BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148718.4 + phase: 0
(324 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC19167 157 3e-39
TC16428 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase... 32 0.19
TC8547 homologue to UP|MMK1_MEDSA (Q07176) Mitogen-activated pro... 28 2.1
TC19962 27 3.6
TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired re... 27 3.6
BP076640 27 3.6
TC8909 similar to UP|Q9FIJ4 (Q9FIJ4) Gb|AAF26028.1, partial (69%) 27 3.6
TC8968 homologue to UP|Q41619 (Q41619) Protein kinase (Fragment)... 27 3.6
BP040015 27 4.7
TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2,... 27 6.1
TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (L... 27 6.1
AV414256 26 8.0
TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcripti... 26 8.0
TC16159 homologue to UP|Q94A23 (Q94A23) AT5g64310/MSJ1_15, parti... 26 8.0
AV769348 26 8.0
>TC19167
Length = 512
Score = 157 bits (396), Expect = 3e-39
Identities = 71/87 (81%), Positives = 79/87 (90%)
Frame = +2
Query: 238 AGEDVWKEFFQYCRESKFIHITSIDFTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIP 297
+G+DVWKEF+QY RESKFIHI +IDFTLLSTLAPFWVYNDMT RKWFDKGSWLLPVSLIP
Sbjct: 2 SGDDVWKEFYQYFRESKFIHIMTIDFTLLSTLAPFWVYNDMTTRKWFDKGSWLLPVSLIP 181
Query: 298 LLGPALYILLRPSLSTSAVAQSPAESE 324
LGP LY+LLRPSLST A++Q+P E E
Sbjct: 182 FLGPGLYLLLRPSLSTMAISQTPVEPE 262
>TC16428 similar to UP|Q9STI6 (Q9STI6) Nucleotide sugar epimerase-like
protein, partial (21%)
Length = 551
Score = 31.6 bits (70), Expect = 0.19
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = +1
Query: 177 LSASFFGGIYALLPYFVLWKPPPPPVEEAEL--KTWPLNFLESKITAMILLASGIGI-II 233
L +SFF LL +F+L PPPPP + +W E ++ S G+ ++
Sbjct: 166 LCSSFFLAFTLLLFFFILSPPPPPPAAPRRVLGDSWGGPLWEKRVAKSARRTSASGLTVL 345
Query: 234 YAGLAG 239
G AG
Sbjct: 346 VTGAAG 363
>TC8547 homologue to UP|MMK1_MEDSA (Q07176) Mitogen-activated protein kinase
homolog MMK1 (MAP kinase MSK7) (MAP kinase ERK1) ,
partial (71%)
Length = 1098
Score = 28.1 bits (61), Expect = 2.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 90 DWTTSILLFLLWAALIYYVSFLSPNQTPS 118
DW T I+ +L WA+L+ ++ +L PN S
Sbjct: 982 DWYT-IIRYLYWASLLLHIHWLVPNSDKS 1065
>TC19962
Length = 374
Score = 27.3 bits (59), Expect = 3.6
Identities = 14/34 (41%), Positives = 17/34 (49%)
Frame = -2
Query: 168 KSSVPVWPFLSASFFGGIYALLPYFVLWKPPPPP 201
K+ P +P S+SFF L P PPPPP
Sbjct: 235 KTQAP*FPSSSSSFFSSHSHLTPPSPANPPPPPP 134
>TC16246 weakly similar to UP|Q8S2M2 (Q8S2M2) Far-red impaired response
protein-like, partial (4%)
Length = 660
Score = 27.3 bits (59), Expect = 3.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -1
Query: 270 APFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLS 312
+PFW+ + W DK + P P GP++ ++ +L+
Sbjct: 150 SPFWILSLFGFAMWLDKSVXVKPNDSCPPFGPSIKAMIWQALT 22
>BP076640
Length = 542
Score = 27.3 bits (59), Expect = 3.6
Identities = 17/45 (37%), Positives = 23/45 (50%)
Frame = -1
Query: 177 LSASFFGGIYALLPYFVLWKPPPPPVEEAELKTWPLNFLESKITA 221
L SFFG + ++P F+ WK P V + F +SKITA
Sbjct: 140 LGGSFFGFMGPIIPCFLNWKRTQPQV*FTAVN---CVFCQSKITA 15
>TC8909 similar to UP|Q9FIJ4 (Q9FIJ4) Gb|AAF26028.1, partial (69%)
Length = 1000
Score = 27.3 bits (59), Expect = 3.6
Identities = 14/43 (32%), Positives = 22/43 (50%)
Frame = -3
Query: 151 FWPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALLPYFV 193
F+P + +LLL + + SVP+ PF S + LP+ V
Sbjct: 236 FFPSLLLLLLLRSREHFRESVPIRPFTPKSLLTNPSSRLPFLV 108
>TC8968 homologue to UP|Q41619 (Q41619) Protein kinase (Fragment), partial
(32%)
Length = 612
Score = 27.3 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -3
Query: 242 VWKEFFQYCRESKFIHITSIDFTLLSTLAP 271
+WK+ FQ+C S HITS + + S+ AP
Sbjct: 376 IWKQHFQFCYISS-QHITSQEMGIASSHAP 290
>BP040015
Length = 529
Score = 26.9 bits (58), Expect = 4.7
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Frame = -3
Query: 134 DGFRMNEVLVSEWYIMGF----WPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALL 189
+GF E+LVS W+ +GF +P P K + V+P L GG +
Sbjct: 485 NGFPNGEILVSSWWRLGFEEVEYPWGKPKYCCPVVHHRKDIILVFPPLREGSGGGSDSGD 306
Query: 190 PYFVLWKPPPPPVEE 204
V+ PP +E+
Sbjct: 305 GVSVIVALPPEDMEK 261
>TC17497 UP|CAE45595 (CAE45595) S-receptor kinase-like protein 2, complete
Length = 2946
Score = 26.6 bits (57), Expect = 6.1
Identities = 16/52 (30%), Positives = 26/52 (49%)
Frame = -2
Query: 263 FTLLSTLAPFWVYNDMTARKWFDKGSWLLPVSLIPLLGPALYILLRPSLSTS 314
FT+ + W N + K F P +L+P+ GPAL ++ P ++TS
Sbjct: 890 FTVSYSKEISWSVNCIKNVKIFCSTCPKAPENLLPVHGPALKVIAAPFVTTS 735
>TC9430 similar to UP|Q96569 (Q96569) L-lactate dehydrogenase (LDH) ,
partial (49%)
Length = 866
Score = 26.6 bits (57), Expect = 6.1
Identities = 16/63 (25%), Positives = 26/63 (40%)
Frame = -2
Query: 152 WPLVYSMLLLPTGRSSKSSVPVWPFLSASFFGGIYALLPYFVLWKPPPPPVEEAELKTWP 211
W + +PT + + + VW + + L +V KPP P VE EL
Sbjct: 403 WVRTV*AMAMPTLPAPMTEILVWRLVGEGGAA*VMGLKKVWVRSKPPGPRVEPEELLCMV 224
Query: 212 LNF 214
++F
Sbjct: 223 MSF 215
>AV414256
Length = 200
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 302 ALYILLRPSLSTSAVAQSPAES 323
A+++LL L +SAVAQSPA S
Sbjct: 62 AVFMLLAALLVSSAVAQSPASS 127
>TC14319 similar to UP|AP23_ARATH (P42736) AP2 domain transcription factor
RAP2.3 (Related to AP2 protein 3) (Cadmium-induced
protein AS30), partial (37%)
Length = 1130
Score = 26.2 bits (56), Expect = 8.0
Identities = 12/46 (26%), Positives = 22/46 (47%)
Frame = -2
Query: 45 LVAMKTPFVAATTSFRRKSSSSSIVICNDSNKQNSSVEEKEEVKRD 90
L AMK+ +A R + +S C D N+ N ++ + +R+
Sbjct: 142 LTAMKSEMIAPPHMSREREKINSTCRCYDDNESNGGKNKENKSERE 5
>TC16159 homologue to UP|Q94A23 (Q94A23) AT5g64310/MSJ1_15, partial (19%)
Length = 605
Score = 26.2 bits (56), Expect = 8.0
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +2
Query: 302 ALYILLRPSLSTSAVAQSPAES 323
A+++LL L +SAVAQSPA S
Sbjct: 62 AVFMLLAALLVSSAVAQSPASS 127
>AV769348
Length = 566
Score = 26.2 bits (56), Expect = 8.0
Identities = 15/40 (37%), Positives = 24/40 (59%)
Frame = -3
Query: 92 TTSILLFLLWAALIYYVSFLSPNQTPSRDMYFLKKLLNLK 131
++S++LFLLW L+ Y S L +P + LK L+L+
Sbjct: 390 SSSVILFLLW--LM*YYSCLENLHSPDPFTFLLKVCLSLE 277
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.322 0.137 0.428
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,486,194
Number of Sequences: 28460
Number of extensions: 126641
Number of successful extensions: 981
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 978
length of query: 324
length of database: 4,897,600
effective HSP length: 90
effective length of query: 234
effective length of database: 2,336,200
effective search space: 546670800
effective search space used: 546670800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Medicago: description of AC148718.4