BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC134242.10 + phase: 0
(164 letters)
Database: MTGI
36,976 sequences; 27,044,181 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 253 3e-68
TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-bi... 248 8e-67
AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich prot... 214 1e-56
AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding pr... 188 7e-49
TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 184 1e-47
TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding pr... 184 2e-47
TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding pr... 129 7e-31
TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein ... 124 1e-30
TC79678 homologue to GP|2674201|gb|AAC61786.1| glycine-rich RNA-... 112 7e-26
BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding prot... 110 2e-25
TC84935 similar to PIR|G96631|G96631 probable RNA-binding protei... 108 7e-25
TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity... 100 2e-22
BQ151059 similar to GP|7291525|gb|A CG9888-PA {Drosophila melano... 99 1e-21
TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - ... 97 4e-21
TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garde... 93 4e-20
BG586379 similar to PIR|T03442|T034 glycine-rich protein - rice,... 92 7e-20
AL388260 weakly similar to SP|Q08937|ROC2_ 29 kDa ribonucleoprot... 91 2e-19
CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein c... 90 5e-19
TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30... 89 1e-18
TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein... 87 2e-18
>TC76556 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 754
Score = 253 bits (645), Expect = 3e-68
Identities = 133/167 (79%), Positives = 138/167 (81%), Gaps = 10/167 (5%)
Frame = +2
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
ADVEYRCFVGGLAWATD+EALEKAFSQYGEI+DSKIINDRETGRSRGFGFVTFA+EKSM
Sbjct: 89 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 268
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGS--GGGGGRGGGGYGGGGGGYGGGGRREGGYNRSS 121
DAIE MNGQD+DGRNITVN+AQSRGS GGGGGRGGGGYGGGGGGYGG R GY
Sbjct: 269 DAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERR---GY---- 427
Query: 122 GGGGGYGGGGGGGY------GGGRDRGYGDD--GGSRYSRGGGGDGG 160
GGGGGYGGGGGGGY GGG RG G GG YSR GGGDGG
Sbjct: 428 GGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGGGGYSR-GGGDGG 565
>TC89001 similar to GP|5726567|gb|AAD48471.1| glycine-rich RNA-binding
protein {Glycine max}, partial (90%)
Length = 488
Score = 248 bits (633), Expect = 8e-67
Identities = 123/152 (80%), Positives = 133/152 (86%), Gaps = 8/152 (5%)
Frame = +3
Query: 1 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEK 60
M S+DVEYRCFVGGLAWATDS+ALE+AFS++GEI DSK+INDRETGRSRGFGFVTFA+EK
Sbjct: 30 MGSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEK 209
Query: 61 SMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGG-------RGGGGYGGGGGGY-GGGGR 112
SMRDAIE MNGQD+DGRNITVNEAQSRGSGGGG GGGGYGGGGGGY GGGGR
Sbjct: 210 SMRDAIEEMNGQDIDGRNITVNEAQSRGSGGGGRGGGGGGYGGGGGYGGGGGGYGGGGGR 389
Query: 113 REGGYNRSSGGGGGYGGGGGGGYGGGRDRGYG 144
R+GGY+R SGGGGGYGGGG GYGGG GYG
Sbjct: 390 RDGGYSR-SGGGGGYGGGGDRGYGGGGGGGYG 482
>AL374421 similar to PIR|S59529|S59 RNA-binding glycine-rich protein-1
(RGP-1c) - wood tobacco, partial (62%)
Length = 310
Score = 214 bits (546), Expect = 1e-56
Identities = 103/103 (100%), Positives = 103/103 (100%)
Frame = +2
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR
Sbjct: 2 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 181
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGG 106
DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGG
Sbjct: 182 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGG 310
>AL371197 homologue to GP|6273331|gb| glycine-rich RNA binding protein
{Medicago sativa}, complete
Length = 437
Score = 188 bits (478), Expect = 7e-49
Identities = 91/105 (86%), Positives = 96/105 (90%)
Frame = +1
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMR 63
ADVEYRCFVGGLAWATD+EALEKAFSQYGEI+DSKIINDRETGRSRGFGFVTFA+EKSM
Sbjct: 46 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMN 225
Query: 64 DAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYG 108
DAIE MNGQD+DGRNITVN+AQSRG GGGGG G GG G GGG G
Sbjct: 226 DAIEAMNGQDLDGRNITVNQAQSRGIGGGGGGGPGGCGYRGGGVG 360
>TC76561 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 1054
Score = 184 bits (467), Expect = 1e-47
Identities = 100/133 (75%), Positives = 104/133 (78%), Gaps = 10/133 (7%)
Frame = +1
Query: 38 KIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGS--GGGGGR 95
+IINDRETGRSRGFGFVTFA+EKSM DAIE MNGQD+DGRNITVN+AQSRGS GGGGGR
Sbjct: 445 QIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGR 624
Query: 96 GGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGY------GGGRDRGYGDD--G 147
GGGGYGGGGGGYGG R GY GGGGGYGGGGGGGY GGG RG G G
Sbjct: 625 GGGGYGGGGGGYGGERR---GY----GGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYG 783
Query: 148 GSRYSRGGGGDGG 160
G YSR GGGDGG
Sbjct: 784 GGGYSR-GGGDGG 819
Score = 74.7 bits (182), Expect = 2e-14
Identities = 33/36 (91%), Positives = 36/36 (99%)
Frame = +1
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKI 39
ADVEYRCFVGGLAWATD+EALEKAFSQYGEI+DSK+
Sbjct: 28 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKV 135
>TC76557 similar to PIR|S71779|S71779 glycine-rich RNA-binding protein GRP1
- wheat, partial (95%)
Length = 912
Score = 184 bits (466), Expect = 2e-47
Identities = 100/132 (75%), Positives = 103/132 (77%), Gaps = 10/132 (7%)
Frame = +1
Query: 39 IINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGS--GGGGGRG 96
IINDRETGRSRGFGFVTFA+EKSM DAIE MNGQD+DGRNITVN+AQSRGS GGGGGRG
Sbjct: 352 IINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGRG 531
Query: 97 GGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGY------GGGRDRGYGDD--GG 148
GGGYGGGGGGYGG R GY GGGGGYGGGGGGGY GGG RG G GG
Sbjct: 532 GGGYGGGGGGYGGERR---GY----GGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGG 690
Query: 149 SRYSRGGGGDGG 160
YSR GGGDGG
Sbjct: 691 GGYSR-GGGDGG 723
Score = 74.7 bits (182), Expect = 2e-14
Identities = 33/36 (91%), Positives = 36/36 (99%)
Frame = +3
Query: 4 ADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKI 39
ADVEYRCFVGGLAWATD+EALEKAFSQYGEI+DSK+
Sbjct: 60 ADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKV 167
>TC77756 similar to PIR|T06796|T06796 glycine-rich RNA-binding protein -
garden pea, partial (89%)
Length = 813
Score = 129 bits (323), Expect = 7e-31
Identities = 64/127 (50%), Positives = 86/127 (67%)
Frame = +3
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ D ++L AF+ YG+++++++I DRETGRSRGFGFV F E+S A+
Sbjct: 189 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 365
Query: 69 MNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYG 128
M+GQD++GRNI V+ A R +GG R GGGYGGGGG SGGGGGY
Sbjct: 366 MDGQDLNGRNIRVSYANDRQAGGP--RPGGGYGGGGG--------------YSGGGGGYS 497
Query: 129 GGGGGGY 135
GGGGGG+
Sbjct: 498 GGGGGGW 518
>TC93504 weakly similar to PIR|S46286|S46286 RNA-binding protein - wood
tobacco, partial (55%)
Length = 576
Score = 124 bits (311), Expect(2) = 1e-30
Identities = 63/108 (58%), Positives = 78/108 (71%), Gaps = 3/108 (2%)
Frame = +3
Query: 25 EKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEA 84
EK FS+YG+++D+KII DR+TGRSRGFGF+TFA + A++ M+ +++DGR + VN A
Sbjct: 192 EKXFSRYGDVLDAKIIMDRDTGRSRGFGFITFATSEEASSALQAMDNKELDGRTVRVNYA 371
Query: 85 QSR---GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGG 129
R G GGGG GGGGY GGGGGYGGG GGY SGGGG YGG
Sbjct: 372 TERARPGFGGGGYGGGGGY-GGGGGYGGG----GGY---SGGGGNYGG 491
Score = 25.0 bits (53), Expect(2) = 1e-30
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 122 GGGGGYGGGGGGGYGGGRDRG 142
GGGG Y GGG YG + RG
Sbjct: 490 GGGGNY---GGGNYGWRKLRG 543
Score = 25.0 bits (53), Expect(2) = 0.47
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = +1
Query: 90 GGGGGRGGGGYG 101
GGGG GGG YG
Sbjct: 490 GGGGNYGGGNYG 525
Score = 23.5 bits (49), Expect(2) = 1.6
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 123 GGGGYGGGG 131
GGG YGGGG
Sbjct: 524 GGGNYGGGG 550
Score = 23.5 bits (49), Expect(2) = 0.47
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +2
Query: 103 GGGGYGGGG 111
GGG YGGGG
Sbjct: 524 GGGNYGGGG 550
Score = 23.1 bits (48), Expect(2) = 1.6
Identities = 8/12 (66%), Positives = 9/12 (74%)
Frame = +1
Query: 96 GGGGYGGGGGGY 107
GGG YGGG G+
Sbjct: 493 GGGNYGGGNYGW 528
>TC79678 homologue to GP|2674201|gb|AAC61786.1| glycine-rich RNA-binding
protein {Euphorbia esula}, partial (21%)
Length = 355
Score = 112 bits (280), Expect = 7e-26
Identities = 48/48 (100%), Positives = 48/48 (100%)
Frame = +3
Query: 117 YNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS 164
YNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS
Sbjct: 3 YNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS 146
Score = 30.4 bits (67), Expect = 0.33
Identities = 16/33 (48%), Positives = 17/33 (51%)
Frame = +3
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRS 120
G G GGGR G GG Y GG +GG RS
Sbjct: 48 GGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS 146
>BE124733 similar to PIR|T06796|T06 glycine-rich RNA-binding protein - garden
pea, partial (86%)
Length = 580
Score = 110 bits (276), Expect = 2e-25
Identities = 63/154 (40%), Positives = 85/154 (54%), Gaps = 27/154 (17%)
Frame = +3
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGL++ D ++L AF+ YG+++++++I DRETGRSRGFGFV F E+S A+
Sbjct: 147 KLFIGGLSYNVDDQSLRDAFTTYGDVVEARVITDRETGRSRGFGFVNFTSEESATSALS- 323
Query: 69 MNGQ---------------------------DMDGRNITVNEAQSRGSGGGGGRGGGGYG 101
M+GQ D++GRNI V+ A R +GG R GGGYG
Sbjct: 324 MDGQVVILC**MLIIF*LSF*LVV*HALVY*DLNGRNIRVSYANDRQAGGP--RPGGGYG 497
Query: 102 GGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGY 135
GGGG SGGGGGY GGGG G+
Sbjct: 498 GGGG--------------YSGGGGGYSGGGGCGW 557
>TC84935 similar to PIR|G96631|G96631 probable RNA-binding protein F8A5.17
[imported] - Arabidopsis thaliana, partial (41%)
Length = 552
Score = 108 bits (271), Expect = 7e-25
Identities = 62/143 (43%), Positives = 82/143 (56%), Gaps = 12/143 (8%)
Frame = +2
Query: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSM 62
S E R FVGGL W LE AF +YG+I++ +I+ +R+TGR RGFGF+TF+D + M
Sbjct: 122 SGKEENRIFVGGLGWDVTERQLEHAFDRYGKILECQIMMERDTGRPRGFGFITFSDRRGM 301
Query: 63 RDAIEGMNGQDMDGRNITVNEAQSR-GSGGGGGRGGGGYGGGG-GGYGGGGR-------- 112
DAI+ M+G+++ R I+VN+AQ R G R GG+ GG G YG G R
Sbjct: 302 EDAIKEMDGREIGDRIISVNKAQPRMGGDDADQRYRGGFSSGGRGSYGAGDRVGQDDCFK 481
Query: 113 --REGGYNRSSGGGGGYGGGGGG 133
R G + R GG GG G G
Sbjct: 482 CGRPGHWARDCPLAGGDGGRGRG 550
>TC86535 similar to GP|9758076|dbj|BAB08520.1 contains similarity to RNA
binding protein~gene_id:MNF13.1 {Arabidopsis thaliana},
partial (48%)
Length = 1555
Score = 100 bits (250), Expect = 2e-22
Identities = 69/188 (36%), Positives = 88/188 (46%), Gaps = 34/188 (18%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVGG+ + F++YGE+ D +I+ D T RSRGFGFVTF E+++ D +
Sbjct: 535 KIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFVTFDTEEAVDDLLSM 714
Query: 69 MNGQDMDGRNITVNEAQ----------------SRGSGGGGGRG------GGGYGGGGGG 106
N + G + + +A+ SR S G GG G GGG+GG GGG
Sbjct: 715 GNKIEFAGTQVEIKKAEPKKANAPPPSSKRYNDSRSSYGSGGYGDAYDGFGGGFGGVGGG 894
Query: 107 -------YGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGY-GDDGGSRYS----RG 154
YGG G GGY G GGY G GG Y G Y G GGS S G
Sbjct: 895 YSRSGSAYGGRGGPYGGYGSEFAGYGGYAGAMGGPYRGDPSLAYAGRYGGSFRSSYDLSG 1074
Query: 155 GGGDGGSW 162
GG G S+
Sbjct: 1075YGGPGESY 1098
Score = 62.0 bits (149), Expect = 1e-10
Identities = 32/83 (38%), Positives = 48/83 (57%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ F+GGLA T K F +YGEI DS I+ DR+TG+ RGFGF+T+AD + IE
Sbjct: 271 KIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIE- 447
Query: 69 MNGQDMDGRNITVNEAQSRGSGG 91
+ ++ + + + RG+ G
Sbjct: 448 -DSHIINSKQVEIKRTIPRGAVG 513
Score = 48.9 bits (115), Expect = 9e-07
Identities = 32/70 (45%), Positives = 34/70 (47%), Gaps = 16/70 (22%)
Frame = +1
Query: 91 GGGGRGGGGYGG-------GGGGYGGGGRREGGYNRSSGGGGGYGG--------GGGGGY 135
GG G G YGG GGGG G G + GY+ S GGG YGG G GGY
Sbjct: 1078 GGPGESYGAYGGAGAGAAAGGGGSSGAGAYQSGYDASLGGG--YGGAASGASFYGSRGGY 1251
Query: 136 GG-GRDRGYG 144
GG GR YG
Sbjct: 1252 GGAGRYHPYG 1281
Score = 40.8 bits (94), Expect = 2e-04
Identities = 22/48 (45%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Frame = +1
Query: 89 SGGGGGRGGGGYGGG-----GGGYGGGGRREGGYNRSSGGGGGYGGGG 131
+GGGG G G Y G GGGYGG Y G GGYGG G
Sbjct: 1132 AGGGGSSGAGAYQSGYDASLGGGYGGAASGASFY----GSRGGYGGAG 1263
>BQ151059 similar to GP|7291525|gb|A CG9888-PA {Drosophila melanogaster},
partial (26%)
Length = 308
Score = 98.6 bits (244), Expect = 1e-21
Identities = 48/74 (64%), Positives = 48/74 (64%)
Frame = +1
Query: 87 RGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDD 146
RG GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G
Sbjct: 34 RGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 213
Query: 147 GGSRYSRGGGGDGG 160
GG GGGG GG
Sbjct: 214 GGGGGGGGGGGGGG 255
Score = 97.4 bits (241), Expect = 2e-21
Identities = 48/84 (57%), Positives = 52/84 (61%)
Frame = +3
Query: 77 RNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYG 136
R ++ ++ G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG G
Sbjct: 3 RQLSPFPGKTPGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 182
Query: 137 GGRDRGYGDDGGSRYSRGGGGDGG 160
GG G G GG GGGG GG
Sbjct: 183 GGGGGGGGGGGGGGGGGGGGGGGG 254
Score = 97.1 bits (240), Expect = 3e-21
Identities = 48/79 (60%), Positives = 48/79 (60%)
Frame = +2
Query: 82 NEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDR 141
N G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG
Sbjct: 29 NPGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 208
Query: 142 GYGDDGGSRYSRGGGGDGG 160
G G GG GGGG GG
Sbjct: 209 GGGGGGGGGGGGGGGGGGG 265
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 56 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 235
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 236 GGGGGGGGGGGGG 274
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 73 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 252
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 253 GGGGGGGGGGGGG 291
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 59 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 238
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 239 GGGGGGGGGGGGG 277
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 53 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 232
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 233 GGGGGGGGGGGGG 271
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 64 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 243
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 244 GGGGGGGGGGGGG 282
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 67 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 246
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 247 GGGGGGGGGGGGG 285
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +3
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 72 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 251
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 252 GGGGGGGGGGGGG 290
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 89 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 268
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 269 GGGGGGGGGGGGG 307
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 76 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 255
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 256 GGGGGGGGGGGGG 294
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 80 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 259
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 260 GGGGGGGGGGGGG 298
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 82 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 261
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 262 GGGGGGGGGGGGG 300
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +1
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 85 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 264
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 265 GGGGGGGGGGGGG 303
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +3
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 63 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 242
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 243 GGGGGGGGGGGGG 281
Score = 96.7 bits (239), Expect = 4e-21
Identities = 47/73 (64%), Positives = 47/73 (64%)
Frame = +2
Query: 88 GSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDG 147
G GGGGG GGGG GGGGGG GGGG GG GGGGG GGGGGGG GGG G G G
Sbjct: 50 GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG 229
Query: 148 GSRYSRGGGGDGG 160
G GGGG GG
Sbjct: 230 GGGGGGGGGGGGG 268
>TC76523 homologue to PIR|T09648|T09648 nucleolin homolog nuM1 - alfalfa,
partial (69%)
Length = 1615
Score = 96.7 bits (239), Expect = 4e-21
Identities = 57/124 (45%), Positives = 71/124 (56%)
Frame = +3
Query: 32 GEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGSGG 91
GE I D E+G S+GF ++ F D S A+E ++ ++DG ++V+EA+ R S G
Sbjct: 933 GEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALE-LHESELDGYQLSVDEAKPRDSQG 1109
Query: 92 GGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRY 151
GGRGGGG GGG +GGGGR SGG GG GG GGG GGRD G G R
Sbjct: 1110 SGGRGGGG-RSGGGRFGGGGR--------SGGFGGRSGGRGGGRFGGRDSGGRGGRGGRG 1262
Query: 152 SRGG 155
RGG
Sbjct: 1263 GRGG 1274
Score = 58.5 bits (140), Expect = 1e-09
Identities = 35/96 (36%), Positives = 54/96 (55%), Gaps = 10/96 (10%)
Frame = +3
Query: 11 FVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMN 70
FVG L+++ +EK F GE++D + +D E GR +GFG V FA ++ + A+E MN
Sbjct: 558 FVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEE-GRFKGFGHVEFASAEAAQSALE-MN 731
Query: 71 GQDMDGRNITVNEAQSRG----------SGGGGGRG 96
GQ++ R + ++ A+ RG S GGRG
Sbjct: 732 GQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRG 839
>TC76790 similar to PIR|T06817|T06817 RNA-binding protein - garden pea,
partial (79%)
Length = 1141
Score = 93.2 bits (230), Expect = 4e-20
Identities = 41/83 (49%), Positives = 59/83 (70%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
R +V LAW D+ LE+ FS++G+I+ ++++ DRETGRSRGFGFVT +DE M DAI
Sbjct: 655 RIYVANLAWEVDNSRLEQVFSEHGKIVSARVVYDRETGRSRGFGFVTMSDETEMNDAIAA 834
Query: 69 MNGQDMDGRNITVNEAQSRGSGG 91
++GQ ++GR I V+ A+ R G
Sbjct: 835 LDGQSLEGRTIRVSVAEDRPRRG 903
Score = 68.2 bits (165), Expect = 1e-12
Identities = 33/81 (40%), Positives = 49/81 (59%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVG + DSE L F Q G + +++I +R+T SRGFGFVT + + A+E
Sbjct: 364 KLFVGNFPFDVDSEKLAMLFGQAGTVEIAEVIYNRQTDLSRGFGFVTMSTVEEAESAVEK 543
Query: 69 MNGQDMDGRNITVNEAQSRGS 89
NG D +GR++ VN+A +GS
Sbjct: 544 FNGYDYNGRSLVVNKASPKGS 606
Score = 31.6 bits (70), Expect = 0.15
Identities = 20/51 (39%), Positives = 25/51 (48%), Gaps = 2/51 (3%)
Frame = -2
Query: 83 EAQSRGSGGGGGRGGGGYGGG--GGGYGGGGRREGGYNRSSGGGGGYGGGG 131
E + G GG G G G+G G G+G G G+ SGG +GGGG
Sbjct: 165 EMEIEGFGGKGKEGRFGFGLG*EEAGFGHG*----GFEEWSGGSDRHGGGG 25
>BG586379 similar to PIR|T03442|T034 glycine-rich protein - rice, partial
(28%)
Length = 701
Score = 92.4 bits (228), Expect = 7e-20
Identities = 47/95 (49%), Positives = 55/95 (57%)
Frame = +1
Query: 41 NDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGY 100
N GRSRGFGFVT++ + AI+ +N Q+ DGR I V+ A R + GGY
Sbjct: 139 NFENKGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVDRASERSTPAPRS---GGY 309
Query: 101 GGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGY 135
GGGGGG G R GY S G GGG GG GGGGY
Sbjct: 310 GGGGGGGGYSSRGNSGYRSSRGRGGGGGGYGGGGY 414
>AL388260 weakly similar to SP|Q08937|ROC2_ 29 kDa ribonucleoprotein B
chloroplast precursor (CP29B). [Wood tobacco] {Nicotiana
sylvestris}, partial (26%)
Length = 346
Score = 90.9 bits (224), Expect = 2e-19
Identities = 41/81 (50%), Positives = 53/81 (64%)
Frame = +3
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
+ FVGGL+W TD L F +YG + D+ +I DR+TGRSRGFGFVTFA + AI+
Sbjct: 87 KLFVGGLSWGTDDRTLRSKFEEYGTVEDAVVIRDRDTGRSRGFGFVTFASNEEAEIAIQN 266
Query: 69 MNGQDMDGRNITVNEAQSRGS 89
+N + DGRNI V+ A R S
Sbjct: 267 LNDAEFDGRNIKVDRAAERSS 329
>CA859237 weakly similar to PIR|T45886|T458 RNA-binding protein cp29 protein
- Arabidopsis thaliana, partial (20%)
Length = 298
Score = 89.7 bits (221), Expect = 5e-19
Identities = 44/95 (46%), Positives = 58/95 (60%)
Frame = +2
Query: 23 ALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVN 82
AL+ F ++G + D+ +I DRETGRSRGFGFVT++ + AI+ +N Q+ DGR I V+
Sbjct: 2 ALKGKFEEFGNVEDAVVIRDRETGRSRGFGFVTYSSNEEAEAAIQSLNDQEFDGRTIKVD 181
Query: 83 EAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGY 117
A R + GGYGGGGGG G R GY
Sbjct: 182 RASERST---PAPRSGGYGGGGGGGGYSSRGNSGY 277
>TC76789 similar to GP|15294254|gb|AAK95304.1 AT4g24770/F22K18_30
{Arabidopsis thaliana}, partial (62%)
Length = 1294
Score = 88.6 bits (218), Expect = 1e-18
Identities = 39/79 (49%), Positives = 57/79 (71%)
Frame = +3
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
R +VG L W D+ +LE+ FS++G++ ++++ DRETGRSRGFGFVT ++E M DAI
Sbjct: 738 RAYVGNLPWDVDNSSLEQLFSEHGKVESAQVVYDRETGRSRGFGFVTMSNEAEMNDAIAA 917
Query: 69 MNGQDMDGRNITVNEAQSR 87
++GQ +GR I VN A+ R
Sbjct: 918 LDGQSFNGRAIRVNVAEER 974
Score = 71.2 bits (173), Expect = 2e-13
Identities = 34/83 (40%), Positives = 54/83 (64%)
Frame = +3
Query: 7 EYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAI 66
+ + FVG L + DSE L + F Q G + +++I +R+T RSRGFGFVT + + + A+
Sbjct: 450 DLKIFVGNLPFDVDSEKLAQLFEQSGTVEIAEVIYNRDTDRSRGFGFVTMSTSEEVERAV 629
Query: 67 EGMNGQDMDGRNITVNEAQSRGS 89
+G ++DGR +TVN+A RG+
Sbjct: 630 NKFSGFELDGRLLTVNKAAPRGT 698
>TC76948 similar to SP|Q08935|ROC1_NICSY 29 kDa ribonucleoprotein A
chloroplast precursor (CP29A). [Wood tobacco] {Nicotiana
sylvestris}, partial (61%)
Length = 1374
Score = 87.4 bits (215), Expect = 2e-18
Identities = 41/85 (48%), Positives = 59/85 (69%)
Frame = +1
Query: 3 SADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSM 62
S+D + R VG LAW D+ ALE F + G+++++K+I DRE+GRSRGFGFVTF+ +
Sbjct: 661 SSDGDNRVHVGNLAWGVDNLALESLFGEQGQVLEAKVIYDRESGRSRGFGFVTFSSADEV 840
Query: 63 RDAIEGMNGQDMDGRNITVNEAQSR 87
AI ++G D++GR I V+ A SR
Sbjct: 841 DSAIRTLDGADLNGRAIRVSPADSR 915
Score = 65.1 bits (157), Expect = 1e-11
Identities = 44/125 (35%), Positives = 60/125 (47%), Gaps = 5/125 (4%)
Frame = +1
Query: 9 RCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEG 68
R FVG L ++ DS L + F G++ ++I D+ TGRSRGFGFVT + + A +
Sbjct: 343 RLFVGNLPFSVDSAQLAEIFENAGDVEMVEVIYDKSTGRSRGFGFVTMSSAAEVEAAAQQ 522
Query: 69 MNGQDMDGRNITVNEA-----QSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGG 123
+NG +DGR + VN +S S G GG G GG G NR G
Sbjct: 523 LNGYVVDGRELRVNAGPPPPPRSENSRFGENPRFGGDRPRGPPRGGS---SDGDNRVHVG 693
Query: 124 GGGYG 128
+G
Sbjct: 694 NLAWG 708
Database: MTGI
Posted date: Oct 22, 2004 3:39 PM
Number of letters in database: 27,044,181
Number of sequences in database: 36,976
Lambda K H
0.312 0.144 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,136,639
Number of Sequences: 36976
Number of extensions: 94254
Number of successful extensions: 19945
Number of sequences better than 10.0: 954
Number of HSP's better than 10.0 without gapping: 2221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8224
length of query: 164
length of database: 9,014,727
effective HSP length: 89
effective length of query: 75
effective length of database: 5,723,863
effective search space: 429289725
effective search space used: 429289725
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 54 (25.4 bits)
Medicago: description of AC134242.10