BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148718.5 + phase: 0
(344 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC12250 weakly similar to GB|AAP21346.1|30102856|BT006538 At3g60... 208 9e-55
TC13364 similar to UP|Q9LUM3 (Q9LUM3) Subtilisin proteinase-like... 31 0.35
BP052105 29 1.3
TC14754 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, par... 28 1.7
TC14757 similar to UP|O04361 (O04361) Prohibitin, complete 28 1.7
TC14869 28 2.9
TC9359 similar to UP|Q8S0T6 (Q8S0T6) OJ1414_E05.5 protein, parti... 28 2.9
TC11264 similar to UP|Q84SA6 (Q84SA6) Serine/threonine protein k... 28 2.9
BP056560 28 2.9
TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (... 27 3.8
AV413391 27 5.0
TC14621 weakly similar to UP|Q9LHB1 (Q9LHB1) Transcription facto... 27 6.5
AW164114 26 8.5
BP057980 26 8.5
TC13273 weakly similar to UP|Q84TE4 (Q84TE4) At4g12510, partial ... 26 8.5
BP075190 26 8.5
>TC12250 weakly similar to GB|AAP21346.1|30102856|BT006538 At3g60590
{Arabidopsis thaliana;}, partial (58%)
Length = 440
Score = 208 bits (530), Expect = 9e-55
Identities = 99/119 (83%), Positives = 110/119 (92%)
Frame = +1
Query: 222 GFLQPQLPFISSAVLLGPYLLLLSVQILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGL 281
G QPQLP IS AVLLGPYLLLLSV+ILT++LTW+WQSPVWLVTPIIYE+YR+LQLMRGL
Sbjct: 7 GTRQPQLPSISFAVLLGPYLLLLSVKILTKMLTWHWQSPVWLVTPIIYESYRVLQLMRGL 186
Query: 282 KLGAELTAPAWMMHTIRGLVCWWVLILGLQLMRVAWFAGLSARARKDQSSSSEASTANG 340
KLG EL+APAW+MH+IRGLVCWWVLILGLQLMRVAWFAGL+ARARK Q SSS+ S ANG
Sbjct: 187 KLGVELSAPAWIMHSIRGLVCWWVLILGLQLMRVAWFAGLTARARKQQQSSSDTSIANG 363
>TC13364 similar to UP|Q9LUM3 (Q9LUM3) Subtilisin proteinase-like protein,
partial (13%)
Length = 514
Score = 30.8 bits (68), Expect = 0.35
Identities = 26/82 (31%), Positives = 34/82 (40%)
Frame = +2
Query: 3 SSLIHTHYKLHTSTFERAYPRSHGLLKSGKPFQSRRFNFPSIRLNQSFICCTKLTPWEPS 62
SSL H+HY LH H L + KP S+ PS+ +Q T P PS
Sbjct: 107 SSLPHSHYHLH----------HHLLTQKSKPSSSKSNMKPSLPFSQPISTGTS-PPSPPS 253
Query: 63 PGVAYAPTDNQSDNFLQSTASV 84
P T + + L ST S+
Sbjct: 254 PPPQLPLTKSSTPTTLFSTVSL 319
>BP052105
Length = 372
Score = 28.9 bits (63), Expect = 1.3
Identities = 12/13 (92%), Positives = 13/13 (99%)
Frame = -2
Query: 314 RVAWFAGLSARAR 326
RVAWFAGL+ARAR
Sbjct: 371 RVAWFAGLTARAR 333
>TC14754 similar to UP|Q9ZTX0 (Q9ZTX0) Similarity to SCAMP37, partial (38%)
Length = 651
Score = 28.5 bits (62), Expect = 1.7
Identities = 9/19 (47%), Positives = 16/19 (83%)
Frame = +3
Query: 259 SPVWLVTPIIYEAYRILQL 277
S +W+V P++Y+++RIL L
Sbjct: 30 SEIWMVFPVLYDSHRILHL 86
>TC14757 similar to UP|O04361 (O04361) Prohibitin, complete
Length = 1141
Score = 28.5 bits (62), Expect = 1.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 66 AYAPTDNQSDNFLQSTASVFETLESSKVDESPTANVEGLVEEKDRPGPELQLFKW 120
A AP+ + +T S E + SS +PT++ L P P ++ +W
Sbjct: 148 ASAPSSSTDSAASSTTPSAKEPISSSHGSRNPTSSTSALAPTPSPPSPAPRISRW 312
>TC14869
Length = 828
Score = 27.7 bits (60), Expect = 2.9
Identities = 22/79 (27%), Positives = 38/79 (47%)
Frame = +3
Query: 226 PQLPFISSAVLLGPYLLLLSVQILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGA 285
P LPF ++ LLLL + L++ SP+ L+ PI + + LQ + L G
Sbjct: 126 PSLPFSATMASSSSSLLLLLCFSILSLVSSSSSSPISLLLPITKD-HSTLQYLTTLSTGT 302
Query: 286 ELTAPAWMMHTIRGLVCWW 304
+AP ++ + G + W+
Sbjct: 303 P-SAPTNLVLDLGGSLPWF 356
>TC9359 similar to UP|Q8S0T6 (Q8S0T6) OJ1414_E05.5 protein, partial (49%)
Length = 828
Score = 27.7 bits (60), Expect = 2.9
Identities = 12/31 (38%), Positives = 22/31 (70%)
Frame = +1
Query: 238 GPYLLLLSVQILTELLTWYWQSPVWLVTPII 268
G +L LS+Q+ T +L W+ ++ VW +TP++
Sbjct: 499 GTLMLSLSMQMRT-MLGWFLRTLVWRMTPLV 588
>TC11264 similar to UP|Q84SA6 (Q84SA6) Serine/threonine protein kinase,
partial (24%)
Length = 1156
Score = 27.7 bits (60), Expect = 2.9
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -3
Query: 96 SPTANVEGLVEEKDRPGPELQLFKWPMWLL 125
S T N + +K++ L LFKWP W L
Sbjct: 1085 SNTFNSTLKINQKEKNTAHLALFKWPFWKL 996
>BP056560
Length = 460
Score = 27.7 bits (60), Expect = 2.9
Identities = 17/37 (45%), Positives = 20/37 (53%)
Frame = +2
Query: 72 NQSDNFLQSTASVFETLESSKVDESPTANVEGLVEEK 108
NQ DNFL STA+ F ESS +PT G + K
Sbjct: 227 NQKDNFLASTANFF---ESSSPASNPTHYKHGQGKRK 328
>TC12874 similar to UP|Q9SSY8 (Q9SSY8) Hsr203J homolog, partial (42%)
Length = 512
Score = 27.3 bits (59), Expect = 3.8
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Frame = +1
Query: 23 RSHGLLKSGKPFQSRRFNFPSIRLNQSFICCTKLTP---WEPSPGVA 66
R H ++ + P+ S S +N++ C TK TP +P P V+
Sbjct: 286 RKHRMINTSYPYSSTFTEADSALVNRTVSCTTKSTPDSSGQPGPSVS 426
>AV413391
Length = 428
Score = 26.9 bits (58), Expect = 5.0
Identities = 14/55 (25%), Positives = 21/55 (37%)
Frame = +1
Query: 250 TELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGAELTAPAWMMHTIRGLVCWW 304
T T +W++P W TP + + R T + +RG CWW
Sbjct: 154 TAATTRWWRTPAW--TPCTFPSLRAS------------TCGGRLRRRVRGSTCWW 276
>TC14621 weakly similar to UP|Q9LHB1 (Q9LHB1) Transcription factor X1-like
protein, partial (10%)
Length = 1079
Score = 26.6 bits (57), Expect = 6.5
Identities = 12/43 (27%), Positives = 25/43 (57%)
Frame = -1
Query: 165 FNLGATLFLLMADSCSRPKNPTQEIKSKAPFSYQFWNIVATLT 207
F+ +L +L +C++PK+ + I + P +F+NI ++T
Sbjct: 767 FDRWNSLQMLSLSACTQPKSWHKAIPPQVPTQIKFYNIPISIT 639
>AW164114
Length = 297
Score = 26.2 bits (56), Expect = 8.5
Identities = 12/37 (32%), Positives = 19/37 (50%), Gaps = 1/37 (2%)
Frame = -1
Query: 111 PGPELQLFKWPMW-LLGPSILLATGMVPTLWLPISSI 146
P L W +W +L + + M+P +WLP SS+
Sbjct: 168 PWAVFSLAAWAVWAVLSLAAWAFSPMLPIIWLPFSSV 58
>BP057980
Length = 491
Score = 26.2 bits (56), Expect = 8.5
Identities = 18/45 (40%), Positives = 23/45 (51%)
Frame = +1
Query: 135 MVPTLWLPISSIFLGPNIASLLSLIGLDCIFNLGATLFLLMADSC 179
MVP+ LPI LGPN ++ S GL C+ + L LL C
Sbjct: 283 MVPST-LPIR--ILGPNNIAIHSRPGLSCLLHPPKVLLLLFT*DC 408
>TC13273 weakly similar to UP|Q84TE4 (Q84TE4) At4g12510, partial (18%)
Length = 619
Score = 26.2 bits (56), Expect = 8.5
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = +3
Query: 245 SVQILTELLTWYWQSPVWLVTPIIYEAYRILQLMRGLKLGAELTAPAWMMHTIRGLVCWW 304
SVQ L +LT + W ++ + ++++ MR +L W + + GL+CW
Sbjct: 222 SVQYLATVLTDCYHLLKW---SLMLSSSKVVRQMRQNRL--------WDLAVLHGLICWD 368
Query: 305 VLIL 308
++L
Sbjct: 369 TIVL 380
>BP075190
Length = 512
Score = 26.2 bits (56), Expect = 8.5
Identities = 8/26 (30%), Positives = 19/26 (72%)
Frame = -2
Query: 240 YLLLLSVQILTELLTWYWQSPVWLVT 265
+LL++ V+++ L++W W++ W V+
Sbjct: 244 FLLII*VRLV*LLISWLWETSFWAVS 167
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.430
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,073,043
Number of Sequences: 28460
Number of extensions: 112308
Number of successful extensions: 681
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of query: 344
length of database: 4,897,600
effective HSP length: 91
effective length of query: 253
effective length of database: 2,307,740
effective search space: 583858220
effective search space used: 583858220
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Medicago: description of AC148718.5