFDDLH*EY 634
>TC86416 homologue to PIR|T04497|T04497 multicatalytic endopeptidase complex
(EC 3.4.99.46) chain PBA1 [imported] - Arabidopsis
thaliana, partial (93%)
Length = 987
Score = 95.5 bits (236), Expect = 2e-20
Identities = 58/185 (31%), Positives = 94/185 (50%), Gaps = 1/185 (0%)
Frame = +3
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
GTT + + GV++ ADSR S G Y+++++ KI ++ + +G AAD Q +
Sbjct: 99 GTTIIGVTYNGGVVLGADSRTSTGVYVANRASDKITQLTDNVYVCRSGSAADSQVVSDYV 278
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGG 173
H + + +V A+ L+ + Y+ + L G ++ GWD+ G Y GG
Sbjct: 279 RYFLHQHTIQLGQPATVKVAANLVRLLAYNNKN-NLQTGLIVGGWDKYEGGQIYGVPLGG 455
Query: 174 RLKGNRFSVG-SGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASVYY 232
+ F++G SGS Y YG D +K M+ +EA +L ++A+ A RDGASGGV
Sbjct: 456 TIVQQPFAIGGSGSSYLYGFFDQAWKDGMTKDEAEDLVKKAVSLAIARDGASGGVVRTVI 635
Query: 233 VGPTG 237
+ G
Sbjct: 636 INSEG 650
>TC85798 similar to PIR|T51979|T51979 multicatalytic endopeptidase complex
(EC 3.4.99.46) chain PBB2 [imported] - Arabidopsis
thaliana, partial (94%)
Length = 1161
Score = 80.5 bits (197), Expect = 6e-16
Identities = 68/229 (29%), Positives = 109/229 (46%), Gaps = 5/229 (2%)
Frame = +1
Query: 7 LESFPSLISHGINVAGEISAPP----SFQLPNSNDFDGFVKETIQMVKPAK-GTTTLAFI 61
L SF LI ++ + PP SF L ND K+ ++ K GTT + +
Sbjct: 76 LHSFSGLIRIS-SMTKSVDLPPKGGFSFDLCRRNDM--LEKKGLKAPTYLKTGTTIVGLV 246
Query: 62 FKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHE 121
F++G+++ AD+RA+ G ++ ++ +KI + P + AG AAD + + + +LH
Sbjct: 247 FQDGIILGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHR 426
Query: 122 LANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFS 181
R V A LL L++Y+G +S ++ G D TGP L+ + G +
Sbjct: 427 YHTGRESRVVTALTLLKRHLFNYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFAT 603
Query: 182 VGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRDGASGGVASV 230
+GSGS A V +S YK +S +E +L +I F D SG V
Sbjct: 604 MGSGSLAAMSVFESKYKESLSRDEGVKLVVESICAGIFNDLGSGSNVDV 750
>TC85797 similar to PIR|T51979|T51979 multicatalytic endopeptidase complex
(EC 3.4.99.46) chain PBB2 [imported] - Arabidopsis
thaliana, partial (94%)
Length = 1542
Score = 79.0 bits (193), Expect = 2e-15
Identities = 63/212 (29%), Positives = 102/212 (47%), Gaps = 5/212 (2%)
Frame = +1
Query: 24 ISAPP----SFQLPNSNDFDGFVKETIQMVKPAK-GTTTLAFIFKEGVMVAADSRASMGG 78
+ PP SF L ND K+ ++ K GTT + +F++G+++ AD+RA+ G
Sbjct: 472 LDVPPKGGFSFDLCRRNDM--LEKKGLKSPSYLKTGTTIVGLVFQDGIILGADTRATEGP 645
Query: 79 YISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLA 138
++ ++ +KI + P + AG AAD + + + +LH R V A LL
Sbjct: 646 IVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYHTGRESRVVTALTLLK 825
Query: 139 NILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYK 198
L++Y+G +S ++ G D TGP L+ + G ++GSGS A V +S YK
Sbjct: 826 RHLFNYQG-HVSAALVLGGVDITGPHLHTIYPHGSTDTLPFATMGSGSLAAMSVFESKYK 1002
Query: 199 YDMSVEEASELARRAIYHATFRDGASGGVASV 230
+S +E +L +I F D SG V
Sbjct: 1003ESLSRDEGVKLVVESICAGIFNDLGSGSNVDV 1098
>TC77449 homologue to SP|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type 5
(EC 3.4.25.1) (20S proteasome alpha subunit E), complete
Length = 1091
Score = 69.7 bits (169), Expect = 1e-12
Identities = 50/177 (28%), Positives = 89/177 (50%), Gaps = 8/177 (4%)
Frame = +2
Query: 42 VKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAG 101
V+ I+ +K G+T + KEGV++A + R + + SV+KI+EI+ ++ M+G
Sbjct: 167 VEYAIEAIK--LGSTAIGLKTKEGVVLAVEKRIT-SPLLEPSSVEKIMEIDDHIGCAMSG 337
Query: 102 GAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG--------LSVGT 153
AD + + ++ + H + ++V ++ L ++ + G G V
Sbjct: 338 LIADARTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRF-GEGDEESMSRPFGVSL 514
Query: 154 MIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
+IAG DE GP LYY D G + N ++GSGS A L + D++++EA +A
Sbjct: 515 LIAGHDENGPSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQFNKDLTLQEAETIA 685
>TC82430 weakly similar to SP|Q9LSU1|PSA5_ORYSA Proteasome subunit alpha
type 5 (EC 3.4.25.1) (20S proteasome alpha subunit E),
partial (77%)
Length = 561
Score = 64.3 bits (155), Expect = 5e-11
Identities = 43/170 (25%), Positives = 83/170 (48%), Gaps = 10/170 (5%)
Frame = +1
Query: 55 TTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLG 114
+T + +GV++A + R + +SS S++KI+EI+ ++ M+G AD + +
Sbjct: 1 STAVGIQTSQGVILAVEKRVTSPLLVSS-SIEKIMEIDSHLGCAMSGLVADSRTMIDHAR 177
Query: 115 IKCRLHELANKRRISVTGASKLLANILY----------SYRGMGLSVGTMIAGWDETGPG 164
++ + H + +I V ++ + ++ S V ++AG DE GP
Sbjct: 178 VEAQNHTFTYEEKIKVESVTQAICDLALRFGESAHGEESIMSRPFGVALLVAGIDEKGPQ 357
Query: 165 LYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAI 214
L++ D G +K N ++GSGS A L Y +++EEA L+ + +
Sbjct: 358 LFHTDPSGTFMKYNAKAIGSGSEGAQTELQEEYHKSITLEEAETLSLKVL 507
>TC83532 similar to PIR|T38639|T38639 proteasome component PUP2 homolog -
fission yeast (Schizosaccharomyces pombe), partial (97%)
Length = 901
Score = 58.2 bits (139), Expect = 3e-09
Identities = 39/172 (22%), Positives = 81/172 (46%), Gaps = 11/172 (6%)
Frame = +3
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G+T + EGV++ + R + + + SV+KI+EI+ ++ M+G AD + +
Sbjct: 174 GSTAIGVATSEGVVLGVEKRVT-STLLETSSVEKIVEIDRHIGCAMSGLQADARSMVEHA 350
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMG-----------LSVGTMIAGWDETG 162
++ + H + V ++ + ++ + G G V +IAG+DE G
Sbjct: 351 RVESQSHAFNYNEPLRVESCTQAICDLALRF-GEGAEGEETIMSRPFGVALLIAGYDEDG 527
Query: 163 PGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAI 214
P L++ + G + + ++GSGS A L + Y +++ +A L + +
Sbjct: 528 PQLFHAEPSGTFYRYDAKAIGSGSEGAQAELQNEYHKSLTITDAETLVLKTL 683
>TC89355 weakly similar to SP|Q9P6U7|PSB2_NEUCR Probable proteasome subunit
beta type 2 (EC 3.4.25.1). {Neurospora crassa}, partial
(56%)
Length = 498
Score = 51.6 bits (122), Expect = 3e-07
Identities = 42/160 (26%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Frame = +3
Query: 58 LAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKC 117
+ + K+ V+VAAD+ A+ I K ++N +++ +G A D + +
Sbjct: 24 IGIVGKDFVLVAADATATSSVNIFKTDEDKSRDLNKHIIMLYSGEAGDAVNFAEYIQRNV 203
Query: 118 RLHELAN----KRRISVTGASKLLANILYSYRGMGLSVGTMIAGWD--ETGPGLYYVDSE 171
R + + N + + T + LA L S + V +IAG+D +T P LY++D
Sbjct: 204 RFYGIKNGIELNPKAAATFTRRELAQSLRSRKPY--MVNLLIAGYDITKTTPHLYWIDYL 377
Query: 172 GGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELAR 211
G ++ + G GS Y LD + D+++EEA L +
Sbjct: 378 GSSIEAPHVAHGYGSYYTVSFLDKHHHPDLTLEEAKILIK 497
>TC83255 weakly similar to SP|Q9IB83|PS12_CARAU Proteasome subunit beta type
1-B (EC 3.4.25.1) (20S proteasome beta 6 subunit B)
(B6-B). [Goldfish], partial (91%)
Length = 796
Score = 50.8 bits (120), Expect = 5e-07
Identities = 49/194 (25%), Positives = 82/194 (42%), Gaps = 10/194 (5%)
Frame = +3
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G T+L + ++A+D+R S G I S+ K ++ + G AAD + L
Sbjct: 99 GGTSLGIAGADFCLMASDTRKSSGYSIHSRYSPKAFKLTEKAVLATNGFAADGLALTKRL 278
Query: 114 GIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPG-LYYVDSEG 172
G K ++ A+ + +S +++LAN LY R ++ G DE G G LY D G
Sbjct: 279 GQKLEWYKHAHDKEMSTPALAQMLANTLYYKRFFPYYTFNLLGGIDEQGRGVLYSFDPVG 458
Query: 173 GRLKGNRFSVGSGSPYAYGVLDS---------GYKYDMSVEEASELARRAIYHATFRDGA 223
+ GS + LD+ + +S+E A + + A AT RD
Sbjct: 459 SMGTEICRAGGSSAALIQPFLDNQVALKNQQGAQQTPLSLETAIRITKDAFTSATERDIY 638
Query: 224 SGGVASVYYVGPTG 237
+G ++ + G
Sbjct: 639 TGDFLEIFIIRQEG 680
>TC76977 homologue to SP|O23708|PSA2_ARATH Proteasome subunit alpha type 2
(EC 3.4.25.1) (20S proteasome alpha subunit B).
[Mouse-ear cress], complete
Length = 1150
Score = 50.1 bits (118), Expect = 9e-07
Identities = 46/205 (22%), Positives = 82/205 (39%), Gaps = 4/205 (1%)
Frame = +3
Query: 29 SFQLPNSNDFDGFVKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKI 88
SF L + V+ + G T+L GV++A + + + SV+KI
Sbjct: 123 SFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLP-SILVDEASVQKI 299
Query: 89 IEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMG 148
+ P + +G D + R + + K I VT + +A ++ + G
Sbjct: 300 QLLTPNIGVVYSGMGPDFRVLVRKSRKQAEQYHRLYKEPIPVTQLVREVAAVMQEFTQSG 479
Query: 149 ----LSVGTMIAGWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVE 204
V ++AG+D+ GP LY VD G ++G A L+ Y DM ++
Sbjct: 480 GVRPFGVSLLVAGFDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTDDMELD 659
Query: 205 EASELARRAIYHATFRDGASGGVAS 229
+A A T ++G G +++
Sbjct: 660 DAVHTA-----ILTLKEGFEGQISA 719
>TC86102 similar to SP|O23714|PS21_ARATH Proteasome subunit beta type 2-1
(EC 3.4.25.1) (20S proteasome alpha subunit D1).
[Mouse-ear cress], partial (97%)
Length = 967
Score = 49.7 bits (117), Expect = 1e-06
Identities = 38/150 (25%), Positives = 70/150 (46%), Gaps = 2/150 (1%)
Frame = +3
Query: 67 MVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKR 126
+V AD+ A + + KI+ ++ + L +G D + + L++ N
Sbjct: 162 IVVADTSAVHSILVHKSNEDKIMFLDSHKLIAASGEPGDRVQFTEYIQKNVALYQFRNGI 341
Query: 127 RISVTGASKLL-ANILYSYRGMGLSVGTMIAGWD-ETGPGLYYVDSEGGRLKGNRFSVGS 184
++ A+ + + R SV ++AG+D ETGP LYY+D K + + G
Sbjct: 342 PLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGY 521
Query: 185 GSPYAYGVLDSGYKYDMSVEEASELARRAI 214
GS ++ ++D + M+VEEA +L + I
Sbjct: 522 GSYFSLSMMDRHFHSGMNVEEAIDLVDKCI 611
>TC86103 similar to SP|O23714|PS21_ARATH Proteasome subunit beta type 2-1
(EC 3.4.25.1) (20S proteasome alpha subunit D1).
[Mouse-ear cress], partial (93%)
Length = 918
Score = 48.1 bits (113), Expect = 3e-06
Identities = 27/66 (40%), Positives = 39/66 (58%), Gaps = 1/66 (1%)
Frame = +3
Query: 150 SVGTMIAGWD-ETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASE 208
SV ++AG+D ETGP LYY+D K + + G GS ++ ++D Y MSVEEA +
Sbjct: 369 SVNILLAGYDKETGPSLYYIDYIATLHKLEKGAFGYGSYFSLSMMDRHYHSGMSVEEAID 548
Query: 209 LARRAI 214
L + I
Sbjct: 549 LVDKCI 566
>TC87365 similar to SP|Q9M4T8|PSA5_SOYBN Proteasome subunit alpha type 5 (EC
3.4.25.1) (20S proteasome alpha subunit E), partial
(51%)
Length = 1431
Score = 42.0 bits (97), Expect = 2e-04
Identities = 45/164 (27%), Positives = 73/164 (44%), Gaps = 7/164 (4%)
Frame = +3
Query: 54 GTTTLAFIFKEGVMVAADSRASMG-GYISSQSVKKIIEINPYML----GTMAGGAADCQF 108
GTT + FKEGV++AA+ R + + V+ I+EI+ + T+ G A+
Sbjct: 429 GTTAIGLKFKEGVVLAAEKRITWPTSPLYPGIVQNIMEIDNNICIAVTVTVTGSIANAS- 605
Query: 109 WHRNLGIKCRLHELANK-RRISVTGASKLLANILYSYRG-MGLSVGTMIAGWDETGPGLY 166
L + R LAN R + + Y + V ++IAG D P LY
Sbjct: 606 ---KLVGEARTLALANNISRCQPMVVDSMCQKLSYELADQIHPFVVSLIAGHDNNRPSLY 776
Query: 167 YVDSEGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELA 210
Y D G + N ++G S A L+ + D+++E+A +A
Sbjct: 777 YSDPFGSFQQCNAKAIGLRSEGADRSLEEQFNQDLTLEKAETIA 908
>AL384427 similar to GP|18376026|em probable 20S proteasome subunit Y7
{Neurospora crassa}, partial (59%)
Length = 462
Score = 41.2 bits (95), Expect = 4e-04
Identities = 37/129 (28%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Frame = +2
Query: 52 AKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHR 111
A+G T++ G+++A + + S I S++K+ + P + +G D R
Sbjct: 53 AQGVTSIGIKATNGIVIATEKK-SASPLIDDSSLEKVANVCPNIGMVYSGMGPD----FR 217
Query: 112 NLGIKCRLHELANKR---RISVTGAS-KLLANILYSYRGMG----LSVGTMIAGWDETGP 163
L K R KR TG K +A+++ + G V +IAG+DETGP
Sbjct: 218 ILLSKARKAAQKYKRIYNEYPPTGILVKEVASVMQEFTQSGGVRPFGVSLLIAGYDETGP 397
Query: 164 GLYYVDSEG 172
LY VD G
Sbjct: 398 ALYQVDPSG 424
>TC80418 similar to GP|14594931|emb|CAC43326. putative beta5 proteasome
subunit {Nicotiana tabacum}, partial (10%)
Length = 1170
Score = 41.2 bits (95), Expect = 4e-04
Identities = 16/21 (76%), Positives = 18/21 (85%)
Frame = +1
Query: 96 LGTMAGGAADCQFWHRNLGIK 116
L TMAGG ADCQFWHRNL ++
Sbjct: 460 LWTMAGGVADCQFWHRNLDLR 522
>TC86274 similar to PIR|T51986|T51986 multicatalytic endopeptidase complex
(EC 3.4.99.46) chain PBG1 [imported] - Arabidopsis
thaliana, partial (92%)
Length = 1020
Score = 38.5 bits (88), Expect = 0.003
Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 3/171 (1%)
Frame = +2
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNL 113
G++ +A +K+G+++AAD S G + +SV+++ I + L +G +D Q R L
Sbjct: 170 GSSVVAIKYKDGILMAADMGGSYGSTLRYKSVERLKPIGKHSLLGASGEISDFQEIMRYL 349
Query: 114 GIKCRLHEL-ANKRRISVTGASKLLANILYSYRGM--GLSVGTMIAGWDETGPGLYYVDS 170
+ + + + L ++Y+ R L ++ G + L V
Sbjct: 350 DELILIDNMWDDGNSLGPKEVHNYLTRVMYNRRNKFNPLWNSLVLGGVKKGQKYLGTVSM 529
Query: 171 EGGRLKGNRFSVGSGSPYAYGVLDSGYKYDMSVEEASELARRAIYHATFRD 221
G + N + G G+ A +L + +++ EE +L + + +RD
Sbjct: 530 IGVNYEDNHVATGLGNHLARPILRDEWNENLTFEEGVKLLEKCMRVLLYRD 682
>TC77218 similar to GP|22947842|gb|AAN07899.1 20S proteasome alpha 6 subunit
{Nicotiana benthamiana}, partial (91%)
Length = 1236
Score = 37.7 bits (86), Expect = 0.005
Identities = 41/158 (25%), Positives = 74/158 (45%), Gaps = 5/158 (3%)
Frame = +2
Query: 42 VKETIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAG 101
V+ ++ VK +G+ + K V++A ++A+ +SS KKI +++ ++ +AG
Sbjct: 134 VEYAMEAVK--QGSAAIGLRSKTHVVLACVNKAN--SELSSHQ-KKIFKVDDHIGVAIAG 298
Query: 102 GAADCQFWHRNLGIKCRLHELANKR-----RISVTGASKLLANILYSYRGMGLSVGTMIA 156
AD + R + +C + + R+ V A K S++ VG ++A
Sbjct: 299 LTADGRVLSRYMRSECINYNYTYESPLPVGRLVVQLADKAQVCTQRSWK-RPYGVGLLVA 475
Query: 157 GWDETGPGLYYVDSEGGRLKGNRFSVGSGSPYAYGVLD 194
G DE+G LYY G + F++GS S A L+
Sbjct: 476 GLDESGAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLE 589
>TC80417
Length = 444
Score = 35.8 bits (81), Expect = 0.018
Identities = 15/21 (71%), Positives = 17/21 (80%)
Frame = +3
Query: 96 LGTMAGGAADCQFWHRNLGIK 116
L TMAGG ADCQF HRNL ++
Sbjct: 168 LWTMAGGVADCQFRHRNLDLR 230
>BQ140453 weakly similar to GP|13991680|gb| proteasome subunit N3
{Oncorhynchus mykiss}, partial (20%)
Length = 341
Score = 35.0 bits (79), Expect = 0.030
Identities = 17/39 (43%), Positives = 25/39 (63%)
Frame = +2
Query: 54 GTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEIN 92
GT+ LA FK+GV++AAD+ AS G VK++ + N
Sbjct: 218 GTSVLAAKFKDGVVIAADNLASYGSLARFTDVKRLRKFN 334
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.316 0.135 0.397
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,486,024
Number of Sequences: 36976
Number of extensions: 87868
Number of successful extensions: 442
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of query: 271
length of database: 9,014,727
effective HSP length: 95
effective length of query: 176
effective length of database: 5,502,007
effective search space: 968353232
effective search space used: 968353232
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)
Medicago: description of AC141863.8