BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148819.7 - phase: 0
(343 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BP082921 50 5e-07
CN825070 32 0.15
TC14637 weakly similar to UP|FUS_HUMAN (P35637) RNA-binding prot... 29 1.0
TC13206 homologue to UP|Q9AV98 (Q9AV98) UDP-D-glucuronate carbox... 28 2.2
TC8908 similar to UP|Q8LAN0 (Q8LAN0) ATP-dependent Clp protease ... 28 2.9
TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylas... 28 2.9
TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive el... 28 2.9
TC18696 similar to UP|Q40372 (Q40372) Peroxidase precursor, part... 27 3.8
TC15724 similar to UP|Q9LHT0 (Q9LHT0) Short chain alcohol dehydr... 27 6.5
TC16318 weakly similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, part... 26 8.5
TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break re... 26 8.5
AW719741 26 8.5
AU252212 26 8.5
>BP082921
Length = 410
Score = 50.1 bits (118), Expect = 5e-07
Identities = 22/46 (47%), Positives = 30/46 (64%), Gaps = 1/46 (2%)
Frame = -1
Query: 293 WPRRARIILAELQKGKES-WTSVQKIMTWKRLDDEKMSKIDEQILW 337
W RRAR++ L+K + W V+ I TWK LDD ++KID Q+LW
Sbjct: 410 WSRRARVVEISLEKTENGDWEDVKSIRTWKPLDDPYLTKIDGQVLW 273
>CN825070
Length = 634
Score = 32.0 bits (71), Expect = 0.15
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Frame = -3
Query: 234 EGVACSRVNSAVLQTFVSMGDVKAVFIGHDHTNDFCGNLD----GIWFCYGGGFGYHGYG 289
EG AC V++ + +++ ++ + G D T+ F G + G W+C GGGFG+
Sbjct: 209 EGAACGVVSAEICGAELTLAELSSE--GVDFTDVF-GEVGEDRRGFWWCCGGGFGHCCRN 39
Query: 290 KAGWPRRAR 298
+ RR R
Sbjct: 38 RVERERRER 12
>TC14637 weakly similar to UP|FUS_HUMAN (P35637) RNA-binding protein FUS
(Oncogene FUS) (Oncogene TLS) (Translocated in
liposarcoma protein) (POMp75) (75 kDa DNA-pairing
protein), partial (6%)
Length = 1332
Score = 29.3 bits (64), Expect = 1.0
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 270 GNLDGIWFCYGGGFGYHGYGKAGWPRRA 297
G G ++ GGGFGY+G G+ P RA
Sbjct: 926 GRTRGGFYGRGGGFGYYGRGRGRGPFRA 1009
>TC13206 homologue to UP|Q9AV98 (Q9AV98) UDP-D-glucuronate carboxy-lyase ,
partial (51%)
Length = 650
Score = 28.1 bits (61), Expect = 2.2
Identities = 25/111 (22%), Positives = 47/111 (41%), Gaps = 2/111 (1%)
Frame = +2
Query: 171 WIKDSQLHWLRHVSQEPQAQEQDPLHSTDHVTSPITPPALAFFHIPIPEVRQLFYKQIVG 230
WI + +RH EP E D ++ H+ P +P + + + P+ ++ ++G
Sbjct: 347 WIGHPRFELIRHDVTEPLLIEVDQIY---HLACPASP--IFYKYNPVKTIK----TNVIG 499
Query: 231 QFQEGVACSRVNSAVLQTFVSMGDVKAVFIGHDHTNDFCGNLD--GIWFCY 279
RV + +L T S +V + H + GN++ G+ CY
Sbjct: 500 TLNMLGLAKRVGARILLT--STSEVYGDPLLHPQPESYWGNVNPIGVRSCY 646
>TC8908 similar to UP|Q8LAN0 (Q8LAN0) ATP-dependent Clp protease
proteolytic subunit (ClpP4), partial (35%)
Length = 598
Score = 27.7 bits (60), Expect = 2.9
Identities = 10/28 (35%), Positives = 16/28 (56%)
Frame = +2
Query: 180 LRHVSQEPQAQEQDPLHSTDHVTSPITP 207
L HV+++P + PLH T T ++P
Sbjct: 167 LHHVTEQPHSSASSPLHQTTPKTRTLSP 250
>TC14273 similar to UP|DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (GAD
1) , partial (89%)
Length = 1826
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/46 (36%), Positives = 23/46 (49%), Gaps = 1/46 (2%)
Frame = -3
Query: 171 WIKDSQLH-WLRHVSQEPQAQEQDPLHSTDHVTSPITPPALAFFHI 215
W ++ Q H W H+ PQ E PLHS H SP++ P + I
Sbjct: 702 WNQE*QQHKWCSHLPN-PQPFE-GPLHSIPHSASPLSTPPQSILQI 571
>TC15981 similar to UP|ERF3_ARATH (O80339) Ethylene responsive element
binding factor 3 (AtERF3), partial (45%)
Length = 671
Score = 27.7 bits (60), Expect = 2.9
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 287 GYGKAGWPRRARIILAELQKGKESWTS 313
G G A PRR ++ E+++ K++W S
Sbjct: 221 GVGSATLPRRMVVVTGEIRRNKKNWLS 141
>TC18696 similar to UP|Q40372 (Q40372) Peroxidase precursor, partial (47%)
Length = 500
Score = 27.3 bits (59), Expect = 3.8
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = -1
Query: 150 LNLFFLDSGDRVVYQGIRTYDWIKDSQLHWLRHVSQEPQ 188
L+LF L + + QG+ W+++ +L WLR++ +PQ
Sbjct: 473 LHLFCLTT---LCTQGLDLPKWLQNHELLWLRYLHMKPQ 366
>TC15724 similar to UP|Q9LHT0 (Q9LHT0) Short chain alcohol
dehydrogenase-like, partial (81%)
Length = 1014
Score = 26.6 bits (57), Expect = 6.5
Identities = 13/34 (38%), Positives = 17/34 (49%), Gaps = 5/34 (14%)
Frame = -2
Query: 187 PQAQEQDPLHSTD-----HVTSPITPPALAFFHI 215
P + PLHS + H T P+ PP A FH+
Sbjct: 248 PLSMHSAPLHS*NKCTQ*HQTQPVPPPQRARFHV 147
>TC16318 weakly similar to UP|Q9LUT3 (Q9LUT3) Gb|AAD28294.1, partial (20%)
Length = 550
Score = 26.2 bits (56), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -2
Query: 184 SQEPQAQEQDPLHSTDHVTSPITPPALAFFHIPI 217
SQ+P Q + L H +PI PP +F PI
Sbjct: 513 SQKPLLQTRKCLSHCIHYMNPIVPPIQSFGQTPI 412
>TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break repair
protein MRE11, partial (23%)
Length = 805
Score = 26.2 bits (56), Expect = 8.5
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = +3
Query: 32 RVIQDETPDFIAFTGDNIFGPSSHDAAESMFKAFGPAMESGLPWAAILGNHDQES---TL 88
+V+ D+T +F N FG +++ P GLP I GNHD + L
Sbjct: 549 QVVSDQTLNF-----QNTFGHVNYE---------DPHFNVGLPVFTIHGNHDDPAGVDNL 686
Query: 89 NREELMSLISLMDY 102
+ +++S +L++Y
Sbjct: 687 SVVDILSACNLVNY 728
>AW719741
Length = 413
Score = 26.2 bits (56), Expect = 8.5
Identities = 13/34 (38%), Positives = 17/34 (49%)
Frame = -2
Query: 270 GNLDGIWFCYGGGFGYHGYGKAGWPRRARIILAE 303
G L G W GG G+HG+ W RR ++ E
Sbjct: 193 GELKGPWNLKGGDGGWHGW----WRRRGIVMRIE 104
>AU252212
Length = 350
Score = 26.2 bits (56), Expect = 8.5
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -3
Query: 72 GLPWAAILGNHDQ 84
GLPWA I NHDQ
Sbjct: 126 GLPWAPIQRNHDQ 88
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.321 0.137 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,396,525
Number of Sequences: 28460
Number of extensions: 89670
Number of successful extensions: 499
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 496
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of query: 343
length of database: 4,897,600
effective HSP length: 91
effective length of query: 252
effective length of database: 2,307,740
effective search space: 581550480
effective search space used: 581550480
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148819.7