BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC139344.7 + phase: 1 /pseudo
(478 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI309245 weakly similar to PIR|D96767|D967 unknown protein F2P9.... 400 e-112
TC79875 similar to PIR|D96767|D96767 unknown protein F2P9.16 [im... 45 5e-05
TC84863 similar to GP|23498480|emb|CAD50431. hypothetical protei... 31 1.2
TC85390 homologue to SP|P27322|HS72_LYCES Heat shock cognate 70 ... 30 1.6
TC82594 similar to GP|5262776|emb|CAB45881.1 berberine bridge en... 30 2.7
TC86286 similar to GP|6862923|gb|AAF30312.1| unknown protein {Ar... 30 2.7
CB893172 homologue to PIR|T45642|T45 FtsH metalloproteinase-like... 29 3.5
TC81928 homologue to SP|Q43086|PYB1_PEA Aspartate carbamoyltrans... 29 4.5
TC85712 similar to GP|18643341|gb|AAL76272.1 transcription facto... 28 5.9
TC92827 weakly similar to SP|P50162|TRN1_DATST Tropinone reducta... 28 5.9
BQ139527 similar to GP|19034047|gb| putative dioxygenase {Oryza ... 28 7.7
TC77719 similar to GP|21593260|gb|AAM65209.1 unknown {Arabidopsi... 28 7.7
TC92037 similar to GP|6041790|gb|AAF02110.1| putative NADPH-ferr... 24 8.8
>BI309245 weakly similar to PIR|D96767|D967 unknown protein F2P9.16
[imported] - Arabidopsis thaliana, partial (12%)
Length = 683
Score = 400 bits (1027), Expect = e-112
Identities = 205/226 (90%), Positives = 213/226 (93%)
Frame = +1
Query: 88 RMRTSAIVRVEALVSDLVSRTLRFRNLGNDLQDRVLLQCVTLGMTRTISFSSHSSLFVCL 147
RMRTSAI+RVEALVSDLVSRTLRFRN GNDLQDR+LLQCVTLGMTRTISFS+HSSLFVCL
Sbjct: 4 RMRTSAIIRVEALVSDLVSRTLRFRNSGNDLQDRLLLQCVTLGMTRTISFSNHSSLFVCL 183
Query: 148 GLSLLTRILPLPRLYESVFELSPSSGGLKVNEIKEHPDNILFKEAGAVTGIFCNLYVLAD 207
GLSLLT +LPLPRLYESVFELSPSSGGLKVNEIKEH DNILFKEAGAVTG+FCN YVLAD
Sbjct: 184 GLSLLTEMLPLPRLYESVFELSPSSGGLKVNEIKEHLDNILFKEAGAVTGVFCNQYVLAD 363
Query: 208 EENKNIVENLIWEYYRDIYFGHRKVVMDLKGKEDELLTNFEKTAESAFLMVVVFALSVTK 267
EENKNIVENLIWEY RDIYFGHRKV LKGKED LLT+FEK AESAFLMVVVFAL+ TK
Sbjct: 364 EENKNIVENLIWEYCRDIYFGHRKVATHLKGKEDVLLTDFEKIAESAFLMVVVFALAGTK 543
Query: 268 HKLSSTFAQEIQTEISLKILVSLSCVEYFRHVRLPEYMETIRKVTA 313
HKLSS FAQEIQTE+SLKILVSLSCVEYFRHVRLPEYMETIRKV A
Sbjct: 544 HKLSSKFAQEIQTEVSLKILVSLSCVEYFRHVRLPEYMETIRKVIA 681
>TC79875 similar to PIR|D96767|D96767 unknown protein F2P9.16 [imported] -
Arabidopsis thaliana, partial (6%)
Length = 747
Score = 45.4 bits (106), Expect = 5e-05
Identities = 21/26 (80%), Positives = 22/26 (83%)
Frame = +3
Query: 3 LFVWNLGKG*WWASRSCCSWTYGSLF 28
LFV NLGK * WASR CCSWT+GSLF
Sbjct: 669 LFV*NLGKR**WASR*CCSWTHGSLF 746
>TC84863 similar to GP|23498480|emb|CAD50431. hypothetical protein;
hypothetical protein with PP2C domain {Plasmodium
falciparum 3D7}, partial (0%)
Length = 838
Score = 30.8 bits (68), Expect = 1.2
Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 3/98 (3%)
Frame = -3
Query: 154 RILPLPRLYESVFELSPSSGGLKVNEIKEHPDNILFKEAGAVTGIFCNLYV---LADEEN 210
R LPLP + + L P G +K + P N+LFK G + IF NL V L
Sbjct: 824 RCLPLPFYFPVL--LQPDKGTIKPS----FPSNLLFKSLGRLLEIFPNLTVALKLGGCRY 663
Query: 211 KNIVENLIWEYYRDIYFGHRKVVMDLKGKEDELLTNFE 248
+ ++ IW + + H ++ DE+ N E
Sbjct: 662 SKVGQSFIW**FWPCHASHSYCIVGFH-SVDEIYDNRE 552
>TC85390 homologue to SP|P27322|HS72_LYCES Heat shock cognate 70 kDa protein
2. [Tomato] {Lycopersicon esculentum}, complete
Length = 2278
Score = 30.4 bits (67), Expect = 1.6
Identities = 14/34 (41%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = -2
Query: 150 SLLTRILPLPR-LYESVFELSPSSGGLKVNEIKE 182
+LL R+ LP+ ++ +F+ SPS G +KVN +K+
Sbjct: 1113 TLLNRLHTLPKQIHVELFKTSPSDGSVKVNTLKQ 1012
>TC82594 similar to GP|5262776|emb|CAB45881.1 berberine bridge enzyme-like
protein {Arabidopsis thaliana}, partial (26%)
Length = 698
Score = 29.6 bits (65), Expect = 2.7
Identities = 10/16 (62%), Positives = 13/16 (80%)
Frame = +2
Query: 5 VWNLGKG*WWASRSCC 20
+W LGK W++SRSCC
Sbjct: 599 IWYLGKETWFSSRSCC 646
>TC86286 similar to GP|6862923|gb|AAF30312.1| unknown protein {Arabidopsis
thaliana}, partial (91%)
Length = 1729
Score = 29.6 bits (65), Expect = 2.7
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +1
Query: 135 ISFSSHSSLFVCLGLSLLTRILPLPRLYES 164
ISFS SS F+ L LSL + +P PR+ S
Sbjct: 4 ISFSVFSSSFILLSLSLSPKFVPNPRISSS 93
>CB893172 homologue to PIR|T45642|T45 FtsH metalloproteinase-like protein -
Arabidopsis thaliana, partial (25%)
Length = 661
Score = 29.3 bits (64), Expect = 3.5
Identities = 23/87 (26%), Positives = 41/87 (46%)
Frame = +3
Query: 59 FVVFMSGIGVLRVTDRYASSTGMKVDVLTRMRTSAIVRVEALVSDLVSRTLRFRNLGNDL 118
FV G+G RV D +A + + +I+ ++ + + SR +FR +GND
Sbjct: 192 FVELYVGMGASRVRDLFARA---------KKEAPSIIFIDEIDAVAKSRDGKFRIVGNDE 344
Query: 119 QDRVLLQCVTLGMTRTISFSSHSSLFV 145
+++ L Q +T F S+S + V
Sbjct: 345 REQTLNQL----LTEMDGFDSNSPVIV 413
>TC81928 homologue to SP|Q43086|PYB1_PEA Aspartate carbamoyltransferase 1
chloroplast precursor (EC 2.1.3.2) (Aspartate
transcarbamylase 1), partial (60%)
Length = 961
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/42 (40%), Positives = 19/42 (44%)
Frame = +3
Query: 6 WNLGKG*WWASRSCCSWTYGSLFV*LGCVEFDQFQIFGQSGC 47
W G+ * WA R C W GSL L C + IF S C
Sbjct: 834 WKTGRN*SWACRRPC*WQNGSLTCILTCQVP*RENIFRLS*C 959
>TC85712 similar to GP|18643341|gb|AAL76272.1 transcription factor EIL1 {Vigna
radiata}, partial (90%)
Length = 2456
Score = 28.5 bits (62), Expect = 5.9
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -1
Query: 10 KG*WWASRSCCSWTYGSLFV*LGCVEFDQFQIFGQSGCFC 49
+G W ASR+C SW Y + * +E +F G C
Sbjct: 1097 EGIWTASRACESWLYQETYA**QQLEHRLSMLFSSHGVSC 978
>TC92827 weakly similar to SP|P50162|TRN1_DATST Tropinone reductase-I (EC
1.1.1.206) (TR-I) (Tropine dehydrogenase). [Jimsonweed
Common thornapple], partial (41%)
Length = 500
Score = 28.5 bits (62), Expect = 5.9
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 134 TISFSSHSSLFVCLGL-SLLTRILPLPRLYESVFEL 168
TIS + +SS+F+C+ + +L TRIL P E+ F +
Sbjct: 416 TISSAVYSSIFLCVHVAALFTRILSFP*KIEATFSI 309
>BQ139527 similar to GP|19034047|gb| putative dioxygenase {Oryza sativa
(japonica cultivar-group)}, partial (14%)
Length = 335
Score = 28.1 bits (61), Expect = 7.7
Identities = 12/45 (26%), Positives = 24/45 (52%)
Frame = -3
Query: 3 LFVWNLGKG*WWASRSCCSWTYGSLFV*LGCVEFDQFQIFGQSGC 47
+FVW + + W+ SC + ++ + F + C Q++I + GC
Sbjct: 141 IFVWLMME*GWYLLNSCINKSFYTCFCFIKCYALTQYRIKVRLGC 7
>TC77719 similar to GP|21593260|gb|AAM65209.1 unknown {Arabidopsis
thaliana}, partial (71%)
Length = 1032
Score = 28.1 bits (61), Expect = 7.7
Identities = 10/21 (47%), Positives = 15/21 (70%)
Frame = -1
Query: 450 HLPAGSPTTFYCIHSLVEKAN 470
H SP++F+C+HSL+ K N
Sbjct: 330 HFLLPSPSSFFCLHSLLMKVN 268
>TC92037 similar to GP|6041790|gb|AAF02110.1| putative
NADPH-ferrihemoprotein reductase {Arabidopsis thaliana},
partial (14%)
Length = 468
Score = 23.9 bits (50), Expect(2) = 8.8
Identities = 8/30 (26%), Positives = 17/30 (56%)
Frame = -1
Query: 299 VRLPEYMETIRKVTAIVKKNENACTFFVNS 328
+R+ +E + K++ + + C FF+NS
Sbjct: 90 IRIASILEQVLKLSLFSEPDMEFCNFFINS 1
Score = 22.3 bits (46), Expect(2) = 8.8
Identities = 11/23 (47%), Positives = 16/23 (68%)
Frame = -3
Query: 271 SSTFAQEIQTEISLKILVSLSCV 293
SSTF+ +T S++ + SLSCV
Sbjct: 220 SSTFSFTSKTFRSIQCVTSLSCV 152
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.326 0.140 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,291,960
Number of Sequences: 36976
Number of extensions: 223655
Number of successful extensions: 1556
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1556
length of query: 478
length of database: 9,014,727
effective HSP length: 100
effective length of query: 378
effective length of database: 5,317,127
effective search space: 2009874006
effective search space used: 2009874006
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.7 bits)
Medicago: description of AC139344.7