TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148483.5 + phase: 0 /pseudo
         (281 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

AV427921                                                               28  1.3
BP038231                                                               27  5.1

>AV427921 
          Length = 284

 Score = 28.5 bits (62), Expect = 1.3
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +1

Query: 260 TERKNRTLKNMVRSML 275
           +ERKNRT+ NMVRS+L
Sbjct: 43  SERKNRTILNMVRSLL 90


>BP038231 
          Length = 513

 Score = 26.6 bits (57), Expect = 5.1
 Identities = 14/62 (22%), Positives = 37/62 (59%)
 Frame = -1

Query: 42  IEQLCLRKILENVYHDERGIVMSTQMSTNRMFMISAPIIVPESLKLKNVKMLRYGIIDMA 101
           + ++ +R IL  + +  RG++ +  MST  +  +++P++ P+ L  + +KM +  I+ + 
Sbjct: 420 VRRMTMRNIL--MTNITRGVLSTMMMSTELLGQLASPLVTPQ-LIARKMKMWKSMILMLV 250

Query: 102 IL 103
           ++
Sbjct: 249 LV 244


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.355    0.157    0.501 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,838,676
Number of Sequences: 28460
Number of extensions: 43782
Number of successful extensions: 449
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 449
length of query: 281
length of database: 4,897,600
effective HSP length: 89
effective length of query: 192
effective length of database: 2,364,660
effective search space: 454014720
effective search space used: 454014720
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 14 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 37 (21.6 bits)
S2: 55 (25.8 bits)