BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC149495.11 - phase: 0
(421 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AV414925 91 4e-19
TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromo... 82 1e-16
TC19187 62 1e-10
BP051299 61 4e-10
CB826914 59 1e-09
TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (... 59 2e-09
TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific... 56 1e-08
BP035281 52 2e-07
TC9055 52 2e-07
BG662160 51 3e-07
AW720409 49 2e-06
BI419994 49 2e-06
BP038236 49 2e-06
BP052653 48 3e-06
AW428730 47 5e-06
BP076687 47 5e-06
AV777665 46 1e-05
AV427033 44 5e-05
TC13380 43 9e-05
AV765936 43 1e-04
>AV414925
Length = 414
Score = 90.9 bits (224), Expect = 4e-19
Identities = 53/114 (46%), Positives = 72/114 (62%), Gaps = 6/114 (5%)
Frame = +1
Query: 11 VASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLN------FKL 64
+A ++P +++A+I S LPV SLLRFRS SKS RSLIDS F+ LHL +SL L
Sbjct: 85 MAEEIPVEVIADILSRLPVTSLLRFRSISKSWRSLIDSKHFMKLHLNNSLTNPNPNLTNL 264
Query: 65 ILRHKTNLYQLDFPNLTKSIIPLNHPFTTNIDPFTLNSIKALIGSCNGLLAIYN 118
ILRH T+LY+ DFP++ + + LNHP + ++GSC+GLL I N
Sbjct: 265 ILRHNTDLYRADFPSI-GAAVNLNHPLMCYSNRIN------ILGSCHGLLCICN 405
>TC14800 weakly similar to UP|Q9FHP3 (Q9FHP3) Genomic DNA, chromosome 5, TAC
clone:K14B20, partial (7%)
Length = 782
Score = 82.4 bits (202), Expect = 1e-16
Identities = 65/251 (25%), Positives = 118/251 (46%), Gaps = 7/251 (2%)
Frame = +3
Query: 15 LPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLNFK-LILRHKTNLY 73
LP +++ EI S LPVKSLL+FR SK+ +S I +F+ LHL L+F+ H + L
Sbjct: 48 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFRNADFEHTSLLI 227
Query: 74 QLDFPNLTKSIIPLNHPFTTNIDPFTLNSIKA------LIGSCNGLLAIYNGPIAFTHPN 127
+ + + I + P + + ++ IG+CNGL+++ ++ N
Sbjct: 228 KCHTDDFGRPYISSRTVSSLLESPSAIVASRSCISGYDFIGTCNGLVSLRKLNYDESNTN 407
Query: 128 DATEITIWNTNTRKHWIIPFLPLPIPNIVESENIERGGVCIHGFGFDPLTGDYKLLRISW 187
+ +++ WN TR + P N+ GFG+D + YK++ +
Sbjct: 408 NFSQVRFWNPATRT------MSQDSPPSWSPRNLHL------GFGYDCSSDTYKVVGMIP 551
Query: 188 LVSLQNSFYHSHARLFSSKTNSWKIIPIMPYTVYYAQAMGVFVENSIHWIMEKNLDGSDL 247
+++ N +++ N W+ I I P+ + Q V+V N+++W L G++
Sbjct: 552 GLTMVN--------VYNMGDNCWRTIQISPHAPMHLQGSAVYVSNTLNW-----LAGTNP 692
Query: 248 CLIVAFNLTLE 258
IV+F+L E
Sbjct: 693 YFIVSFDLEKE 725
>TC19187
Length = 632
Score = 62.4 bits (150), Expect = 1e-10
Identities = 34/96 (35%), Positives = 55/96 (56%)
Frame = +1
Query: 227 GVFVENSIHWIMEKNLDGSDLCLIVAFNLTLEVFKEVPLPAVIRGEEVNNNQSFDLEVAV 286
G FV +++W ++ S L +IV+ +L E +KE+ LP EE + ++V
Sbjct: 7 GKFVSGTLNWAANYSVGVSSLWIIVSLDLQKETYKEI-LPPDYEKEECSTPT-----LSV 168
Query: 287 LGGCLSMIVNYQTTKIDVWVMKEYGSRDSWCKIFTL 322
L GCL M +++ T VW+MK+YG R+SW K+ T+
Sbjct: 169 LKGCLCMNYDHKRTDFVVWMMKDYGVRESWVKLVTI 276
>BP051299
Length = 539
Score = 60.8 bits (146), Expect = 4e-10
Identities = 53/176 (30%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Frame = +2
Query: 15 LPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLNFKLILRHKTNLYQ 74
LP +I AEI LP K+L++ S KS RSLI S FI+LH S + L+ +
Sbjct: 5 LPQEIWAEILHRLPPKTLVKCTSVCKSWRSLITSTSFISLHRNHSPSSLLL----QLCDE 172
Query: 75 LDFPNLTKSIIPLNHPFTTNID----PFTLNSIKALIGSCNGLLAIYNGPIAFTHPNDAT 130
PN + + PF + P + N +++G C+GL+ I T +
Sbjct: 173 RAIPNFIHYSLRRDDPFLSESSSLRLPSSFNREFSVVGICHGLVCI-------TSTENCR 331
Query: 131 EITIWNTNTRKHWIIPFLPLPIPNIVESENIERGGVCIHGFGFDPLTGDYKLLRIS 186
++ I N + R H +P P P++ S ++ FGFD DYK++RI+
Sbjct: 332 DLIICNPSLRLHITLP-EPSDYPSL-HSASV--------AFGFDSRNNDYKVIRIA 469
>CB826914
Length = 575
Score = 59.3 bits (142), Expect = 1e-09
Identities = 45/138 (32%), Positives = 70/138 (50%), Gaps = 5/138 (3%)
Frame = +1
Query: 14 DLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLNFKLIL-RHKTNL 72
D+ D++ EI LPVKS++RF++ K RSLI F +LH + + L H
Sbjct: 163 DMDRDLIIEILLMLPVKSIVRFKAVCKLWRSLISDPLFASLHFQRAAPSLLFADSHAIRT 342
Query: 73 YQLDFPNLTKSII-PLNHPFTTNIDPFTL-NSIKALIGSCNGLLAI-YNGPIAFTHP-ND 128
L+ P + + P+N F +N +L + ++ GSC G L I + I + HP ND
Sbjct: 343 IDLEGPLQSHRVSQPINCHFLSNYHDLSLPRNCISIHGSCRGFLLITWISNIGYGHPWND 522
Query: 129 ATEITIWNTNTRKHWIIP 146
+ + +WN +T H IP
Sbjct: 523 S--LYLWNPSTHVHKPIP 570
>TC14802 weakly similar to UP|CAD56661 (CAD56661) S locus F-box (SLF)-S4
protein, partial (10%)
Length = 551
Score = 58.9 bits (141), Expect = 2e-09
Identities = 59/241 (24%), Positives = 98/241 (40%)
Frame = +3
Query: 15 LPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLNFKLILRHKTNLYQ 74
LP +++ EI S LPVKSLL+FR SK+ +S I +F+ LHL L+F+
Sbjct: 21 LPDELIIEILSWLPVKSLLQFRVVSKTWKSFISDPQFVKLHLLHRLSFR----------N 170
Query: 75 LDFPNLTKSIIPLNHPFTTNIDPFTLNSIKALIGSCNGLLAIYNGPIAFTHPNDATEITI 134
DF + + I + D F I + +
Sbjct: 171 ADFEHTSLLI-------KCHTDDFGRPYI------------------------SSRTVRF 257
Query: 135 WNTNTRKHWIIPFLPLPIPNIVESENIERGGVCIHGFGFDPLTGDYKLLRISWLVSLQNS 194
WN TR + P N+ G FG+D + YK++ + +++ N
Sbjct: 258 WNPATRT------MSQDSPPSWSPRNLHLG------FGYDCSSDTYKVVGMIPGLTMVN- 398
Query: 195 FYHSHARLFSSKTNSWKIIPIMPYTVYYAQAMGVFVENSIHWIMEKNLDGSDLCLIVAFN 254
+++ N W+ I I P+ + Q V+V N+++W L G++ IV+F+
Sbjct: 399 -------VYNMGDNCWRTIQISPHAPMHLQGSAVYVSNTLNW-----LAGTNPYFIVSFD 542
Query: 255 L 255
L
Sbjct: 543 L 545
>TC8398 weakly similar to UP|Q84KK1 (Q84KK1) S haplotype-specific F-box
protein a, partial (9%)
Length = 1602
Score = 56.2 bits (134), Expect = 1e-08
Identities = 56/220 (25%), Positives = 95/220 (42%), Gaps = 42/220 (19%)
Frame = +3
Query: 6 PSFLPVASDLPPDILA-----EIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSS- 59
P L ++ PP IL EI S LPVKSL+RFR KS + I + +F+ LHL+ S
Sbjct: 36 PPTLVADTEPPPPILIDELIWEILSLLPVKSLVRFRCVCKSWKLTISNPQFMKLHLRRSS 215
Query: 60 -------LNFKLILRHKTNLYQLDFPNLTKSIIPLNHPFTTNIDPFTLNSIK-------- 104
+ ++++ K + + P L+K I + FT + +P+ +++++
Sbjct: 216 AKAAADFADSQVVVMTKRD-HIAHSPLLSKFHIVHDETFTAD-EPWPVHALREPFNQPHV 389
Query: 105 ---------------------ALIGSCNGLLAIYNGPIAFTHPNDATEITIWNTNTRKHW 143
LIG+CNGL+++ N + AT+++ N N
Sbjct: 390 SICYAPSLFSSQNNDKLKGHCRLIGACNGLVSVINE--GYNSAESATKLSCCNLNPATKL 563
Query: 144 IIPFLPLPIPNIVESENIERGGVCIHGFGFDPLTGDYKLL 183
P + ++ I GFG+DPL YK++
Sbjct: 564 RSQVSPTLSLCYKQFHSLIHSVFRIFGFGYDPLNDTYKVV 683
Score = 39.3 bits (90), Expect = 0.001
Identities = 40/171 (23%), Positives = 72/171 (41%), Gaps = 9/171 (5%)
Frame = +1
Query: 227 GVFVENSIHWIMEKNLDGSDLCLIVAFNLTLEVFKEVPLPAVIRGEEVNNNQSFDLE--V 284
GV++ +I+W++ N+ I++ +L EV + LP +DL +
Sbjct: 835 GVYLNGTINWVLRLNIAYD----IISLDLGSEVCSRLSLPCF---PPPGPKCVYDLPPIL 993
Query: 285 AVLGGCLSMIVNYQTTKIDVWVMKEYGSRDSWCKIFTL-VKSRFTLRLKSLRPLGYSSDG 343
VL L ++ N +W M E+G+ +SW +F K R + S+
Sbjct: 994 GVLKDSLCVLHNNNDKTFVIWKMNEFGAHESWTPLFNFDFKKEDLYRFDKF----FFSEN 1161
Query: 344 NKVLLQIDCKKLVW------YDLKSEQVIYVEGIPNLDEAMICVESLVPPS 388
++VLL K++++ + Y+ N++ VESLV PS
Sbjct: 1162DEVLLMTLTKQVLYNHSDITFKFNDRVHNYIHDWNNIEN---YVESLVSPS 1305
>BP035281
Length = 498
Score = 52.0 bits (123), Expect = 2e-07
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Frame = +2
Query: 11 VASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHK-FINLHLKSS---LNFKLIL 66
V P +++ EI S LPV SL+RF+ KS +SLI +K F L L+ + +N ++
Sbjct: 110 VTDVFPSELVIEILSWLPVLSLIRFKCVCKSWKSLISHNKAFAKLQLERTSLKINHVILT 289
Query: 67 RHKTNLYQLDFPNLTK---SIIPLNHPFTTNIDPFTLNSIKALIGSCNGLLAIY 117
++ P L + SI+ + +D F N + IGSCNGL+ ++
Sbjct: 290 SSDSSFIPCSLPRLLEDPSSIMDQDQDRCLRLDKFEYNEV---IGSCNGLICLH 442
>TC9055
Length = 577
Score = 51.6 bits (122), Expect = 2e-07
Identities = 46/163 (28%), Positives = 74/163 (45%), Gaps = 9/163 (5%)
Frame = +2
Query: 234 IHWIMEKNLDGSDLCLIVAFNLTLEVFKEVPLPAVIRGEEVNNNQSFDLEVAVLGGCLSM 293
++W+ K + + +IV+ ++ E ++ + LP ++ E+ VLG CL +
Sbjct: 8 VNWLANK-FEPFEQLVIVSLDMRQEAYRLLSLPQ-------GTSELPSAEIQVLGNCLCL 163
Query: 294 IVNYQTTKIDVWVMKEYGSRDSWCKIFTLV------KSRFTLRLKSLRPLGYSSDGNKVL 347
+++ T W M EYG +SW + T+ RF L + G DG+ +
Sbjct: 164 FYDFKRTHFVAWKMSEYGLPESWTPLLTISYEHLRWDHRFYLNQWLICLCG---DGHIFM 334
Query: 348 LQIDCKKLVWYDLKSEQVIYVEGIPN---LDEAMICVESLVPP 387
L K ++ Y+L V YVE N LD A VESLV P
Sbjct: 335 LAKKQKLVIIYNLSDNSVKYVELASNKLWLD-ANDYVESLVSP 460
>BG662160
Length = 445
Score = 51.2 bits (121), Expect = 3e-07
Identities = 38/129 (29%), Positives = 56/129 (42%)
Frame = +2
Query: 12 ASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSSLNFKLILRHKTN 71
A LP ++ EI S LPVKSL+RFR SKS +S+I +FI LHL R +
Sbjct: 14 AQFLPEELRLEILSWLPVKSLVRFRCVSKSWKSIISDSQFIKLHLH---------RSSST 166
Query: 72 LYQLDFPNLTKSIIPLNHPFTTNIDPFTLNSIKALIGSCNGLLAIYNGPIAFTHPNDATE 131
DF L I + + + G+CNGL+ +++ +
Sbjct: 167 TRNTDFAYLQSLITSPRK--SRSASTIAIPDDYDFCGTCNGLVCLHSSKYD-RKDKYTSH 337
Query: 132 ITIWNTNTR 140
+ +WN R
Sbjct: 338 VRLWNPAMR 364
>AW720409
Length = 575
Score = 48.9 bits (115), Expect = 2e-06
Identities = 42/127 (33%), Positives = 64/127 (50%), Gaps = 14/127 (11%)
Frame = +3
Query: 5 LPSFLPVASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLI-DSHKFINLHLKSS--LN 61
L S + + LP ++ EI S LPVK+L+RF SKS +SLI F LHL S N
Sbjct: 63 LQSDMEIEFVLPFELWIEILSWLPVKTLMRFSCVSKSWKSLIYQDRDFKKLHLDRSPKNN 242
Query: 62 FKLILRHKTNLY--QLDFPNLTKSIIPLNHPFTTNI---------DPFTLNSIKALIGSC 110
++IL + L+ + FP + ++ P +++I D ++ IGSC
Sbjct: 243 NQVILTLQKPLFSGRTFFPFPVRRLLQDQEPSSSSIIDDIPFEEEDEDEEDNYHDTIGSC 422
Query: 111 NGLLAIY 117
NGL+ +Y
Sbjct: 423 NGLVCLY 443
>BI419994
Length = 549
Score = 48.5 bits (114), Expect = 2e-06
Identities = 49/196 (25%), Positives = 79/196 (40%), Gaps = 19/196 (9%)
Frame = +2
Query: 9 LPVASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLK----------- 57
L + S LP +++ +I LPV+SLLRF++ KS R LI +F H
Sbjct: 29 LSLFSHLPDELILQILLRLPVRSLLRFKTVCKSWRYLISDPQFTKSHFNLAASPTHRIFL 208
Query: 58 --------SSLNFKLILRHKTNLYQLDFPNLTKSIIPLNHPFTTNIDPFTLNSIKALIGS 109
SL+ L +++L L FP P NH F +++ +K L GS
Sbjct: 209 NNTNGF*IESLDTDSSLHDESSLVHLKFPLAPPH--PDNHRFGSSV-----TGLKVL-GS 364
Query: 110 CNGLLAIYNGPIAFTHPNDATEITIWNTNTRKHWIIPFLPLPIPNIVESENIERGGVCIH 169
C G + + N + +WN +T +P + + E ++
Sbjct: 365 CRGFVLL---------ANHQGNVVVWNPSTGVRRRVPEWCSYLASQCE---------FLY 490
Query: 170 GFGFDPLTGDYKLLRI 185
G G+D DY ++ I
Sbjct: 491 GIGYDESNDDYLVVFI 538
>BP038236
Length = 515
Score = 48.5 bits (114), Expect = 2e-06
Identities = 37/110 (33%), Positives = 60/110 (53%), Gaps = 7/110 (6%)
Frame = -1
Query: 286 VLGGCLSMIV-NYQTTKIDVWVMKEYGSRDSWCKIFTLVKSRFTLRLKSLRPLGYSSDGN 344
VL CLSM+ NYQ DVW+MKEYG++ SW K+F++ K F ++ + + +
Sbjct: 515 VLRDCLSMLSGNYQVC--DVWLMKEYGNQQSWTKLFSVAKQLFHHQVFDTL---HIFEED 351
Query: 345 KVLLQIDCKKLVWY----DLKSEQVIYVEG--IPNLDEAMICVESLVPPS 388
++LL K +++ LK+ Q+ + G +P + VESL+ PS
Sbjct: 350 QLLLVCGSKLYLYHPRDNTLKTHQIQNITGWVVPG-----VYVESLISPS 216
>BP052653
Length = 552
Score = 48.1 bits (113), Expect = 3e-06
Identities = 37/119 (31%), Positives = 65/119 (54%), Gaps = 8/119 (6%)
Frame = +1
Query: 9 LPVASDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLH--LKSSLNFKLIL 66
L ++S LP D++ +I LPV+SLLRF+S KS SLI +F H L ++ + ++
Sbjct: 169 LNLSSILPHDLIVQILLRLPVRSLLRFKSVCKSWLSLISDPQFGKSHFDLAAAPTHRCLV 348
Query: 67 RHKTNLYQLDFPNLTKSI------IPLNHPFTTNIDPFTLNSIKALIGSCNGLLAIYNG 119
K N ++L+ ++ S+ + L P+T + + I+ ++GSC G +A+ G
Sbjct: 349 --KINNFKLESLDVDASVLDQSSEVNLKFPYT----GYVIFHIQ-ILGSCRGFIALVRG 504
>AW428730
Length = 405
Score = 47.4 bits (111), Expect = 5e-06
Identities = 28/102 (27%), Positives = 48/102 (46%), Gaps = 3/102 (2%)
Frame = +3
Query: 168 IHGFGFDPLTGDYKLLRISWLVSLQNSFYHSHARLFSSKTNSWKI---IPIMPYTVYYAQ 224
+ GFG+D T DY ++R+ + + + FS + N WK + + P T
Sbjct: 39 LFGFGYDSSTDDYLVVRVP-VTDCYQPTHLPDVQFFSLRANMWKYTEGVDLPPLTTIDL- 212
Query: 225 AMGVFVENSIHWIMEKNLDGSDLCLIVAFNLTLEVFKEVPLP 266
G+ +IHW + +DG I+AF+L + E+P+P
Sbjct: 213 CHGLLFNEAIHWAVSNWVDGVTNMFIIAFDLMEKRLLEIPMP 338
>BP076687
Length = 389
Score = 47.4 bits (111), Expect = 5e-06
Identities = 38/139 (27%), Positives = 67/139 (47%), Gaps = 9/139 (6%)
Frame = -3
Query: 13 SDLPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLH--LKSSLNFK-LILRHK 69
S LP +++ +I LPV+SLLRF+S KS SLI KF H L +S ++ L + +
Sbjct: 387 SHLPEELIPQILLRLPVRSLLRFKSVCKSWLSLISDPKFGKSHYDLAASPTYRCLTIAND 208
Query: 70 TNLYQLDFP----NLTKSIIPLNHPF--TTNIDPFTLNSIKALIGSCNGLLAIYNGPIAF 123
+ + +D N S++ L +P + F+ N++ +G C G + +
Sbjct: 207 SEIGSIDVDAPLLNYESSVVKLKYPLPPPCKLSLFSGNTV-WFLGYCRGFVIVV------ 49
Query: 124 THPNDATEITIWNTNTRKH 142
+ ++ +WN +T H
Sbjct: 48 ---YEQGDVFLWNPSTGVH 1
>AV777665
Length = 425
Score = 46.2 bits (108), Expect = 1e-05
Identities = 23/62 (37%), Positives = 40/62 (64%), Gaps = 5/62 (8%)
Frame = +1
Query: 274 VNNNQSFDLEVAVLGGCLSMIVNYQTTKID-----VWVMKEYGSRDSWCKIFTLVKSRFT 328
V++ F L++ VL CLS+IV+ + + + +WVMKEYG+R+SW K+F + + +
Sbjct: 67 VDHPDMFCLKLEVLRDCLSIIVHVRDFEDNEDYEYLWVMKEYGNRESWTKLFKVPHMKLS 246
Query: 329 LR 330
+R
Sbjct: 247 IR 252
>AV427033
Length = 420
Score = 43.9 bits (102), Expect = 5e-05
Identities = 28/60 (46%), Positives = 31/60 (51%), Gaps = 6/60 (10%)
Frame = +1
Query: 6 PSFLPVASD------LPPDILAEIFSCLPVKSLLRFRSTSKSLRSLIDSHKFINLHLKSS 59
P LP A D LP D++ EI LPV SLL+FR KS SLI KF HL S
Sbjct: 79 PPSLPPAGDSLHAPPLPFDLVVEILCRLPVNSLLQFRCVCKSWNSLISDPKFAKNHLHCS 258
>TC13380
Length = 593
Score = 43.1 bits (100), Expect = 9e-05
Identities = 39/158 (24%), Positives = 70/158 (43%), Gaps = 11/158 (6%)
Frame = +1
Query: 233 SIHWIMEKNLDGSDLCLIVAFNLTLEVFKEVPLPA---VIRGEEVNNNQSFDLEVAVLGG 289
+IHW+ + + G I+AF+L + E+P P ++ + Q F + G
Sbjct: 1 AIHWVAQNFVAGRVTHFIIAFDLMEKRLLEIPQPKPDDLLPQPDDLFPQGFLFYRLWVHG 180
Query: 290 CLSMIVNYQTTKIDVWVMKEYGSRDSWCKIFTLVKSRFTLRLKSLRPLGYSSDGNKVLLQ 349
+ +Q I++WVMK+Y + SW K ++ S K L PL + G+ V+
Sbjct: 181 RFFSLTAFQQDTIEIWVMKKYKVQSSWTKTLVVLSS------KLLYPLCSTKGGDIVMCS 342
Query: 350 -IDCKKLVWYDLKSEQV-------IYVEGIPNLDEAMI 379
I+ K L+ +Q+ + E +P E+M+
Sbjct: 343 GINLTKYSDEGLQGDQLENFDHFGLVNESVPLYTESML 456
>AV765936
Length = 447
Score = 42.7 bits (99), Expect = 1e-04
Identities = 27/99 (27%), Positives = 53/99 (53%), Gaps = 3/99 (3%)
Frame = -2
Query: 294 IVNYQTTKIDVWVMKEYGSRDSWCKIFTLVKSRFTLRLKSLRPLGYSSDGNKVLLQIDCK 353
+ ++ + D+W+MKEYGS++SW K+FT+ + +P S + ++VL+ D
Sbjct: 440 VYSFDSGSCDIWLMKEYGSKESWTKLFTVPNPDGSFSF--TKPFHISKE-DEVLVVND-- 276
Query: 354 KLVWYDLKSEQVIYVEGIPNLDE---AMICVESLVPPSF 389
+V+ + + I N+++ ++ VESL+ P F
Sbjct: 275 GIVYLYNSRDNTFKIFPIQNINDWIVPVVYVESLISPCF 159
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.323 0.140 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,591,375
Number of Sequences: 28460
Number of extensions: 134731
Number of successful extensions: 778
Number of sequences better than 10.0: 70
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of query: 421
length of database: 4,897,600
effective HSP length: 93
effective length of query: 328
effective length of database: 2,250,820
effective search space: 738268960
effective search space used: 738268960
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC149495.11