TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC137509.6 - phase: 0 /pseudo
         (85 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BF003873 similar to GP|14715222|em putative polyprotein {Cicer a...    65  5e-12
BG644699 similar to PIR|T07863|T078 probable polyprotein - pinea...    48  6e-07
BG644743                                                               33  0.025
BG454871 weakly similar to GP|10140673|g putative gag-pol polypr...    32  0.043
TC77760 similar to GP|10177333|dbj|BAB10682. 2-oxoglutarate dehy...    26  3.1
TC79377 similar to GP|10185114|emb|CAC08564. wound-induced GSK-3...    25  5.3
TC77895 similar to GP|18087577|gb|AAL58919.1 AT4g00150/F6N15_20 ...    24  9.0

>BF003873 similar to GP|14715222|em putative polyprotein {Cicer arietinum},
          partial (82%)
          Length = 559

 Score = 65.1 bits (157), Expect = 5e-12
 Identities = 29/45 (64%), Positives = 35/45 (77%)
 Frame = +2

Query: 36 GVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
          GVGRALK +K T  F+GP+ + E+VG VAYR+ LPP L NLHDVF
Sbjct: 2  GVGRALKSKKLTVRFIGPYQISERVGTVAYRVGLPPHLLNLHDVF 136


>BG644699 similar to PIR|T07863|T078 probable polyprotein - pineapple
          retrotransposon dea1 (fragment), partial (5%)
          Length = 231

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
 Frame = +2

Query: 25 DHVFLRVNPMT-GVGRALKCRKSTPCFVGPFDVIEKVGVVAYRIALPPSLSNLHDVF 80
          + V L+V P   G  R  K  K +  ++GPF+VI+++G VAY +ALPP LS +H VF
Sbjct: 2  EQVLLKVLPTERGDCRFGKRGKLSLRYIGPFEVIKRIGEVAYELALPPGLSGVHPVF 172


>BG644743 
          Length = 122

 Score = 32.7 bits (73), Expect = 0.025
 Identities = 15/38 (39%), Positives = 24/38 (62%)
 Frame = +1

Query: 22 QVGDHVFLRVNPMTGVGRALKCRKSTPCFVGPFDVIEK 59
          +V   V+  ++PM GV R  K  K +PC+VG +DV+ +
Sbjct: 1  KVRSWVY*TISPMNGVMRFGKKEKFSPCYVGLYDVLNQ 114


>BG454871 weakly similar to GP|10140673|g putative gag-pol polyprotein {Oryza
           sativa (japonica cultivar-group)}, partial (7%)
          Length = 674

 Score = 32.0 bits (71), Expect = 0.043
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 4   SQSRQKSYHDKRRKDIEYQVGDHVFLRVNPMTGVGRALK 42
           +Q   K   DK+R+  E+Q+G+HV +++ P      AL+
Sbjct: 388 AQQTMKHQADKKRRHFEFQLGEHVLVKLQPYQQSSVALR 504


>TC77760 similar to GP|10177333|dbj|BAB10682. 2-oxoglutarate dehydrogenase  E1
            component {Arabidopsis thaliana}, partial (61%)
          Length = 2283

 Score = 25.8 bits (55), Expect = 3.1
 Identities = 13/21 (61%), Positives = 15/21 (70%), Gaps = 2/21 (9%)
 Frame = -2

Query: 31   VNPMTGVGRALKCRKS--TPC 49
            V P+  +GRALKCR S  TPC
Sbjct: 1424 VPPVV*LGRALKCRVS*TTPC 1362


>TC79377 similar to GP|10185114|emb|CAC08564. wound-induced GSK-3-like protein
            {Medicago sativa}, partial (91%)
          Length = 1789

 Score = 25.0 bits (53), Expect = 5.3
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 27   VFLRVNPMTGVGRALKCRKSTPCFVG 52
            ++L ++P T     LK +KSTPC +G
Sbjct: 1574 LWLSIHPKTNFAM-LKTKKSTPCMLG 1500


>TC77895 similar to GP|18087577|gb|AAL58919.1 AT4g00150/F6N15_20
           {Arabidopsis thaliana}, partial (41%)
          Length = 2591

 Score = 24.3 bits (51), Expect = 9.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 3   ASQSRQKSYHDKRRKDIEYQVGDHVFL 29
           A + + K+YH  + KD+E+++G   +L
Sbjct: 490 APRPKIKTYHKLKVKDVEWRIGRVCYL 570


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.324    0.139    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,635,773
Number of Sequences: 36976
Number of extensions: 30109
Number of successful extensions: 104
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of query: 85
length of database: 9,014,727
effective HSP length: 61
effective length of query: 24
effective length of database: 6,759,191
effective search space: 162220584
effective search space used: 162220584
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)