TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC119419.1 + phase: 0 /partial
         (107 letters)

Database: MTGI 
           36,976 sequences; 27,044,181 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC76908 homologue to GP|8131699|dbj|BAA96366.1 cytoplasmic ribos...   215  2e-57
TC87991 homologue to SP|P46298|RS13_PEA 40S ribosomal protein S1...   212  2e-56
TC78633 homologue to GP|6521012|dbj|BAA88058.1 cytoplasmic ribos...   209  1e-55
CA859430 similar to GP|8131699|dbj cytoplasmic ribosomal protein...   174  4e-45
TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {...    29  0.32
AJ496888 similar to PIR|T47757|T477 hypothetical protein F24I3.5...    27  0.94
TC90444 similar to GP|21593333|gb|AAM65282.1 phytochrome-associa...    27  1.6
TC90716 similar to GP|15810239|gb|AAL07237.1 unknown protein {Ar...    26  2.7
TC84909 similar to GP|3395431|gb|AAC28763.1| unknown protein {Ar...    25  4.6
TC93374 homologue to SP|Q9BBN8|NUCC_LOTJA NADH-plastoquinone oxi...    25  6.1
BQ751974 weakly similar to GP|9800311|gb|A pr95.1 {rat cytomegal...    25  6.1
AJ497069 similar to GP|11994351|dbj gene_id:MSJ11.19~unknown pro...    25  6.1
AW584479                                                               24  7.9

>TC76908 homologue to GP|8131699|dbj|BAA96366.1 cytoplasmic ribosomal
           protein S13 {Panax ginseng}, complete
          Length = 744

 Score =  215 bits (548), Expect = 2e-57
 Identities = 107/107 (100%), Positives = 107/107 (100%)
 Frame = +3

Query: 1   VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
           VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI
Sbjct: 183 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 362

Query: 61  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
           KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 363 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 503


>TC87991 homologue to SP|P46298|RS13_PEA 40S ribosomal protein S13. [Garden
           pea] {Pisum sativum}, complete
          Length = 681

 Score =  212 bits (540), Expect = 2e-56
 Identities = 105/107 (98%), Positives = 107/107 (99%)
 Frame = +3

Query: 1   VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
           VDETICKFAKKGLTPSQIGVILRDSHGIAQVK+VTG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 105 VDETICKFAKKGLTPSQIGVILRDSHGIAQVKSVTGSKILRILKAHGLAPEIPEDLYHLI 284

Query: 61  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
           KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 285 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 425


>TC78633 homologue to GP|6521012|dbj|BAA88058.1 cytoplasmic ribosomal
           protein S13 {Arabidopsis thaliana}, complete
          Length = 816

 Score =  209 bits (532), Expect = 1e-55
 Identities = 103/107 (96%), Positives = 106/107 (98%)
 Frame = +2

Query: 1   VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
           V+ETICKFAKKGLTPSQIGVILRDSHGIAQVK +TG+KILRILKAHGLAPEIPEDLYHLI
Sbjct: 164 VEETICKFAKKGLTPSQIGVILRDSHGIAQVKFITGSKILRILKAHGLAPEIPEDLYHLI 343

Query: 61  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
           KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW
Sbjct: 344 KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 484


>CA859430 similar to GP|8131699|dbj cytoplasmic ribosomal protein S13 {Panax
           ginseng}, complete
          Length = 575

 Score =  174 bits (442), Expect = 4e-45
 Identities = 85/107 (79%), Positives = 97/107 (90%)
 Frame = +2

Query: 1   VDETICKFAKKGLTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLI 60
           V E ICK+AKKG+ PSQIGV L+D+HGIAQVK VTGNKILRILK++GLA EIPEDLYHLI
Sbjct: 152 VCEQICKYAKKGMRPSQIGVYLQDAHGIAQVKNVTGNKILRILKSNGLASEIPEDLYHLI 331

Query: 61  KKAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPVW 107
           KKAV++RKHLERNRKDKDSKFRLIL+ESRIHRL+RYYK + +L P W
Sbjct: 332 KKAVAVRKHLERNRKDKDSKFRLILIESRIHRLSRYYKTSGQLAPNW 472


>TC86258 similar to GP|16930433|gb|AAL31902.1 AT4g17230/dl4650c {Arabidopsis
            thaliana}, partial (62%)
          Length = 2237

 Score = 28.9 bits (63), Expect = 0.32
 Identities = 15/52 (28%), Positives = 24/52 (45%)
 Frame = +3

Query: 21   ILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLER 72
            +L + H  A        + LR+     LA   P  L+H+  ++VSI  H +R
Sbjct: 1380 VLFEFHSAAMSGCEVQRENLRVSPGEALAVNFPFSLHHMPDESVSIENHRDR 1535


>AJ496888 similar to PIR|T47757|T477 hypothetical protein F24I3.50 -
           Arabidopsis thaliana, partial (13%)
          Length = 676

 Score = 27.3 bits (59), Expect = 0.94
 Identities = 16/38 (42%), Positives = 22/38 (57%)
 Frame = +3

Query: 39  ILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKD 76
           I R+LK     PE+   +  LIK+   I+ HL RNRK+
Sbjct: 168 ISRVLK---YIPELQNQVEGLIKRKELIKYHLIRNRKE 272


>TC90444 similar to GP|21593333|gb|AAM65282.1 phytochrome-associated protein
           1 (PAP1) {Arabidopsis thaliana}, partial (48%)
          Length = 1169

 Score = 26.6 bits (57), Expect = 1.6
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 55  DLYHLIKKAVSIRKHLERNRKDKDSKFRLILVESRIH 91
           DL HL+KK++ ++K    ++K +      +LV  +IH
Sbjct: 350 DLVHLVKKSLLMKKA*RMSKKKEMKNHHSLLVMLKIH 460


>TC90716 similar to GP|15810239|gb|AAL07237.1 unknown protein {Arabidopsis
           thaliana}, partial (64%)
          Length = 1094

 Score = 25.8 bits (55), Expect = 2.7
 Identities = 14/44 (31%), Positives = 22/44 (49%)
 Frame = +3

Query: 40  LRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERNRKDKDSKFRL 83
           + +L+     P IP   +  +K+      HL+  RKDK S FR+
Sbjct: 84  MMLLQQSNFCP-IPSSQFPSLKQRNPFLHHLQFRRKDKASTFRI 212


>TC84909 similar to GP|3395431|gb|AAC28763.1| unknown protein {Arabidopsis
           thaliana}, partial (17%)
          Length = 737

 Score = 25.0 bits (53), Expect = 4.6
 Identities = 13/57 (22%), Positives = 27/57 (46%), Gaps = 10/57 (17%)
 Frame = -1

Query: 52  IPEDLYHLIK----------KAVSIRKHLERNRKDKDSKFRLILVESRIHRLARYYK 98
           +P+DLYHL++             ++  H  + R+ K+  FR  ++ S +H     ++
Sbjct: 629 LPDDLYHLLQYMPIGDLKVHVITTVLYHCLQKRESKNLNFRAPML*SLLHSFYHIFR 459


>TC93374 homologue to SP|Q9BBN8|NUCC_LOTJA NADH-plastoquinone oxidoreductase
           49 kDa subunit  chloroplast (EC 1.6.5.3). {Lotus
           japonicus}, partial (24%)
          Length = 612

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 69  HLERNRKDKDSKFRLILVESRIHRLARYYKKTKKLP 104
           HLE + KD  S+  L ++  +  RL  Y  K  K+P
Sbjct: 63  HLELHPKDYLSQRGLHIILGKRQRLLSYLSKKNKIP 170


>BQ751974 weakly similar to GP|9800311|gb|A pr95.1 {rat cytomegalovirus
           Maastricht}, partial (3%)
          Length = 553

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 14  TPSQIGVILRDSHGIAQVKAVTGNKILRILKAHGLAPEIPEDLYHLIKKAVSIRKHLERN 73
           TP+Q+ V+L ++HG+ +   VT          H L P     L H+    V +    E  
Sbjct: 113 TPNQLLVLLAENHGLWRAGVVT----------HPLRP-----LRHVAPDRVRVASGNEAG 247

Query: 74  --RKDKDSKFRLILVESRIHRLAR 95
             R  + ++  L + ++R+ RLAR
Sbjct: 248 NVRIIRQAELLLRVRDARLARLAR 319


>AJ497069 similar to GP|11994351|dbj gene_id:MSJ11.19~unknown protein
           {Arabidopsis thaliana}, partial (12%)
          Length = 490

 Score = 24.6 bits (52), Expect = 6.1
 Identities = 20/56 (35%), Positives = 28/56 (49%), Gaps = 4/56 (7%)
 Frame = +3

Query: 55  DLYHLIKKAVSIRKHLE----RNRKDKDSKFRLILVESRIHRLARYYKKTKKLPPV 106
           DLY  I++ +  R+H+E    RN   K S+F     E+   R AR  +K K  P V
Sbjct: 3   DLYCTIRREIHTRRHMEEYLKRNGGPKVSEFDWGNGETP-RRSARIIEKAKAAPLV 167


>AW584479 
          Length = 567

 Score = 24.3 bits (51), Expect = 7.9
 Identities = 12/35 (34%), Positives = 21/35 (59%)
 Frame = -3

Query: 13  LTPSQIGVILRDSHGIAQVKAVTGNKILRILKAHG 47
           +TPSQI +I   ++ + ++K +T N I   +  HG
Sbjct: 433 ITPSQIQIINNPNNHLPKLKNITTNSIRNFI--HG 335


  Database: MTGI
    Posted date:  Oct 22, 2004  3:39 PM
  Number of letters in database: 27,044,181
  Number of sequences in database:  36,976
  
Lambda     K      H
   0.322    0.139    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,771,635
Number of Sequences: 36976
Number of extensions: 26857
Number of successful extensions: 141
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of query: 107
length of database: 9,014,727
effective HSP length: 83
effective length of query: 24
effective length of database: 5,945,719
effective search space: 142697256
effective search space used: 142697256
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)