
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AC148341.11 - phase: 0
(164 letters)
Database: LJGI
28,460 sequences; 14,692,800 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (... 251 3e-68
TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial... 251 6e-68
TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%) 84 9e-18
TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%) 63 3e-11
BP064757 55 8e-09
TC10624 44 2e-05
CB827481 43 3e-05
AW428720 40 2e-04
TC10641 31 0.093
TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase car... 26 3.0
TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at... 25 5.1
BP062602 25 8.7
AU252156 25 8.7
>TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
Length = 749
Score = 251 bits (642), Expect = 3e-68
Identities = 122/159 (76%), Positives = 143/159 (89%)
Frame = +1
Query: 5 VESSTATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMV 64
V +S+ KK+TLKSSD E FE+++ VALESQTIKH+++D+CAD SGIPLPNVT KILA V
Sbjct: 49 VMASSPPKKVTLKSSDGEAFEVDEVVALESQTIKHMVEDDCAD-SGIPLPNVTSKILARV 225
Query: 65 IEHCKKHVDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTV 124
IE+CKKHV+A+SS EKP+E+E+ +WD EFVKVDQ TLFDLILAANYLNIKSLLDLTC+TV
Sbjct: 226 IEYCKKHVEASSSGEKPTEEELKQWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 405
Query: 125 ADMIKGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
ADMIKG+TPEEIRKTFNI ND+TPEEEEEVR E QWAF+
Sbjct: 406 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 522
>TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
Length = 810
Score = 251 bits (640), Expect = 6e-68
Identities = 121/155 (78%), Positives = 140/155 (90%)
Frame = +2
Query: 9 TATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHC 68
++ KKITLKSSD E FE+++AVALESQTIKH+++D+CAD SGIPLPNVT KILA VIE+C
Sbjct: 110 SSAKKITLKSSDGEAFEVDEAVALESQTIKHMVEDDCAD-SGIPLPNVTSKILAKVIEYC 286
Query: 69 KKHVDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMI 128
KKHV+A + DEKP+EDE+ WD +FVKVDQ TLFDLILAANYLNIKSLLDLTC+TVADMI
Sbjct: 287 KKHVEAANPDEKPTEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 466
Query: 129 KGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
KG+TPEEIRKTFNI ND+TPEEEEEVR E QWAF+
Sbjct: 467 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 571
>TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
Length = 665
Score = 84.3 bits (207), Expect = 9e-18
Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
Frame = +2
Query: 7 SSTATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSG--IPLPNVTGKILAMV 64
S + +K ITLK++D E F +E ++A E + ++ IDD DD IPLP V+ + L +
Sbjct: 80 SPSLSKTITLKAADGELFRVETSIAKEMKAVEIFIDD---DDKAFIIPLPEVSSQDLVKI 250
Query: 65 IEHCKKHVDATSSDEKPSEDEINKWDTEFVK-VDQDTLFDLILAANYLNIKSLLDLTCKT 123
IE+CK+ A ++ + +D EF K ++ L LI AANYLN+ LLDL +
Sbjct: 251 IEYCKQRRTAANAKD---------FDAEFAKALNNKELLSLIAAANYLNMADLLDLLSQC 403
Query: 124 VADMIKGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
+ D + +T EEE +R E WAF+
Sbjct: 404 IVDRV*NTI-------------FTKEEEASLREEMPWAFE 484
>TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
Length = 433
Score = 62.8 bits (151), Expect = 3e-11
Identities = 44/138 (31%), Positives = 68/138 (48%), Gaps = 3/138 (2%)
Frame = +1
Query: 29 AVALESQTIKHLIDDNCADDSG--IPLPNVTGKILAMVIEHCKKHVDATSSDEKPSEDEI 86
+++ E + ++ IDD DD IPLP V+ + L +IE+CK+ A ++ +
Sbjct: 70 SLSKEMKAVEIFIDD---DDKAFIIPLPEVSSQDLVKIIEYCKQRRTAANAKD------- 219
Query: 87 NKWDTEFVK-VDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKTFNIIND 145
+D EF K ++ L LI AANYLN+ LLDL + + D +
Sbjct: 220 --FDAEFAKALNNKELLSLIAAANYLNMADLLDLLSQCIVDRV*NTI------------- 354
Query: 146 YTPEEEEEVRSETQWAFD 163
+T EEE +R E WAF+
Sbjct: 355 FTKEEEASLREEMPWAFE 408
>BP064757
Length = 401
Score = 54.7 bits (130), Expect = 8e-09
Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Frame = -2
Query: 68 CKKHVDATSS--DEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVA 125
C+K +A+ + E S +I WD EF+ V + L L + A +LNI+SLL L +
Sbjct: 400 CQKSPEASDAHTQEALSGVDIQDWDAEFIDVAHNPLLHLHICAKFLNIQSLLHLPNHAIP 221
Query: 126 DMIKGRTPEEIRKTFNI 142
D +KG+ P IR FN+
Sbjct: 220 DQVKGKAPMVIRPMFNL 170
>TC10624
Length = 396
Score = 43.5 bits (101), Expect = 2e-05
Identities = 22/54 (40%), Positives = 35/54 (64%)
Frame = -3
Query: 91 TEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKTFNIIN 144
+ FVK +Q L AA++LNI +L++LT +T+ DM KG T EEI ++ ++
Sbjct: 394 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYSTLS 233
>CB827481
Length = 556
Score = 42.7 bits (99), Expect = 3e-05
Identities = 21/57 (36%), Positives = 30/57 (51%)
Frame = +2
Query: 14 ITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKK 70
I+LKSSDNE ++ K A + + D+ IP+P VT IL+ + CKK
Sbjct: 386 ISLKSSDNEVLKMNKRAATSQSKVLRDVVDSTGGRDEIPVPGVTSLILSKITSFCKK 556
>AW428720
Length = 352
Score = 40.4 bits (93), Expect = 2e-04
Identities = 24/57 (42%), Positives = 34/57 (59%)
Frame = +1
Query: 10 ATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIE 66
++KKI L SSD + FE++ VAL S+TI+ +I N A S ++ IL VIE
Sbjct: 181 SSKKIRLVSSDGDVFEVDYGVALMSKTIEDVIKSNPAGGSDSIPVFMSSNILGQVIE 351
>TC10641
Length = 636
Score = 31.2 bits (69), Expect = 0.093
Identities = 18/53 (33%), Positives = 25/53 (46%)
Frame = +2
Query: 87 NKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKT 139
N W T FV + L AAN+LNI SL + T +G +I++T
Sbjct: 77 NAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSLFTGLEDRGENENKIQET 235
>TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit beta (ACCASE beta chain) , complete
Length = 1514
Score = 26.2 bits (56), Expect = 3.0
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
Frame = +3
Query: 19 SDNETFEIEKAVAL-ESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKHVDATSS 77
+D++ +IE + L E+Q KHL + C + G+ + K + EHC H+ +SS
Sbjct: 633 NDSDFTKIEGSNDLDETQKYKHLWIE-CENCYGLNYKKIL-KSKMNICEHCGYHLKMSSS 806
Query: 78 DEKPSEDEINKW---DTEFVKVD 97
D + W D + + VD
Sbjct: 807 DRIELSIDPGTWNPMDEDMISVD 875
>TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
subunit precursor, partial (3%)
Length = 1235
Score = 25.4 bits (54), Expect = 5.1
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Frame = +1
Query: 17 KSSDNETFEIEKAVAL-----ESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKH 71
K D E E+ +A + + +++L DDN DD+G+ P G
Sbjct: 562 KDHDGEVKEMWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVE-PGFYGN-----YNEPSSP 723
Query: 72 VDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGR 131
+A ++E +DEIN K ++ +A N+ + L++T + A++ +
Sbjct: 724 GEAPQAEEGEEDDEINDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQG 903
Query: 132 TP 133
P
Sbjct: 904 KP 909
>BP062602
Length = 536
Score = 24.6 bits (52), Expect = 8.7
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -1
Query: 21 NETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKHV 72
N+ E ++ +L + HL + + A + LPN+T I + + +KH+
Sbjct: 266 NKNLEYQELSSLIICRVYHLTETHTAQVVSLHLPNITLVIFLIQVVISQKHL 111
>AU252156
Length = 350
Score = 24.6 bits (52), Expect = 8.7
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +2
Query: 124 VADMIKGRTPEEIRKTFNII 143
VA + G+TPEE++K + ++
Sbjct: 242 VAHAVGGKTPEEVKKHYELL 301
Database: LJGI
Posted date: Jul 30, 2004 11:16 AM
Number of letters in database: 14,692,800
Number of sequences in database: 28,460
Lambda K H
0.310 0.129 0.358
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,267,308
Number of Sequences: 28460
Number of extensions: 24306
Number of successful extensions: 102
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 164
length of database: 4,897,600
effective HSP length: 83
effective length of query: 81
effective length of database: 2,535,420
effective search space: 205369020
effective search space used: 205369020
frameshift window, decay const: 50, 0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)
Medicago: description of AC148341.11