TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC127428.20 + phase: 0 /pseudo
         (1425 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

BG644690 weakly similar to GP|18542179|gb putative pol protein {...    47  4e-05
TC88883 similar to PIR|B84247|B84247 proline permease [imported]...    35  0.16
CB894419 weakly similar to GP|10177935|db copia-type polyprotein...    32  1.3
TC88759 similar to GP|16588826|gb|AAL26909.1 dehydration-respons...    30  6.7
TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidops...    30  6.7

>BG644690 weakly similar to GP|18542179|gb putative pol protein {Zea mays},
            partial (22%)
          Length = 629

 Score = 47.4 bits (111), Expect = 4e-05
 Identities = 47/163 (28%), Positives = 68/163 (40%)
 Frame = -1

Query: 1045 YQ*LNLKQLMKHSQMMNGY*QCRKS*ISFKEPMCGI*YPNPSRRTLLEQNGYSETS*MRK 1104
            Y  L+ + L KH  M  G   C+K+ IS KE   G  + +   +  LE  G+ ETS    
Sbjct: 599  YHLLSPRMLKKHCVMQTGSILCKKNSISLKEVRYGTWFLDLKAKQ*LELGGFLETSLSDY 420

Query: 1105 VK*PETKPDLLHKDIVNKKALIILKLLLQLQDWKQSGYFYLCNQSWNNNISNRC*ECFS* 1164
             K* +     +     N+   +        Q+     +   C       + N C EC  *
Sbjct: 419  *K*IQVGGARIQSKRRNR---L**GFFTCCQNGSY*NFNSFCCIHGVQAVPNGCEECIY* 249

Query: 1165 WCH*RRSICQTTSWF*GS*IS*PCL*A*EITIWLETSSQSLL* 1207
            W   R  +CQ TSW *    +  C+     TIW E SS+S++*
Sbjct: 248  WRSQRGGVCQATSWI*RCRGTKSCVQIE*DTIWSEASSKSMV* 120


>TC88883 similar to PIR|B84247|B84247 proline permease [imported] -
            Halobacterium sp. NRC-1, partial (4%)
          Length = 676

 Score = 35.4 bits (80), Expect = 0.16
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -2

Query: 989  HLMKMLLKIFQKTLSKQFHQSLNTNHHIL 1017
            HL  +L K+ Q  LS ++HQ L T HH+L
Sbjct: 312  HLQLLLTKLLQHQLSAKYHQQLQTKHHLL 226


>CB894419 weakly similar to GP|10177935|db copia-type polyprotein {Arabidopsis
            thaliana}, partial (2%)
          Length = 170

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/47 (29%), Positives = 26/47 (54%)
 Frame = +2

Query: 1303 EEVQTRRLQSDEHSNASYLHLKQRR*WNKSRPEAV*RYDWFFVIFHC 1349
            EE+Q    +++ H+    +   +R+ W K R  ++ ++DW F IF C
Sbjct: 26   EEIQDGAFKANFHAG*RKVEADKRKRW*KGRLNSLQKFDWKFEIFDC 166


>TC88759 similar to GP|16588826|gb|AAL26909.1 dehydration-responsive protein
            RD22 {Prunus persica}, partial (14%)
          Length = 1111

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 2/66 (3%)
 Frame = +1

Query: 1269 NEHDGRTKVLSRNSNQSKQRWSLCSSNKIHKGASEEVQTRRLQSDEHSNASY--LHLKQR 1326
            + HD   K   R S   KQ    CS    +   S   QT    S  H +  Y  LHLK+ 
Sbjct: 46   SNHDFLWKQSKRISWNRKQTLGYCSEQNCY**TSNRTQTSCT*SQSHGSFCYGVLHLKRL 225

Query: 1327 R*WNKS 1332
            + W K+
Sbjct: 226  KSWEKN 243


>TC81158 similar to GP|9280664|gb|AAF86533.1| F21B7.15 {Arabidopsis
           thaliana}, partial (6%)
          Length = 890

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 14/47 (29%), Positives = 32/47 (67%), Gaps = 1/47 (2%)
 Frame = +2

Query: 931 LMIESLEVKLQSKVKVLQVN-KILKMHQNLI*HSTLKRVQKLNQIQK 976
           + I+ +EVK++ KVKVL +N ++L +H+  +  + +K  + + +++K
Sbjct: 401 MRIKMMEVKVKVKVKVLSLNLRVLLLHRRRLVLTVMKTTKTMQKMKK 541


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.377    0.169    0.647 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,705,826
Number of Sequences: 36976
Number of extensions: 588047
Number of successful extensions: 9419
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1664
Number of HSP's successfully gapped in prelim test: 351
Number of HSP's that attempted gapping in prelim test: 7632
Number of HSP's gapped (non-prelim): 2387
length of query: 1425
length of database: 9,014,727
effective HSP length: 108
effective length of query: 1317
effective length of database: 5,021,319
effective search space: 6613077123
effective search space used: 6613077123
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 13 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 35 (21.6 bits)
S2: 65 (29.6 bits)