BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148528.1 + phase: 0
(131 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BI419711 28 0.67
TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium t... 27 0.88
TC14497 26 2.0
AV426207 26 2.0
BP036451 25 3.3
AV766168 25 4.4
AV766036 25 5.7
TC14241 homologue to UP|Q9XQB4 (Q9XQB4) Photosystem I reaction c... 25 5.7
BP061495 24 7.4
TC19540 weakly similar to PIR|H86283|H86283 protein T15D22.8 [im... 24 7.4
TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break re... 24 7.4
NP459570 hypothetical protein [Lotus japonicus] 24 7.4
TC18222 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32),... 24 7.4
TC9234 homologue to UP|Q7PX09 (Q7PX09) AgCP12481 (Fragment), par... 24 9.7
AV767642 24 9.7
TC13975 24 9.7
BP033071 24 9.7
TC15916 similar to GB|AAM16242.1|20334762|AY093981 AT4g01090/F2N... 24 9.7
BP063536 24 9.7
>BI419711
Length = 539
Score = 27.7 bits (60), Expect = 0.67
Identities = 11/24 (45%), Positives = 15/24 (61%)
Frame = +1
Query: 93 HILTERERRKKMRNMFDSLHALLP 116
HI ER RRK+M +L +L+P
Sbjct: 403 HIAVERNRRKQMNEYLSALRSLMP 474
>TC8661 weakly similar to UP|O81348 (O81348) Symbiotic ammonium
transporter, partial (34%)
Length = 1007
Score = 27.3 bits (59), Expect = 0.88
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 93 HILTERERRKKMRNMFDSLHALLPEL 118
HI+ ER RR+K+ +L AL+P L
Sbjct: 31 HIIAERRRREKLSQSLIALAALIPGL 108
>TC14497
Length = 874
Score = 26.2 bits (56), Expect = 2.0
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -1
Query: 91 EMHILTERERRKKMRNMFDSLHALLPELPSKVNSFSSSISS 131
E H ERERR++MR + L KVN+ + SI++
Sbjct: 226 EAHANVERERRERMRRKQWNERTWLVNANGKVNNTTLSINN 104
>AV426207
Length = 359
Score = 26.2 bits (56), Expect = 2.0
Identities = 16/54 (29%), Positives = 25/54 (45%)
Frame = +3
Query: 34 ESSKKRVDTKPLNQNEGINEAEAPVSKKRNWGGVVIRSENNITTGEEKDKKYRD 87
E + K+ TKP+ + G S+K N+GG + E + DKK+ D
Sbjct: 36 ERNGKQELTKPVKVDRG--------SRKANFGGERLSQEVTLFKNNPSDKKFAD 173
>BP036451
Length = 511
Score = 25.4 bits (54), Expect = 3.3
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +2
Query: 96 TERERRKKMRNMFDSLHALLPELPSKVNSFS 126
TE+ERR+++ + L +L+P P+K++ S
Sbjct: 332 TEKERREQLNGKYKILRSLIPS-PTKIDRAS 421
>AV766168
Length = 369
Score = 25.0 bits (53), Expect = 4.4
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 19 NHLWGDLPNSDHNLGESSKKRVDTKPLNQNE 49
NH+WG + HN K + T+ NQ +
Sbjct: 5 NHMWGQFQFNTHNHLPLEGKSIQTRQNNQKK 97
>AV766036
Length = 518
Score = 24.6 bits (52), Expect = 5.7
Identities = 13/43 (30%), Positives = 23/43 (53%), Gaps = 6/43 (13%)
Frame = +1
Query: 30 HNLGESS------KKRVDTKPLNQNEGINEAEAPVSKKRNWGG 66
+NLG++S K +D KPLN + G+ + + ++GG
Sbjct: 61 YNLGDASTDPKPQKT*LDPKPLNHDSGLTPKNSKNTFSAHYGG 189
>TC14241 homologue to UP|Q9XQB4 (Q9XQB4) Photosystem I reaction center
subunit III, partial (86%)
Length = 1081
Score = 24.6 bits (52), Expect = 5.7
Identities = 9/22 (40%), Positives = 14/22 (62%)
Frame = -3
Query: 103 KMRNMFDSLHALLPELPSKVNS 124
++ N FDSLH + PE+ + S
Sbjct: 347 RLANCFDSLHGVRPEISATAGS 282
>BP061495
Length = 325
Score = 24.3 bits (51), Expect = 7.4
Identities = 10/31 (32%), Positives = 14/31 (44%)
Frame = +1
Query: 19 NHLWGDLPNSDHNLGESSKKRVDTKPLNQNE 49
NH+WG + HN K + T+ N E
Sbjct: 25 NHMWGQFQFNTHNHLPLEGKSIQTRQNNPEE 117
>TC19540 weakly similar to PIR|H86283|H86283 protein T15D22.8 [imported] -
Arabidopsis thaliana {Arabidopsis thaliana;}, partial
(16%)
Length = 594
Score = 24.3 bits (51), Expect = 7.4
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = +3
Query: 111 LHALLPELPSKVNSFS 126
L LLP+LP VNSF+
Sbjct: 15 LECLLPDLPFSVNSFT 62
>TC12618 similar to UP|MR11_ARATH (Q9XGM2) Double-strand break repair
protein MRE11, partial (23%)
Length = 805
Score = 24.3 bits (51), Expect = 7.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = +2
Query: 16 IWENHLWGDLPNSDHNLGESSKKRVDTKPLNQNEGIN 52
+WEN WG SDH +KP + EG N
Sbjct: 728 LWENSSWGFWCWSDH-----------SKPYSYQEGFN 805
>NP459570 hypothetical protein [Lotus japonicus]
Length = 972
Score = 24.3 bits (51), Expect = 7.4
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 10 GVQTGFIWENHLWGDLPNSD 29
G+ +G +W N WG N D
Sbjct: 718 GILSGAVWANEAWGSYWNWD 777
>TC18222 similar to UP|SY32_ARATH (Q9LK09) Syntaxin 32 (AtSYP32), partial
(37%)
Length = 493
Score = 24.3 bits (51), Expect = 7.4
Identities = 9/17 (52%), Positives = 12/17 (69%)
Frame = +2
Query: 85 YRDFDHEMHILTERERR 101
YRD HE H +TER ++
Sbjct: 11 YRDRTHEFHSITERLKK 61
>TC9234 homologue to UP|Q7PX09 (Q7PX09) AgCP12481 (Fragment), partial (6%)
Length = 607
Score = 23.9 bits (50), Expect = 9.7
Identities = 12/32 (37%), Positives = 19/32 (58%)
Frame = +2
Query: 60 KKRNWGGVVIRSENNITTGEEKDKKYRDFDHE 91
K+++ V+ + + I GE+ D K RDFD E
Sbjct: 185 KEKSIPYVLAQIDTCIQYGEDADVKVRDFDPE 280
>AV767642
Length = 502
Score = 23.9 bits (50), Expect = 9.7
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = -2
Query: 73 NNITTGEEKDKKYRDFDHE 91
N+ TGEE + + D+ HE
Sbjct: 393 NDRRTGEESSRSHHDYQHE 337
>TC13975
Length = 402
Score = 23.9 bits (50), Expect = 9.7
Identities = 9/26 (34%), Positives = 16/26 (60%)
Frame = -2
Query: 34 ESSKKRVDTKPLNQNEGINEAEAPVS 59
E+ + R T+PL +EG+ ++ P S
Sbjct: 137 ENQRSRFQTRPLPMSEGLPPSQMPSS 60
>BP033071
Length = 539
Score = 23.9 bits (50), Expect = 9.7
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +2
Query: 100 RRKKMRNMFDSLHALLPELPSKVNSFSSSISS 131
RR+ +F + P LPS + SFSS SS
Sbjct: 236 RRRHHHQIFSFILHQSPPLPSYIPSFSSPSSS 331
>TC15916 similar to GB|AAM16242.1|20334762|AY093981 AT4g01090/F2N1_13
{Arabidopsis thaliana;}, partial (10%)
Length = 555
Score = 23.9 bits (50), Expect = 9.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = -2
Query: 3 KSVDHDQGVQTGFIWENHLWGDLPNSDHN 31
K + DQG+ F+ ++ LP+++HN
Sbjct: 515 KLIQTDQGINYNFLHITSIFLKLPDANHN 429
>BP063536
Length = 504
Score = 23.9 bits (50), Expect = 9.7
Identities = 8/11 (72%), Positives = 11/11 (99%)
Frame = +3
Query: 2 AKSVDHDQGVQ 12
+K++DHDQGVQ
Sbjct: 357 SKTIDHDQGVQ 389
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,193,711
Number of Sequences: 28460
Number of extensions: 23826
Number of successful extensions: 125
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of query: 131
length of database: 4,897,600
effective HSP length: 80
effective length of query: 51
effective length of database: 2,620,800
effective search space: 133660800
effective search space used: 133660800
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.9 bits)
Medicago: description of AC148528.1