BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC141109.8 + phase: 0
(509 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC77936 weakly similar to PIR|T52319|T52319 P-glycoprotein-like ... 233 1e-61
BG587938 homologue to GP|22655312|g putative ABC transporter {Ar... 206 2e-53
TC79211 similar to GP|4204793|gb|AAD10836.1| P-glycoprotein {Sol... 197 8e-51
TC77937 similar to GP|14715462|dbj|BAB62040. CjMDR1 {Coptis japo... 182 2e-46
TC79335 similar to GP|14715462|dbj|BAB62040. CjMDR1 {Coptis japo... 174 7e-44
AL383696 homologue to PIR|T47671|T4 P-glycoprotein-like - Arabid... 144 1e-34
TC81811 similar to GP|6671365|gb|AAF23176.1| P-glycoprotein {Gos... 142 4e-34
BG646029 similar to GP|14715462|d CjMDR1 {Coptis japonica}, part... 110 1e-28
BM813979 homologue to PIR|E85023|E85 probable P-glycoprotein-lik... 122 4e-28
TC89340 weakly similar to GP|17427488|emb|CAD14006. PROBABLE COM... 109 3e-24
AJ500056 similar to GP|23345283|g MDR-like p-glycoprotein {Arabi... 103 2e-22
AL382570 weakly similar to GP|10241621|em putative P-glycoprotei... 102 3e-22
BI264272 similar to GP|4204793|gb| P-glycoprotein {Solanum tuber... 102 3e-22
TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-lik... 101 6e-22
AW586298 SP|P27299|MSB Probable transport ATP-binding protein ms... 98 7e-21
TC90637 similar to GP|8777328|dbj|BAA96918.1 ABC transporter-lik... 89 5e-18
AW687327 similar to GP|9294508|dbj P-glycoprotein; multi-drug re... 87 1e-17
TC83850 weakly similar to GP|7300071|gb|AAF55241.1| CG4225 gene ... 86 3e-17
BQ751193 similar to GP|21622336|em probable multidrug resistance... 82 4e-16
TC78391 similar to PIR|F84919|F84919 glutathione-conjugate trans... 77 1e-14
>TC77936 weakly similar to PIR|T52319|T52319 P-glycoprotein-like protein
pgp3 [imported] - Arabidopsis thaliana, partial (32%)
Length = 1219
Score = 233 bits (595), Expect = 1e-61
Identities = 133/386 (34%), Positives = 212/386 (54%), Gaps = 1/386 (0%)
Frame = +1
Query: 77 HDVNKNAVVVLYMACASFFVCFLEGYCWTRTGERQAARMRVRYLKAVLRQEVSYFDLHVT 136
HD A+V + +A A+ + Y + G + R+R + V+ EVS+FD
Sbjct: 58 HDSKVWAIVFVAVAVATLLIIPCRFYFFGVAGGKLIQRIRNMCFEKVVHMEVSWFDEAEH 237
Query: 137 STTDVITSVSSDSLVIQDVLSDKVPNFLVNASRFLSSNIVAFALLWRLAIVGFPFMVLLV 196
S+ + +S+D+ ++ ++ D + + N + ++ +++F W+LA + LL
Sbjct: 238 SSGALGARLSTDAASVRALVGDALGLLVQNIATAIAGLVISFQASWQLAFIVLALAPLLG 417
Query: 197 IPGYMYKRISMRLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTLAAFSNALEGSVK 256
+ GY+ ++ + ++ Y +A +A A+ SIRTV SF E K + + EG +K
Sbjct: 418 LNGYVQVKVLKGFSADAKKLYEEASQVANDAVGSIRTVASFCAEKKVMELYKQKCEGPIK 597
Query: 257 LGLKQGLAKGLAIG-SNGVVYAIWSLIFYYGSIMVMYHGAKGGTVFVVGVTLAIGGLAFG 315
G+++G+ G G S ++YA+ + +FY G+ +V + VF+V L + +
Sbjct: 598 KGVRRGIISGFGFGLSFFMLYAVDACVFYAGARLVEDGKSTFSDVFLVFFALTMAAMGVS 777
Query: 316 TCFSNVRYFAEASVAGERIMEVIKRVPTIDSENMEGEIIEKVLGEVEFNNVEFVYPSRPE 375
+ V A A I ++ IDS + G +E+V G++EFN+V F YP+ +
Sbjct: 778 QSGTLVPDSTNAKSAAASIFAILDHNSQIDSSDESGMTLEEVKGDIEFNHVSFKYPTTLD 957
Query: 376 SVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWL 435
I ND CL + SGKTVALVG SGSGKSTV+SLLQRFYDP G I LDG+ I ++Q+KWL
Sbjct: 958 VQIFNDLCLNIRSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQRMQVKWL 1137
Query: 436 RSQMGLVSQEPALFATSIKENILFGR 461
R QMGLVSQEP LF ++ NI + +
Sbjct: 1138RQQMGLVSQEPILFNDTVXANIAYXK 1215
>BG587938 homologue to GP|22655312|g putative ABC transporter {Arabidopsis
thaliana}, partial (19%)
Length = 780
Score = 206 bits (524), Expect = 2e-53
Identities = 103/170 (60%), Positives = 128/170 (74%)
Frame = +3
Query: 324 FAEASVAGERIMEVIKRVPTIDSENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDFC 383
F +A VA +I +I P ID + G +E V G VE NV+F YPSRPE +ILNDF
Sbjct: 33 FTKARVAAAKIFRIIDHQPGIDRNSESGLELETVTGLVELKNVDFSYPSRPEVLILNDFS 212
Query: 384 LKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVS 443
L VP+GKT+ALVG SGSGKSTVVSL++RFYDP G+++LDG I L+LKWLR Q+GLVS
Sbjct: 213 LSVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVMLDGHDIKTLKLKWLRQQIGLVS 392
Query: 444 QEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
QEPALFAT+I+ENIL GR DA EI +AA+ +NAH+FI LP+G++TQV
Sbjct: 393 QEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGFETQV 542
>TC79211 similar to GP|4204793|gb|AAD10836.1| P-glycoprotein {Solanum
tuberosum}, partial (36%)
Length = 1667
Score = 197 bits (501), Expect = 8e-51
Identities = 115/348 (33%), Positives = 191/348 (54%), Gaps = 2/348 (0%)
Frame = +1
Query: 148 DSLVIQDVLSDKVPNFLVNASRFLSSNIVAFALLWRLAIVGFPFMVLLVIPGYMYKRISM 207
D+ ++ + D++ + N + L + F L WRLA+V ++V + K
Sbjct: 37 DANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMT 216
Query: 208 RLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTLAAFSNALEGSVKLGLKQGLAKGL 267
+ + + +A +A +AI+++RTV +F ESK + F++ LE ++ +G G
Sbjct: 217 GFSGDLEAAHAKATQLAGEAIANVRTVAAFNSESKIVRLFASNLETPLQRCFWKGQISGS 396
Query: 268 AIG-SNGVVYAIWSLIFYYGSIMVMYHGAKGGTVFVVGVTLAIGGLAFGTCFSNVRYFAE 326
G + +YA ++L +Y S +V + + V + L + + F +
Sbjct: 397 GYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIK 576
Query: 327 ASVAGERIMEVIKRVPTIDSENMEGEII-EKVLGEVEFNNVEFVYPSRPESVILNDFCLK 385
A + +++ R I+ ++ + + +++ GEVE +V+F YP+RP+ + D L+
Sbjct: 577 GGRAMRSVFDLLDRQTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLR 756
Query: 386 VPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQE 445
+ +GKT+ALVG SG GKS+V++L+QRFYDP G I++DG I K LK LR + +V QE
Sbjct: 757 IRAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRIMIDGKDIRKYNLKSLRRHISVVPQE 936
Query: 446 PALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
P LFAT+I ENI +G + AT EI++AA +NAH FIS LP GY T V
Sbjct: 937 PCLFATTIYENIAYGHDSATEAEIIEAATLANAHKFISSLPDGYKTFV 1080
>TC77937 similar to GP|14715462|dbj|BAB62040. CjMDR1 {Coptis japonica},
partial (24%)
Length = 1164
Score = 182 bits (463), Expect = 2e-46
Identities = 102/212 (48%), Positives = 132/212 (62%), Gaps = 1/212 (0%)
Frame = +3
Query: 283 FYYGSIMVMYHGAKGGTVFVVGVTLAIGGLAFGTCFSNVRYFAEASVAGERIMEVIKRVP 342
FY G+ +V + VF V L++ + S + +A A I ++ R
Sbjct: 15 FYAGARLVEDGKSSFSDVFRVFFALSMAAIGLSQSGSLLPDSTKAKSAVASIFAILDRKS 194
Query: 343 TIDSENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGK 402
ID + G +E+V GE+EF +V F YP+RP+ I D CL + SGKTVALVG SGSGK
Sbjct: 195 LIDPTDESGITLEEVKGEIEFKHVNFKYPTRPDIQIFRDLCLNIHSGKTVALVGESGSGK 374
Query: 403 STVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGR- 461
STV+SL+QRFYDP G I LDG I LQ+KWLR QMGLVSQEP LF +I+ NI +G+
Sbjct: 375 STVISLIQRFYDPDSGHITLDGKEIQSLQVKWLRQQMGLVSQEPVLFNDTIRANIAYGKG 554
Query: 462 EDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
DA+ EI+ AA+ +NAH FIS L +GYDT V
Sbjct: 555 GDASEAEIIAAAELANAHKFISSLQKGYDTVV 650
>TC79335 similar to GP|14715462|dbj|BAB62040. CjMDR1 {Coptis japonica},
partial (23%)
Length = 1135
Score = 174 bits (441), Expect = 7e-44
Identities = 96/190 (50%), Positives = 126/190 (65%), Gaps = 1/190 (0%)
Frame = +2
Query: 305 VTLAIGGLAFGTCFSNVRYFAEASVAGERIMEVIKRVPTIDSENMEGEIIEKVLGEVEFN 364
+T+A G++ + F+ A+++ A I +I + ID G ++ + GE+E
Sbjct: 8 LTMAAIGISQSSSFAPDSSKAKSATAS--IFGMIDKKSKIDPSEESGTTLDSIKGEIELR 181
Query: 365 NVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDG 424
++ F YPSRP+ I D L + SGKTVALVG SGSGKSTV++LLQRFYDP GEI LDG
Sbjct: 182 HISFKYPSRPDIQIFRDLNLTIHSGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDG 361
Query: 425 VAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGRED-ATYEEIVDAAKASNAHNFIS 483
+ I +LQLKWLR QMGLVSQEP LF +I+ NI +G+ AT EI+ AA+ +NAH FIS
Sbjct: 362 IEIRQLQLKWLRQQMGLVSQEPVLFNDTIRANIAYGKGGIATEAEIIAAAELANAHRFIS 541
Query: 484 MLPQGYDTQV 493
L QGYDT V
Sbjct: 542 GLQQGYDTIV 571
>AL383696 homologue to PIR|T47671|T4 P-glycoprotein-like - Arabidopsis
thaliana, partial (9%)
Length = 391
Score = 144 bits (362), Expect = 1e-34
Identities = 64/119 (53%), Positives = 95/119 (79%)
Frame = +1
Query: 377 VILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLR 436
++L++F LKV G+TVA+VG SGSGKST++SL++RFYDP+ G++LLDG + L+WLR
Sbjct: 1 LVLSNFSLKVNGGQTVAVVGVSGSGKSTIISLIERFYDPVAGQVLLDGRDLKLYNLRWLR 180
Query: 437 SQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQVSV 495
S +GL+ QEP +F+T+I+ENI++ R +A+ E+ +AA+ +NAH+FIS LP GYDT V +
Sbjct: 181 SHLGLIQQEPIIFSTTIRENIIYARHNASEAEMKEAARIANAHHFISSLPHGYDTHVGM 357
>TC81811 similar to GP|6671365|gb|AAF23176.1| P-glycoprotein {Gossypium
hirsutum}, partial (17%)
Length = 850
Score = 142 bits (357), Expect = 4e-34
Identities = 69/108 (63%), Positives = 88/108 (80%)
Frame = +1
Query: 386 VPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQE 445
VPSGK+VALVG SGSGKS+V+SL+ RFYDP G++L+DG I ++ LK L +GLV QE
Sbjct: 1 VPSGKSVALVGQSGSGKSSVISLILRFYDPTSGKVLIDGKDITRINLKSLTKHIGLVQQE 180
Query: 446 PALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
PALFATSI ENIL+G+E A+ E+++AAK +NAHNFIS LP+GY T+V
Sbjct: 181 PALFATSIYENILYGKEGASDSEVIEAAKLANAHNFISALPEGYSTKV 324
>BG646029 similar to GP|14715462|d CjMDR1 {Coptis japonica}, partial (16%)
Length = 680
Score = 110 bits (275), Expect(2) = 1e-28
Identities = 56/89 (62%), Positives = 67/89 (74%), Gaps = 1/89 (1%)
Frame = -3
Query: 406 VSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGR-EDA 464
+SLLQRFYDP G+I LDG I KLQLKW R QMGLVSQEP LF +I+ NI +G+ +A
Sbjct: 606 ISLLQRFYDPDSGQIKLDGTEIQKLQLKWFRQQMGLVSQEPVLFNDTIRANIAYGKGGNA 427
Query: 465 TYEEIVDAAKASNAHNFISMLPQGYDTQV 493
T E++ AA+ +NAHNFIS L QGYDT V
Sbjct: 426 TEAEVIAAAELANAHNFISSLQQGYDTIV 340
Score = 34.7 bits (78), Expect(2) = 1e-28
Identities = 17/22 (77%), Positives = 19/22 (86%)
Frame = -2
Query: 384 LKVPSGKTVALVGGSGSGKSTV 405
L + SG+TVALVG SGSGKSTV
Sbjct: 673 LTIHSGQTVALVGESGSGKSTV 608
>BM813979 homologue to PIR|E85023|E85 probable P-glycoprotein-like protein
[imported] - Arabidopsis thaliana, partial (7%)
Length = 434
Score = 122 bits (305), Expect = 4e-28
Identities = 64/97 (65%), Positives = 76/97 (77%), Gaps = 1/97 (1%)
Frame = +3
Query: 390 KTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALF 449
+TVALVG SGSGKSTV++LLQRFYDP GEI LDG+ I +LQLKWLR QMGLVSQEP LF
Sbjct: 135 QTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGIEIRQLQLKWLRQQMGLVSQEPVLF 314
Query: 450 ATSIKENILFGRED-ATYEEIVDAAKASNAHNFISML 485
+I+ NI +G+ AT EI+ AA+ +NAH FIS L
Sbjct: 315 NDTIRANIAYGKGGIATEAEIIAAAELANAHRFISGL 425
>TC89340 weakly similar to GP|17427488|emb|CAD14006. PROBABLE COMPOSITE
ATP-BINDING TRANSMEMBRANE ABC TRANSPORTER PROTEIN
{Ralstonia solanacearum}, partial (32%)
Length = 795
Score = 109 bits (272), Expect = 3e-24
Identities = 62/168 (36%), Positives = 96/168 (56%)
Frame = +1
Query: 326 EASVAGERIMEVIKRVPTIDSENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDFCLK 385
+A ++GER++E+ K PT+ ++ E + G + + NV F Y P++ L D +
Sbjct: 4 QALISGERLLELFKVKPTV-VDSPTAEPLRDCNGNIRWKNVGFNYD--PKNKALKDLDFE 174
Query: 386 VPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQE 445
G T A VG SG GKSTV L+ R+Y+ G I +DG + L + +RS +G+V Q+
Sbjct: 175 CKPGSTTAFVGESGGGKSTVFRLMFRYYNTTSGSIEIDGRDVKDLTIDSVRSYIGVVPQD 354
Query: 446 PALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
LF S+ N+ + R +AT EEI DA +A++ H+ I P YDT+V
Sbjct: 355 TTLFNESLMYNLRYARPEATDEEIYDACRAASIHDRIMSFPDRYDTKV 498
>AJ500056 similar to GP|23345283|g MDR-like p-glycoprotein {Arabidopsis
thaliana}, partial (10%)
Length = 380
Score = 103 bits (256), Expect = 2e-22
Identities = 46/124 (37%), Positives = 76/124 (61%)
Frame = -1
Query: 273 GVVYAIWSLIFYYGSIMVMYHGAKGGTVFVVGVTLAIGGLAFGTCFSNVRYFAEASVAGE 332
G+ W+L+F+Y + + GG F + +GG++ G FSN+ F++ AG
Sbjct: 374 GIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGY 195
Query: 333 RIMEVIKRVPTIDSENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDFCLKVPSGKTV 392
++ME+IK+ PTI + +G+ + +V G +EF +V F YPSRP+ +I +F + P+GKTV
Sbjct: 194 KLMEIIKQKPTIVEDLSDGKCLAEVNGNIEFKDVSFSYPSRPDVMIFQNFSIFFPAGKTV 15
Query: 393 ALVG 396
A+VG
Sbjct: 14 AVVG 3
>AL382570 weakly similar to GP|10241621|em putative P-glycoprotein {Oryza
sativa}, partial (17%)
Length = 481
Score = 102 bits (255), Expect = 3e-22
Identities = 47/92 (51%), Positives = 67/92 (72%)
Frame = +3
Query: 402 KSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGR 461
KS+V++LL +FYDP+ G++L+DG + + L+WLR+Q+GLV QEP LF SI+ENI +G
Sbjct: 3 KSSVLALLLKFYDPVVGKVLIDGKDLREYNLRWLRTQIGLVQQEPLLFNCSIRENICYGN 182
Query: 462 EDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
A EIV+ A+ +N H F+S LP GY+T V
Sbjct: 183 NGAFESEIVEVAREANIHEFVSNLPNGYNTVV 278
>BI264272 similar to GP|4204793|gb| P-glycoprotein {Solanum tuberosum},
partial (5%)
Length = 678
Score = 102 bits (255), Expect = 3e-22
Identities = 49/77 (63%), Positives = 63/77 (81%)
Frame = +3
Query: 418 GEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASN 477
G+++LDG I L+LKWLR Q+GLVSQEPALFAT+I+ENIL GR DA EI +AA+ +N
Sbjct: 18 GQVMLDGHDIKTLKLKWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVAN 197
Query: 478 AHNFISMLPQGYDTQVS 494
AH+FI LP+G++TQVS
Sbjct: 198 AHSFIIKLPEGFETQVS 248
>TC78215 similar to GP|10177549|dbj|BAB10828. ABC transporter-like protein
{Arabidopsis thaliana}, partial (36%)
Length = 1176
Score = 101 bits (252), Expect = 6e-22
Identities = 54/121 (44%), Positives = 79/121 (64%), Gaps = 1/121 (0%)
Frame = +1
Query: 374 PESVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLK 433
P ++L +K+ G VALVG SG GK+T+ +L++RFYDP G IL++GV + ++ K
Sbjct: 34 P*YMVLKGINIKLQPGSKVALVGPSGGGKTTIANLIERFYDPTKGNILVNGVPLVEISHK 213
Query: 434 WLRSQMGLVSQEPALFATSIKENILFGREDATYE-EIVDAAKASNAHNFISMLPQGYDTQ 492
L ++ +VSQEP LF SI+ENI +G + + +I +AAK +NAH FIS P+ Y T
Sbjct: 214 HLHRKISIVSQEPTLFNCSIEENIAYGFDGKIEDADIENAAKMANAHEFISNFPEKYKTF 393
Query: 493 V 493
V
Sbjct: 394 V 396
>AW586298 SP|P27299|MSB Probable transport ATP-binding protein msbA.
{Escherichia coli O157:H7}, partial (19%)
Length = 337
Score = 98.2 bits (243), Expect = 7e-21
Identities = 55/104 (52%), Positives = 70/104 (66%), Gaps = 3/104 (2%)
Frame = +2
Query: 344 IDSENMEGE---IIEKVLGEVEFNNVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSGS 400
+DSE + E +IE+ G+VEF NV F YP R + N LK+P+GKTVALVG SGS
Sbjct: 23 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRN-INLKIPAGKTVALVGRSGS 199
Query: 401 GKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQ 444
GKST+ SL+ RFYD GEIL+DG + + L LR+Q+ LVSQ
Sbjct: 200 GKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQ 331
>TC90637 similar to GP|8777328|dbj|BAA96918.1 ABC transporter-like protein
{Arabidopsis thaliana}, partial (41%)
Length = 916
Score = 88.6 bits (218), Expect = 5e-18
Identities = 63/185 (34%), Positives = 100/185 (54%), Gaps = 7/185 (3%)
Frame = +1
Query: 287 SIMVMYHGAKGGTVFVVGVTLAIGGLAFGTCF------SNVRYFAEASVAGERIMEVIKR 340
++++ HG GT+ VG + + GL F S R ++ + + + ++++
Sbjct: 331 AMVLCSHGIMNGTM-TVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKAMFQLLEE 507
Query: 341 VPTI-DSENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDFCLKVPSGKTVALVGGSG 399
I D EN + G+++F NV F Y + E IL+ L VP+GK+VA+VG SG
Sbjct: 508 KADIKDKENAKPLRFNG--GKIQFQNVHFSYLT--ERKILDGISLLVPAGKSVAIVGTSG 675
Query: 400 SGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILF 459
SGKST++ +L RF+DP G I +D I + L+ LR +G+V Q+ LF +I NI +
Sbjct: 676 SGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHY 855
Query: 460 GREDA 464
GR A
Sbjct: 856 GRLSA 870
>AW687327 similar to GP|9294508|dbj P-glycoprotein; multi-drug resistance
related; ABC transporter-like protein {Arabidopsis
thaliana}, partial (7%)
Length = 334
Score = 87.4 bits (215), Expect = 1e-17
Identities = 46/101 (45%), Positives = 65/101 (63%), Gaps = 2/101 (1%)
Frame = +2
Query: 325 AEASVAGERIMEVIKRVPTIDS--ENMEGEIIEKVLGEVEFNNVEFVYPSRPESVILNDF 382
A++S A + E++ R I E G +EK+ G++E NV+F YPSR ++ IL F
Sbjct: 29 AKSSTAVASVFEILDRQSLIPKAGEETNGIKLEKLSGKIELKNVDFSYPSRAKTPILRKF 208
Query: 383 CLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLD 423
CL+V GK+V LVG SG GKSTV++L+QRFYD G + +D
Sbjct: 209 CLEVRPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKVD 331
>TC83850 weakly similar to GP|7300071|gb|AAF55241.1| CG4225 gene product
{Drosophila melanogaster}, partial (23%)
Length = 816
Score = 86.3 bits (212), Expect = 3e-17
Identities = 47/115 (40%), Positives = 66/115 (56%)
Frame = +2
Query: 379 LNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILLDGVAIHKLQLKWLRSQ 438
L+ V G A+VG SGSGKST + LL RFYD G + +DG I L+L LR
Sbjct: 26 LDGVSFTVAPGTKTAIVGESGSGKSTCLKLLFRFYDVQEGAVTVDGHDIKHLKLDSLRRN 205
Query: 439 MGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQV 493
+G+V Q+ LF +I N+L+ A+ ++ +A KA+N H I P GY+T+V
Sbjct: 206 IGVVPQDTVLFNATIMYNLLYANPKASQADVFEACKAANIHERILNFPDGYETKV 370
>BQ751193 similar to GP|21622336|em probable multidrug resistance protein 2
{Neurospora crassa}, partial (33%)
Length = 797
Score = 82.4 bits (202), Expect = 4e-16
Identities = 73/281 (25%), Positives = 128/281 (44%), Gaps = 16/281 (5%)
Frame = +3
Query: 145 VSSDSLVIQDVLSDKVPNFLVNASRFLSSNIVAFALLWRLA--IVGFPFMVL--LVIPGY 200
+SSD+ ++ ++ + + L R L S F ++ L+ + G ++L + + +
Sbjct: 6 LSSDTSLVGKSITQNISDGL----RALFSGGAGFVVMVWLSPKLTGLLLIMLPPVAVGAF 173
Query: 201 MYKRISMRLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTLAAFSNALEGSVKLGLK 260
Y R +++ I++ IAE+ + +++T +FVGE + +A ++ ++ LG K
Sbjct: 174 FYGRAIRNVSKGIQKNLGTLTKIAEERLGNVKTSQAFVGEVQEVARYNKQVKTIFALGRK 353
Query: 261 QGLAKGLAIGSNGVVYAIWSLIFYYGSIMVMYHGAKGGTVFVVGVTLAIGGLA---FGTC 317
+ S G W+ G++ ++ GG FV T+ +G L T
Sbjct: 354 ESTIAATFFASTG-----WA-----GNMTILSMLIVGGN-FVRNGTMTLGDLTSFMMYTA 500
Query: 318 FSNVRYFAEASV---------AGERIMEVIKRVPTIDSENMEGEIIEKVLGEVEFNNVEF 368
F+ F +S A R+ E+ R P I G +E G + F NV F
Sbjct: 501 FAGSSLFGLSSFYSELMKGVGAASRLFELQDRKPGISQT--VGLKVESAQGPIRFFNVSF 674
Query: 369 VYPSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLL 409
YP+RP I ++ ++PSG V +VG SG G+STV LL
Sbjct: 675 AYPTRPAVRIFHELNFEIPSGSNVCVVGPSGGGQSTVAGLL 797
>TC78391 similar to PIR|F84919|F84919 glutathione-conjugate transporter
AtMRP4 [imported] - Arabidopsis thaliana, partial (17%)
Length = 1265
Score = 77.4 bits (189), Expect = 1e-14
Identities = 39/100 (39%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Frame = +2
Query: 359 GEVEFNNVEFVY-PSRPESVILNDFCLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIG 417
G +E NN++ Y P+ P ++L L + G+ V +VG +GSGKST++ +L R +P
Sbjct: 86 GTIELNNLQVRYRPTTP--LVLKGVSLTIEGGEKVGVVGRTGSGKSTLIQVLFRLIEPSA 259
Query: 418 GEILLDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENI 457
G+I++DG+ I + L LRS+ G++ QEP LF +++ NI
Sbjct: 260 GKIIIDGINISNVGLHDLRSRFGIIPQEPVLFQGTVRTNI 379
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,343,617
Number of Sequences: 36976
Number of extensions: 180914
Number of successful extensions: 1126
Number of sequences better than 10.0: 92
Number of HSP's better than 10.0 without gapping: 1107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of query: 509
length of database: 9,014,727
effective HSP length: 100
effective length of query: 409
effective length of database: 5,317,127
effective search space: 2174704943
effective search space used: 2174704943
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Medicago: description of AC141109.8