Medicago
BLAST2 result
TBLASTN 2.2.2 [Dec-14-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AC148341.11 - phase: 0 
         (164 letters)

Database: LJGI 
           28,460 sequences; 14,692,800 total letters

Searching..................................................done


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (...   251  3e-68
TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial...   251  6e-68
TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)               84  9e-18
TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)               63  3e-11
BP064757                                                               55  8e-09
TC10624                                                                44  2e-05
CB827481                                                               43  3e-05
AW428720                                                               40  2e-04
TC10641                                                                31  0.093
TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase car...    26  3.0
TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin at...    25  5.1
BP062602                                                               25  8.7
AU252156                                                               25  8.7

>TC14840 similar to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 749

 Score =  251 bits (642), Expect = 3e-68
 Identities = 122/159 (76%), Positives = 143/159 (89%)
 Frame = +1

Query: 5   VESSTATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMV 64
           V +S+  KK+TLKSSD E FE+++ VALESQTIKH+++D+CAD SGIPLPNVT KILA V
Sbjct: 49  VMASSPPKKVTLKSSDGEAFEVDEVVALESQTIKHMVEDDCAD-SGIPLPNVTSKILARV 225

Query: 65  IEHCKKHVDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTV 124
           IE+CKKHV+A+SS EKP+E+E+ +WD EFVKVDQ TLFDLILAANYLNIKSLLDLTC+TV
Sbjct: 226 IEYCKKHVEASSSGEKPTEEELKQWDAEFVKVDQATLFDLILAANYLNIKSLLDLTCQTV 405

Query: 125 ADMIKGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
           ADMIKG+TPEEIRKTFNI ND+TPEEEEEVR E QWAF+
Sbjct: 406 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 522


>TC15635 homologue to UP|Q9XF99 (Q9XF99) Skp1 (Fragment), partial (98%)
          Length = 810

 Score =  251 bits (640), Expect = 6e-68
 Identities = 121/155 (78%), Positives = 140/155 (90%)
 Frame = +2

Query: 9   TATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHC 68
           ++ KKITLKSSD E FE+++AVALESQTIKH+++D+CAD SGIPLPNVT KILA VIE+C
Sbjct: 110 SSAKKITLKSSDGEAFEVDEAVALESQTIKHMVEDDCAD-SGIPLPNVTSKILAKVIEYC 286

Query: 69  KKHVDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMI 128
           KKHV+A + DEKP+EDE+  WD +FVKVDQ TLFDLILAANYLNIKSLLDLTC+TVADMI
Sbjct: 287 KKHVEAANPDEKPTEDELKAWDADFVKVDQATLFDLILAANYLNIKSLLDLTCQTVADMI 466

Query: 129 KGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
           KG+TPEEIRKTFNI ND+TPEEEEEVR E QWAF+
Sbjct: 467 KGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 571


>TC15262 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
          Length = 665

 Score = 84.3 bits (207), Expect = 9e-18
 Identities = 55/160 (34%), Positives = 83/160 (51%), Gaps = 3/160 (1%)
 Frame = +2

Query: 7   SSTATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSG--IPLPNVTGKILAMV 64
           S + +K ITLK++D E F +E ++A E + ++  IDD   DD    IPLP V+ + L  +
Sbjct: 80  SPSLSKTITLKAADGELFRVETSIAKEMKAVEIFIDD---DDKAFIIPLPEVSSQDLVKI 250

Query: 65  IEHCKKHVDATSSDEKPSEDEINKWDTEFVK-VDQDTLFDLILAANYLNIKSLLDLTCKT 123
           IE+CK+   A ++ +         +D EF K ++   L  LI AANYLN+  LLDL  + 
Sbjct: 251 IEYCKQRRTAANAKD---------FDAEFAKALNNKELLSLIAAANYLNMADLLDLLSQC 403

Query: 124 VADMIKGRTPEEIRKTFNIINDYTPEEEEEVRSETQWAFD 163
           + D +                 +T EEE  +R E  WAF+
Sbjct: 404 IVDRV*NTI-------------FTKEEEASLREEMPWAFE 484


>TC15263 similar to UP|Q8GVW5 (Q8GVW5) SKP1, partial (9%)
          Length = 433

 Score = 62.8 bits (151), Expect = 3e-11
 Identities = 44/138 (31%), Positives = 68/138 (48%), Gaps = 3/138 (2%)
 Frame = +1

Query: 29  AVALESQTIKHLIDDNCADDSG--IPLPNVTGKILAMVIEHCKKHVDATSSDEKPSEDEI 86
           +++ E + ++  IDD   DD    IPLP V+ + L  +IE+CK+   A ++ +       
Sbjct: 70  SLSKEMKAVEIFIDD---DDKAFIIPLPEVSSQDLVKIIEYCKQRRTAANAKD------- 219

Query: 87  NKWDTEFVK-VDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKTFNIIND 145
             +D EF K ++   L  LI AANYLN+  LLDL  + + D +                 
Sbjct: 220 --FDAEFAKALNNKELLSLIAAANYLNMADLLDLLSQCIVDRV*NTI------------- 354

Query: 146 YTPEEEEEVRSETQWAFD 163
           +T EEE  +R E  WAF+
Sbjct: 355 FTKEEEASLREEMPWAFE 408


>BP064757 
          Length = 401

 Score = 54.7 bits (130), Expect = 8e-09
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
 Frame = -2

Query: 68  CKKHVDATSS--DEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVA 125
           C+K  +A+ +   E  S  +I  WD EF+ V  + L  L + A +LNI+SLL L    + 
Sbjct: 400 CQKSPEASDAHTQEALSGVDIQDWDAEFIDVAHNPLLHLHICAKFLNIQSLLHLPNHAIP 221

Query: 126 DMIKGRTPEEIRKTFNI 142
           D +KG+ P  IR  FN+
Sbjct: 220 DQVKGKAPMVIRPMFNL 170


>TC10624 
          Length = 396

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 35/54 (64%)
 Frame = -3

Query: 91  TEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKTFNIIN 144
           + FVK +Q     L  AA++LNI +L++LT +T+ DM KG T EEI   ++ ++
Sbjct: 394 SSFVKDNQSIFSQLHDAASFLNIPNLMELTSRTMRDMKKGSTTEEISDRYSTLS 233


>CB827481 
          Length = 556

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 21/57 (36%), Positives = 30/57 (51%)
 Frame = +2

Query: 14  ITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKK 70
           I+LKSSDNE  ++ K  A     +   + D+      IP+P VT  IL+ +   CKK
Sbjct: 386 ISLKSSDNEVLKMNKRAATSQSKVLRDVVDSTGGRDEIPVPGVTSLILSKITSFCKK 556


>AW428720 
          Length = 352

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 24/57 (42%), Positives = 34/57 (59%)
 Frame = +1

Query: 10  ATKKITLKSSDNETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIE 66
           ++KKI L SSD + FE++  VAL S+TI+ +I  N A  S      ++  IL  VIE
Sbjct: 181 SSKKIRLVSSDGDVFEVDYGVALMSKTIEDVIKSNPAGGSDSIPVFMSSNILGQVIE 351


>TC10641 
          Length = 636

 Score = 31.2 bits (69), Expect = 0.093
 Identities = 18/53 (33%), Positives = 25/53 (46%)
 Frame = +2

Query: 87  NKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGRTPEEIRKT 139
           N W T FV  +      L  AAN+LNI SL + T        +G    +I++T
Sbjct: 77  NAWVTRFVNNNHSIFSHLHDAANFLNIPSLFEFTSLFTGLEDRGENENKIQET 235


>TC16397 UP|ACCD_LOTJA (Q9BBS1) Acetyl-coenzyme A carboxylase carboxyl
           transferase subunit beta  (ACCASE beta chain) , complete
          Length = 1514

 Score = 26.2 bits (56), Expect = 3.0
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +3

Query: 19  SDNETFEIEKAVAL-ESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKHVDATSS 77
           +D++  +IE +  L E+Q  KHL  + C +  G+    +  K    + EHC  H+  +SS
Sbjct: 633 NDSDFTKIEGSNDLDETQKYKHLWIE-CENCYGLNYKKIL-KSKMNICEHCGYHLKMSSS 806

Query: 78  DEKPSEDEINKW---DTEFVKVD 97
           D      +   W   D + + VD
Sbjct: 807 DRIELSIDPGTWNPMDEDMISVD 875


>TC16303 weakly similar to UP|AGA1_YEAST (P32323) A-agglutinin attachment
           subunit precursor, partial (3%)
          Length = 1235

 Score = 25.4 bits (54), Expect = 5.1
 Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
 Frame = +1

Query: 17  KSSDNETFEIEKAVAL-----ESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKH 71
           K  D E  E+   +A      + + +++L DDN  DD+G+  P   G             
Sbjct: 562 KDHDGEVKEMWDTIAGGDSEDDQEGVRNLDDDNFIDDTGVE-PGFYGN-----YNEPSSP 723

Query: 72  VDATSSDEKPSEDEINKWDTEFVKVDQDTLFDLILAANYLNIKSLLDLTCKTVADMIKGR 131
            +A  ++E   +DEIN       K  ++      +A    N+ + L++T +  A++ +  
Sbjct: 724 GEAPQAEEGEEDDEINDLFKMGKKKKKNERSPAEIALLVENVMAELEVTAEEDAELNRQG 903

Query: 132 TP 133
            P
Sbjct: 904 KP 909


>BP062602 
          Length = 536

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 13/52 (25%), Positives = 26/52 (50%)
 Frame = -1

Query: 21  NETFEIEKAVALESQTIKHLIDDNCADDSGIPLPNVTGKILAMVIEHCKKHV 72
           N+  E ++  +L    + HL + + A    + LPN+T  I  + +   +KH+
Sbjct: 266 NKNLEYQELSSLIICRVYHLTETHTAQVVSLHLPNITLVIFLIQVVISQKHL 111


>AU252156 
          Length = 350

 Score = 24.6 bits (52), Expect = 8.7
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +2

Query: 124 VADMIKGRTPEEIRKTFNII 143
           VA  + G+TPEE++K + ++
Sbjct: 242 VAHAVGGKTPEEVKKHYELL 301


  Database: LJGI
    Posted date:  Jul 30, 2004 11:16 AM
  Number of letters in database: 14,692,800
  Number of sequences in database:  28,460
  
Lambda     K      H
   0.310    0.129    0.358 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,267,308
Number of Sequences: 28460
Number of extensions: 24306
Number of successful extensions: 102
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of query: 164
length of database: 4,897,600
effective HSP length: 83
effective length of query: 81
effective length of database: 2,535,420
effective search space: 205369020
effective search space used: 205369020
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)


Medicago: description of AC148341.11