TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148487.1 - phase: 1 
         (63 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC11371 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, partia...    26  1.7
BP041305                                                               25  3.0
AV772856                                                               25  3.9
BP080089                                                               24  6.6

>TC11371 similar to UP|Q8S9K1 (Q8S9K1) At1g23880/T23E23_8, partial (41%)
          Length = 1023

 Score = 25.8 bits (55), Expect = 1.7
 Identities = 11/48 (22%), Positives = 22/48 (44%)
 Frame = -2

Query: 2   SSWPELVGVEGKVAEATIQRENPLVDAIIVPEGSSVPFDFRCDRVWVW 49
           +SW   +    + + A+I  +NP   ++ +P G+ +P        W W
Sbjct: 932 ASWDATIVPSRRCSNASIYPKNPAATSMAIPSGNPLP***AQSSKWSW 789


>BP041305 
          Length = 322

 Score = 25.0 bits (53), Expect = 3.0
 Identities = 12/38 (31%), Positives = 21/38 (54%)
 Frame = -3

Query: 1   KSSWPELVGVEGKVAEATIQRENPLVDAIIVPEGSSVP 38
           K++WPE VG++G   E   + ++P  +      GS +P
Sbjct: 167 KATWPEGVGIDGGWLEDLARLDDPFGE---YGSGSDIP 63


>AV772856 
          Length = 468

 Score = 24.6 bits (52), Expect = 3.9
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = -3

Query: 7   LVGVEGKVAEATIQRENPLVDAIIVPEGSSVPFDFR 42
           LV  EGK       + N L+     P+GS+VP DFR
Sbjct: 457 LVKEEGKKFRENCSQMNRLIQTPAGPKGSAVP-DFR 353


>BP080089 
          Length = 392

 Score = 23.9 bits (50), Expect = 6.6
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 3   SWPELVGVEGKVAEATIQRENPLVDAIIVPEGSSVPFDFRCDRV 46
           +W +  G+   ++   +   NPL  +I+V   S V     C+RV
Sbjct: 136 TWADKHGLRVTLSGEALMLVNPLCSSILVGPPSRVTISKPCNRV 267


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.318    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,259,154
Number of Sequences: 28460
Number of extensions: 12619
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of query: 63
length of database: 4,897,600
effective HSP length: 39
effective length of query: 24
effective length of database: 3,787,660
effective search space: 90903840
effective search space used: 90903840
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)